Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001080

Physical Location & Seq

Genomic Coordinates Forward (+)

22862919 .. 22864768

Gene Structure 1850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG234800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAACTTCTGGAGTGCTTTCGTTTACCTTATCCTCACCTGGACATTTATCCAAGGCCTCCTCTACTCAATTTCAAGAGCCAAAAACAGTTCCAAAAAGCTTCCACCAGGTCCAAAACCGCTTCCAATCCTCGGAAACCTTCTCCTACTTGGTGACAGACCTCACAAATCTCTTGCCGAACTTGCCAAAATCCATGGCCCTTTGATGTCCCTAAAACTTGGACAAGTAACCTCCATAGTTGTTTCTTCATCAGCCATGGCTAAACAAGTCCTCCAAACCCATGACCAATACTTGTCCAATCGAACAGTCCCCGATGCCATTCGAGCCCTTGATCACCACACTGTTGGCCTGCCATGGATCCCAGTCTCTCCCCTTTGGAGAAACCAAAGAAAAATATGCAACACTCAGCTATTTGCCAACAAAATGCTTGATGCTAACCAAAACTTGCGACGGAAGAAAGTGGAGCAACTCCTTGAATTAGTCCATAAAAGCAGCCTGAGTGGGGAAGCAGTTGACTTTGGTAGGGCAGCTTTTACTACGACACTCAATTTGCTGTCTAATACAATTTTTTCGATTGATTTAGCAGACCCGAGTTCCAAAATGGCCAGGGAGTTCAAGGAGATGGTGCATAATATTATGATCGAGGCTGGAAAACCAAACTTGGGGGACTGTTTTCCTTTGCTTAGGAAGATTGATCCTAATGGCAGAAGGAGGAGAATGACAAAGTATTTTGGAAAGATAATAGATTTAGTTGAAACAATAGTTCAGCAGAGGTTGGAGCTGAGAAAATCGACTGAATCTGCAACAAAGAACGATGTGTTGGATACCCTTCTCACTATTACAGAGGAAAACAGTGAGGAGCTGAACAAAAATCAACTTTATCATTTCATCCTGGTTCTTTTTGTTGCAGGGTCAGACACAGCTTCATCCACATTCCAATGGGCAATGGCAGAGCTCTTGCACAACCCTGAAGTTCTCTCAAAAGCACAATTAGAGCTTAACGAACTTGAAGATGGAGTTACACCAGAGAACATGAACATGGATGATAAGTTTGTACTCACCCTAGAGATGGCCAAACCCTTGAGAGCTATCCCTATCCCTATCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

369

Amino Acids

41.59

Weight (kDa)

9.04

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 341	9.2e-48	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33730 AT1G33730 AT2G45550 AT2G45560 AT2G45560 AT2G45560 AT2G45570 AT2G45580 AT2G45580 AT2G45580 AT3G61040 AT3G61040
fragaria_vesca	FvH4_5g01070 FvH4_5g01071
malus_domestica	MD13G1112700.v1.1 MD13G1112900.v1.1 MD13G1113000.v1.1 MD16G1116100.v1.1
prunus_persica	Prupe.1G229700_v2.0.a1 Prupe.1G230000_v2.0.a1 Prupe.1G230200_v2.0.a1 Prupe.1G230700_v2.0.a1 Prupe.2G017600_v2.0.a1 Prupe.2G019100_v2.0.a1 Prupe.5G084700_v2.0.a1
pyrus_communis	pycom13g09780 pycom13g09800 pycom13g09820 pycom13g09830 pycom16g09930 pycom16g09940 pycom16g09970
rosa_chinensis	RchiOBHm_Chr7g0200251 RchiOBHm_Chr7g0200291 RchiOBHm_Chr7g0208051
rosa_laevigata	RLG00000003258 RLG00000003739 RLG00000003740
rosa_multiflora	Rmu_sc0002039.1_g000017 Rmu_sc0017949.1_g000001 Rmu_sc0019284.1_g000003
rosa_roxburghii	Rroxscaffold_3G00250850 Rroxscaffold_3G00256180 Rroxscaffold_3G00256190
rosa_rugosa	Rorug07G0058800 Rorug07G0058900
rosa_samantha	Rh7AG184300 Rh7AG234800 Rh7BG187000 Rh7CG194700 Rh7CG250300
rosa_wichuraiana	Rw0G018050 Rw7G016130 Rw7G020050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	3 cut(s)	352, 365, 689
AcoI	YGGCCR	2 cut(s)	603, 1071
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	1 cut(s)	1056
AfiI	CCNNNNNNNGG	4 cut(s)	131, 502, 662, 1069
AgsI	TTSAA	5 cut(s)	75, 476, 616, 755, 1010
AjnI	CCWGG	4 cut(s)	38, 106, 605, 891
AjuI	GAANNNNNNNTTGG	2 cut(s)	803, 835
AluBI	AGCT	9 cut(s)	100, 409, 530, 781, 862, 923, 955, 997, 1088
AluI	AGCT	9 cut(s)	100, 409, 530, 781, 862, 923, 955, 997, 1088
Alw21I	GWGCWC	1 cut(s)	957
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	3 cut(s)	352, 365, 689
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	5 cut(s)	55, 196, 346, 603, 1071
ApeKI	GCWGC	2 cut(s)	492, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AspS9I	GGNCC	2 cut(s)	110, 197
AsuHPI	GGTGA	4 cut(s)	28, 164, 326, 1051
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	110
BalI	TGGCCA	2 cut(s)	605, 1073
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	2 cut(s)	328, 957
Bbv12I	GWGCWC	1 cut(s)	957
BbvI	GCAGC	2 cut(s)	504, 539
BccI	CCATC	3 cut(s)	616, 1007, 1063
BciT130I	CCWGG	4 cut(s)	40, 108, 607, 893
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	1064
BfuI	GTATCC	1 cut(s)	817
BisI	GCNGC	2 cut(s)	493, 528
BlsI	GCNGC	2 cut(s)	494, 529
Bme1390I	CCNGG	4 cut(s)	40, 108, 607, 893
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	2 cut(s)	110, 197
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	4 cut(s)	40, 108, 607, 893
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	304, 421
BmuI	ACTGGG	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	1102
BsaJI	CCNNGG	6 cut(s)	52, 130, 193, 255, 353, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 502, 662, 1069
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	951
BseBI	CCWGG	4 cut(s)	40, 108, 607, 893
BseDI	CCNNGG	6 cut(s)	52, 130, 193, 255, 353, 606
BseGI	GGATG	3 cut(s)	888, 926, 1048
BseLI	CCNNNNNNNGG	4 cut(s)	131, 502, 662, 1069
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	3 cut(s)	419, 488, 773
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	3 cut(s)	50, 727, 872
BseXI	GCAGC	2 cut(s)	504, 539
BshFI	GGCC	5 cut(s)	57, 198, 348, 605, 1073
BsiHKAI	GWGCWC	1 cut(s)	957
BsiHKCI	CYCGRG	1 cut(s)	589
BslFI	GGGAC	3 cut(s)	193, 293, 680
BslI	CCNNNNNNNGG	4 cut(s)	131, 502, 662, 1069
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	3 cut(s)	193, 293, 680
BsnI	GGCC	5 cut(s)	57, 198, 348, 605, 1073
BsoBI	CYCGRG	1 cut(s)	589
Bsp1286I	GDGCHC	2 cut(s)	328, 957
Bsp143I	GATC	4 cut(s)	331, 357, 639, 694
Bsp19I	CCATGG	3 cut(s)	193, 255, 353
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	5 cut(s)	57, 198, 348, 605, 1073
BspCNI	CTCAG	3 cut(s)	418, 489, 774
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	3 cut(s)	352, 365, 689
BsrDI	GCAATG	1 cut(s)	951
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	6 cut(s)	52, 130, 193, 255, 353, 606
BssMI	GATC	4 cut(s)	331, 357, 639, 694
BssT1I	CCWWGG	4 cut(s)	52, 193, 255, 353
Bst2UI	CCWGG	4 cut(s)	40, 108, 607, 893
Bst4CI	ACNGT	5 cut(s)	89, 307, 343, 671, 854
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	5 cut(s)	405, 497, 683, 782, 1107
BstDSI	CCRYGG	3 cut(s)	193, 255, 353
BstF5I	GGATG	3 cut(s)	888, 926, 1048
BstKTI	GATC	4 cut(s)	334, 360, 642, 697
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	4 cut(s)	331, 357, 639, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 323
BstNI	CCWGG	4 cut(s)	40, 108, 607, 893
BstSCI	CCNGG	4 cut(s)	38, 106, 605, 891
BstV1I	GCAGC	2 cut(s)	504, 539
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	5 cut(s)	57, 198, 348, 605, 1073
BtgI	CCRYGG	3 cut(s)	193, 255, 353
BtsCI	GGATG	3 cut(s)	888, 926, 1048
BtsIMutI	CAGTG	2 cut(s)	339, 859
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	110, 197
CsiI	ACCWGGT	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	1055
CviAII	CATG	6 cut(s)	194, 256, 281, 354, 1033, 1039
CviQI	GTAC	1 cut(s)	1055
DdeI	CTNAG	5 cut(s)	405, 497, 683, 782, 1107
DpnI	GATC	4 cut(s)	333, 359, 641, 696
DpnII	GATC	4 cut(s)	331, 357, 639, 694
EaeI	YGGCCR	2 cut(s)	603, 1071
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	4 cut(s)	52, 193, 255, 353
Eco147I	AGGCCT	1 cut(s)	57
Eco24I	GRGCYC	2 cut(s)	328, 957
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	1 cut(s)	990
Eco88I	CYCGRG	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	955
EcoRII	CCWGG	4 cut(s)	38, 106, 605, 891
EcoT14I	CCWWGG	4 cut(s)	52, 193, 255, 353
EcoT38I	GRGCYC	2 cut(s)	328, 957
ErhI	CCWWGG	4 cut(s)	52, 193, 255, 353
FaeI	CATG	6 cut(s)	197, 259, 284, 357, 1036, 1042
FaqI	GGGAC	3 cut(s)	193, 293, 680
FatI	CATG	6 cut(s)	193, 255, 280, 353, 1032, 1038
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	493, 528
FokI	GGATG	3 cut(s)	875, 913, 1055
FriOI	GRGCYC	2 cut(s)	328, 957
Fsp4HI	GCNGC	2 cut(s)	493, 528
FspBI	CTAG	1 cut(s)	1064
GluI	GCNGC	2 cut(s)	493, 528
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	5 cut(s)	57, 198, 348, 605, 1073
Hin1II	CATG	6 cut(s)	197, 259, 284, 357, 1036, 1042
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	797
HphI	GGTGA	4 cut(s)	28, 164, 326, 1051
Hpy166II	GTNNAC	2 cut(s)	25, 514
Hpy188I	TCNGA	2 cut(s)	134, 916
Hpy188III	TCNNGA	2 cut(s)	10, 75
Hpy8I	GTNNAC	2 cut(s)	25, 514
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	3 cut(s)	149, 702, 839
HpyCH4III	ACNGT	5 cut(s)	89, 307, 343, 671, 854
HpyCH4V	TGCA	5 cut(s)	399, 628, 803, 908, 961
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 323
HpyF3I	CTNAG	5 cut(s)	405, 497, 683, 782, 1107
Hsp92II	CATG	6 cut(s)	197, 259, 284, 357, 1036, 1042
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	331, 357, 639, 694
LmnI	GCTCC	3 cut(s)	463, 778, 859
Lsp1109I	GCAGC	2 cut(s)	504, 539
LweI	GCATC	2 cut(s)	304, 421
MabI	ACCWGGT	1 cut(s)	106
MaeI	CTAG	1 cut(s)	1064
MaeIII	GTNAC	3 cut(s)	152, 226, 1018
MalI	GATC	4 cut(s)	333, 359, 641, 696
MboI	GATC	4 cut(s)	331, 357, 639, 694
MboII	GAAGA	4 cut(s)	237, 466, 700, 1022
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	328, 957
MlsI	TGGCCA	2 cut(s)	605, 1073
MluCI	AATT	5 cut(s)	69, 476, 547, 564, 989
MluNI	TGGCCA	2 cut(s)	605, 1073
MmeI	TCCRAC	2 cut(s)	756, 801
Mox20I	TGGCCA	2 cut(s)	605, 1073
MscI	TGGCCA	2 cut(s)	605, 1073
MseI	TTAA	1 cut(s)	999
MslI	CAYNNNNRTG	2 cut(s)	937, 1037
Msp20I	TGGCCA	2 cut(s)	605, 1073
MspR9I	CCNGG	4 cut(s)	40, 108, 607, 893
MvaI	CCWGG	4 cut(s)	40, 108, 607, 893
MwoI	GCNNNNNNNGC	2 cut(s)	182, 323
NcoI	CCATGG	3 cut(s)	193, 255, 353
NdeII	GATC	4 cut(s)	331, 357, 639, 694
NlaIII	CATG	6 cut(s)	197, 259, 284, 357, 1036, 1042
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	797
PkrI	GCNGC	2 cut(s)	494, 529
Psp124BI	GAGCTC	1 cut(s)	957
Psp6I	CCWGG	4 cut(s)	38, 106, 605, 891
PspGI	CCWGG	4 cut(s)	38, 106, 605, 891
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	2 cut(s)	110, 197
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	1 cut(s)	1056
RsaNI	GTAC	1 cut(s)	1055
RseI	CAYNNNNRTG	2 cut(s)	937, 1037
SacI	GAGCTC	1 cut(s)	957
SaqAI	TTAA	1 cut(s)	999
SatI	GCNGC	2 cut(s)	493, 528
Sau3AI	GATC	4 cut(s)	331, 357, 639, 694
Sau96I	GGNCC	2 cut(s)	110, 197
ScrFI	CCNGG	4 cut(s)	40, 108, 607, 893
SduI	GDGCHC	2 cut(s)	328, 957
SexAI	ACCWGGT	1 cut(s)	106
SfaNI	GCATC	2 cut(s)	304, 421
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	937, 1037
SmlI	CTYRAG	1 cut(s)	1081
SmoI	CTYRAG	1 cut(s)	1081
Sse9I	AATT	5 cut(s)	69, 476, 547, 564, 989
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	1064
SstI	GAGCTC	1 cut(s)	957
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	4 cut(s)	38, 106, 605, 891
StyI	CCWWGG	4 cut(s)	52, 193, 255, 353
TaaI	ACNGT	5 cut(s)	89, 307, 343, 671, 854
TaqI	TCGA	5 cut(s)	301, 322, 572, 642, 791
TasI	AATT	5 cut(s)	69, 476, 547, 564, 989
TatI	WGTACW	1 cut(s)	1054
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	1 cut(s)	999
Tru9I	TTAA	1 cut(s)	999
TscAI	CASTG	2 cut(s)	346, 859
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	492, 527
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	5 cut(s)	17, 237, 877, 915, 1049
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	2 cut(s)	346, 859
VpaK11BI	GGWCC	1 cut(s)	110
XspI	CTAG	1 cut(s)	1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.