RchiOBHm_Chr7g0208051

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001080
Physical Location & Seq
Reverse (-)
25430335 .. 25432241
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18618

Sequence Viewer

Length: 1503 bp
ATGAACTTCTGGAGTGCTTTCGTTTACCTTATCCTCACCTGGACATTTATCCAAGGCCTCCTCTACTCAATTTCAAGAGCCAAAAACAGTTCCAAAAAGCTTCCACCAGGTCCAAAACCGCTTCCAATCCTCGGAAACCTTCTCCTACTTGGTGACAGACCTCACAAATCTCTTGCCGAACTTGCCAAAATCCATGGCCCTTTGATGTCCCTAAAACTTGGACAAGTAACCTCCATAGTTGTTTCTTCATCAGCCATGGCTAAACAAGTCCTCCAAACCCATGACCAATACTTGTCCAATCGAACAGTCCCCGATGCCATTCGAGCCCTTGATCACCACACTGTTGGCCTGCCATGGATCCCAGTCTCTCCCCTTTGGAGAAACCAAAGAAAAATATGCAACACTCAGCTATTTGCCAACAAAATGCTTGATGCTAACCAAAACTTGCGACGGAAGAAAGTGGAGCAACTCCTTGAATTAGTCCATAAAAGCAGCCTGAGTGGGGAAGCAGTTGACTTTGGTAGGGCAGCTTTTACTACGACACTCAATTTGCTGTCTAATACAATTTTTTCGATTGATTTAGCAGACCCGAGTTCCAAAATGGCCAGGGAGTTCAAGGAGATGGTGCATAATATTATGATCGAGGCTGGAAAACCAAACTTGGGGGACTGTTTTCCTTTGCTTAGGAAGATTGATCCTAATGGCAGAAGGAGGAGAATGACAAAGTATTTTGGAAAGATAATAGATTTAGTTGAAACAATAGTTCAGCAGAGGTTGGAGCTGAGAAAATCGACTGAATCTGCAACAAAGAACGATGTGTTGGATACCCTTCTCACTATTACAGAGGAAAACAGTGAGGAGCTGAACAAAAATCAACTTTATCATTTCATCCTGGTTCTTTTTGTTGCAGGGTCAGACACAGCTTCATCCACATTCCAATGGGCAATGGCAGAGCTCTTGCACAACCCTGAAGTTCTCTCAAAAGCACAATTAGAGCTTAACGAAGTAATTGGCAAAGGCAATCATGTTGAGGAATCAGACATTACTAGACTACCTTACTTGCAAGCCATTATTAAAGAAACATTTCGTATGCACCCTGCAGTTCCTTTGTTACTTCCCCGAAAAGCCGAATCAGATGTAGAGATTGAAGGCTCCACAGTCCCGAAGGGTGCACAAGTGCTTGTTAACGCATGGGCCATTGGCAGAGACCCAAGCACATGGGATGACCCGAATTCATTCAAGCCGGAGAGGTTCTTGGGGTCTCTACTCGATGTTAGAGGCCGGAATTTTGAACTTATTCCATTTGGCGCCGGCAGGAGAATATGTCCGGGATTGCCATTGGCAATGAGAATGTTGCACTTAATGTTGGGTTCTCTTATCCATTCCTTTGTTTGGAAGCTTGAAGATGGAGTTACACCAGAGAACATGAACATGGATGATAAGTTTGTACTCACCCTAGAGATGGCCAAACCCTTGAGAGCTATCCCTATCCCTATCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

500

Amino Acids

56.22

Weight (kDa)

9.12

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 485 2.5e-105 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1307
AciI CCGC 1 cut(s) 119
AclWI GGATC 3 cut(s) 352, 365, 689
AcoI YGGCCR 2 cut(s) 603, 1464
AcsI RAATTY 2 cut(s) 1231, 1285
AcuI CTGAAG 1 cut(s) 990
AcyI GRCGYC 1 cut(s) 1308
AfaI GTAC 1 cut(s) 1449
AfiI CCNNNNNNNGG 5 cut(s) 131, 502, 662, 1392, 1462
AgsI TTSAA 8 cut(s) 75, 476, 616, 755, 1148, 1240, 1292, 1403
AjnI CCWGG 4 cut(s) 38, 106, 605, 891
AjuI GAANNNNNNNTTGG 2 cut(s) 803, 835
Alw21I GWGCWC 2 cut(s) 957, 1174
Alw26I GTCTC 3 cut(s) 370, 1200, 1266
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 3 cut(s) 352, 365, 689
Ama87I CYCGRG 1 cut(s) 589
AoxI GGCC 7 cut(s) 55, 196, 346, 603, 1194, 1279, 1464
ApaLI GTGCAC 1 cut(s) 1170
ApeKI GCWGC 2 cut(s) 492, 527
ApoI RAATTY 2 cut(s) 1231, 1285
ArsI GACNNNNNNTTYG 2 cut(s) 532, 564
Asp700I GAANNNNTTC 3 cut(s) 1083, 1235, 1296
AspLEI GCGC 1 cut(s) 1310
AspS9I GGNCC 3 cut(s) 110, 197, 1194
AsuC2I CCSGG 1 cut(s) 1329
AsuHPI GGTGA 4 cut(s) 28, 164, 326, 1444
AvaI CYCGRG 1 cut(s) 589
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 1174
BalI TGGCCA 2 cut(s) 605, 1466
BamHI GGATCC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 1307
BanII GRGCYC 2 cut(s) 328, 957
Bbv12I GWGCWC 2 cut(s) 957, 1174
BbvI GCAGC 2 cut(s) 504, 539
BccI CCATC 3 cut(s) 616, 1400, 1456
BciT130I CCWGG 4 cut(s) 40, 108, 607, 893
BciVI GTATCC 1 cut(s) 817
BclI TGATCA 1 cut(s) 331
BcnI CCSGG 1 cut(s) 1329
BcoDI GTCTC 3 cut(s) 370, 1200, 1266
BfaI CTAG 2 cut(s) 1047, 1457
BfmI CTRYAG 1 cut(s) 1098
BfoI RGCGCY 1 cut(s) 1311
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 2 cut(s) 493, 528
BlsI GCNGC 2 cut(s) 494, 529
Bme1390I CCNGG 5 cut(s) 40, 108, 607, 893, 1329
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 589
BmgT120I GGNCC 3 cut(s) 110, 197, 1194
BmiI GGNNCC 3 cut(s) 359, 1153, 1309
BmrFI CCNGG 5 cut(s) 40, 108, 607, 893, 1329
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 2 cut(s) 304, 421
BmuI ACTGGG 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1495
BpuMI CCSGG 1 cut(s) 1329
BsaHI GRCGYC 1 cut(s) 1308
BsaI GGTCTC 2 cut(s) 1200, 1266
BsaJI CCNNGG 6 cut(s) 52, 130, 193, 255, 353, 606
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 1309, 1339
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 502, 662, 1392, 1462
Bse118I RCCGGY 1 cut(s) 1310
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 2 cut(s) 951, 1350
BseBI CCWGG 4 cut(s) 40, 108, 607, 893
BseDI CCNNGG 6 cut(s) 52, 130, 193, 255, 353, 606
BseGI GGATG 4 cut(s) 888, 926, 1228, 1441
BseLI CCNNNNNNNGG 5 cut(s) 131, 502, 662, 1392, 1462
BseMI GCAATG 2 cut(s) 951, 1350
BseMII CTCAG 3 cut(s) 419, 488, 773
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 3 cut(s) 50, 727, 872
BseSI GKGCMC 1 cut(s) 1174
BseXI GCAGC 2 cut(s) 504, 539
BshFI GGCC 7 cut(s) 57, 198, 348, 605, 1196, 1281, 1466
BshNI GGYRCC 1 cut(s) 1307
BsiHKAI GWGCWC 2 cut(s) 957, 1174
BsiHKCI CYCGRG 1 cut(s) 589
BsiSI CCGG 4 cut(s) 1244, 1282, 1311, 1328
BslFI GGGAC 4 cut(s) 193, 293, 680, 1145
BslI CCNNNNNNNGG 5 cut(s) 131, 502, 662, 1392, 1462
BsmAI GTCTC 3 cut(s) 370, 1200, 1266
BsmFI GGGAC 4 cut(s) 193, 293, 680, 1145
BsnI GGCC 7 cut(s) 57, 198, 348, 605, 1196, 1281, 1466
Bso31I GGTCTC 2 cut(s) 1200, 1266
BsoBI CYCGRG 1 cut(s) 589
Bsp1286I GDGCHC 3 cut(s) 328, 957, 1174
Bsp143I GATC 4 cut(s) 331, 357, 639, 694
Bsp19I CCATGG 3 cut(s) 193, 255, 353
BspACI CCGC 1 cut(s) 119
BspANI GGCC 7 cut(s) 57, 198, 348, 605, 1196, 1281, 1466
BspCNI CTCAG 3 cut(s) 418, 489, 774
BspLI GGNNCC 3 cut(s) 359, 1153, 1309
BspMAI CTGCAG 1 cut(s) 1102
BspPI GGATC 3 cut(s) 352, 365, 689
BspT107I GGYRCC 1 cut(s) 1307
BspTNI GGTCTC 2 cut(s) 1200, 1266
BsrDI GCAATG 2 cut(s) 951, 1350
BsrFI RCCGGY 1 cut(s) 1310
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 1310
BssECI CCNNGG 6 cut(s) 52, 130, 193, 255, 353, 606
BssMI GATC 4 cut(s) 331, 357, 639, 694
BssNI GRCGYC 1 cut(s) 1308
BssT1I CCWWGG 4 cut(s) 52, 193, 255, 353
Bst2UI CCWGG 4 cut(s) 40, 108, 607, 893
Bst4CI ACNGT 6 cut(s) 89, 307, 343, 671, 854, 1159
BstACI GRCGYC 1 cut(s) 1308
BstC8I GCNNGC 3 cut(s) 350, 1065, 1312
BstDEI CTNAG 5 cut(s) 405, 497, 683, 782, 1500
BstDSI CCRYGG 3 cut(s) 193, 255, 353
BstF5I GGATG 4 cut(s) 888, 926, 1228, 1441
BstH2I RGCGCY 1 cut(s) 1311
BstHHI GCGC 1 cut(s) 1310
BstKTI GATC 4 cut(s) 334, 360, 642, 697
BstMAI GTCTC 3 cut(s) 370, 1200, 1266
BstMBI GATC 4 cut(s) 331, 357, 639, 694
BstMWI GCNNNNNNNGC 2 cut(s) 182, 323
BstNI CCWGG 4 cut(s) 40, 108, 607, 893
BstSCI CCNGG 5 cut(s) 38, 106, 605, 891, 1327
BstSFI CTRYAG 1 cut(s) 1098
BstSLI GKGCMC 1 cut(s) 1174
BstV1I GCAGC 2 cut(s) 504, 539
BstX2I RGATCY 1 cut(s) 357
BstXI CCANNNNNNTGG 2 cut(s) 344, 1218
BstYI RGATCY 1 cut(s) 357
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 7 cut(s) 57, 198, 348, 605, 1196, 1281, 1466
BtgI CCRYGG 3 cut(s) 193, 255, 353
BtsCI GGATG 4 cut(s) 888, 926, 1228, 1441
BtsIMutI CAGTG 2 cut(s) 339, 859
Cac8I GCNNGC 3 cut(s) 350, 1065, 1312
CfoI GCGC 1 cut(s) 1310
Cfr10I RCCGGY 1 cut(s) 1310
Cfr13I GGNCC 3 cut(s) 110, 197, 1194
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 1 cut(s) 1448
CviAII CATG 9 cut(s) 194, 256, 281, 354, 1025, 1191, 1218, 1426, 1432
CviQI GTAC 1 cut(s) 1448
DdeI CTNAG 5 cut(s) 405, 497, 683, 782, 1500
DinI GGCGCC 1 cut(s) 1309
DpnI GATC 4 cut(s) 333, 359, 641, 696
DpnII GATC 4 cut(s) 331, 357, 639, 694
EaeI YGGCCR 2 cut(s) 603, 1464
Ecl136II GAGCTC 1 cut(s) 955
Eco130I CCWWGG 4 cut(s) 52, 193, 255, 353
Eco147I AGGCCT 1 cut(s) 57
Eco24I GRGCYC 2 cut(s) 328, 957
Eco31I GGTCTC 2 cut(s) 1200, 1266
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 955
Eco57I CTGAAG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 589
EcoICRI GAGCTC 1 cut(s) 955
EcoRI GAATTC 1 cut(s) 1231
EcoRII CCWGG 4 cut(s) 38, 106, 605, 891
EcoT14I CCWWGG 4 cut(s) 52, 193, 255, 353
EcoT38I GRGCYC 2 cut(s) 328, 957
EgeI GGCGCC 1 cut(s) 1309
EheI GGCGCC 1 cut(s) 1309
ErhI CCWWGG 4 cut(s) 52, 193, 255, 353
FaeI CATG 9 cut(s) 197, 259, 284, 357, 1028, 1194, 1221, 1429, 1435
FaqI GGGAC 4 cut(s) 193, 293, 680, 1145
FatI CATG 9 cut(s) 193, 255, 280, 353, 1024, 1190, 1217, 1425, 1431
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 493, 528
FokI GGATG 4 cut(s) 875, 913, 1235, 1448
FriOI GRGCYC 2 cut(s) 328, 957
Fsp4HI GCNGC 2 cut(s) 493, 528
FspBI CTAG 2 cut(s) 1047, 1457
GlaI GCGC 1 cut(s) 1309
GluI GCNGC 2 cut(s) 493, 528
GsuI CTGGAG 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 1311
HaeIII GGCC 7 cut(s) 57, 198, 348, 605, 1196, 1281, 1466
HapII CCGG 4 cut(s) 1244, 1282, 1311, 1328
HhaI GCGC 1 cut(s) 1310
Hin1I GRCGYC 1 cut(s) 1308
Hin1II CATG 9 cut(s) 197, 259, 284, 357, 1028, 1194, 1221, 1429, 1435
Hin6I GCGC 1 cut(s) 1308
HinP1I GCGC 1 cut(s) 1308
HincII GTYRAC 2 cut(s) 514, 1186
HindII GTYRAC 2 cut(s) 514, 1186
HindIII AAGCTT 2 cut(s) 98, 1397
HinfI GANTC 3 cut(s) 797, 1034, 1130
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 4 cut(s) 1244, 1282, 1311, 1328
HphI GGTGA 4 cut(s) 28, 164, 326, 1444
Hpy166II GTNNAC 4 cut(s) 25, 514, 1172, 1186
Hpy188I TCNGA 4 cut(s) 134, 916, 1039, 1135
Hpy188III TCNNGA 3 cut(s) 10, 75, 1162
Hpy8I GTNNAC 4 cut(s) 25, 514, 1172, 1186
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 5 cut(s) 149, 702, 839, 1142, 1159
HpyCH4III ACNGT 6 cut(s) 89, 307, 343, 671, 854, 1159
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 323
HpyF3I CTNAG 5 cut(s) 405, 497, 683, 782, 1500
Hsp92I GRCGYC 1 cut(s) 1308
Hsp92II CATG 9 cut(s) 197, 259, 284, 357, 1028, 1194, 1221, 1429, 1435
HspAI GCGC 1 cut(s) 1308
KasI GGCGCC 1 cut(s) 1307
KroI GCCGGC 1 cut(s) 1310
KroNI GCCGGC 1 cut(s) 1312
Ksp22I TGATCA 1 cut(s) 331
KspAI GTTAAC 1 cut(s) 1186
Kzo9I GATC 4 cut(s) 331, 357, 639, 694
LmnI GCTCC 4 cut(s) 463, 778, 859, 1157
Lsp1109I GCAGC 2 cut(s) 504, 539
LweI GCATC 2 cut(s) 304, 421
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 2 cut(s) 1047, 1457
MaeIII GTNAC 4 cut(s) 152, 226, 1110, 1411
MalI GATC 4 cut(s) 333, 359, 641, 696
MboI GATC 4 cut(s) 331, 357, 639, 694
MboII GAAGA 4 cut(s) 237, 466, 700, 1415
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 3 cut(s) 328, 957, 1174
MlsI TGGCCA 2 cut(s) 605, 1466
MluCI AATT 8 cut(s) 69, 476, 547, 564, 989, 1008, 1231, 1285
MluNI TGGCCA 2 cut(s) 605, 1466
Mly113I GGCGCC 1 cut(s) 1308
MmeI TCCRAC 2 cut(s) 756, 801
Mox20I TGGCCA 2 cut(s) 605, 1466
MroNI GCCGGC 1 cut(s) 1310
MroXI GAANNNNTTC 3 cut(s) 1083, 1235, 1296
MscI TGGCCA 2 cut(s) 605, 1466
MseI TTAA 4 cut(s) 999, 1074, 1185, 1361
MslI CAYNNNNRTG 2 cut(s) 937, 1430
Msp20I TGGCCA 2 cut(s) 605, 1466
MspI CCGG 4 cut(s) 1244, 1282, 1311, 1328
MspR9I CCNGG 5 cut(s) 40, 108, 607, 893, 1329
MvaI CCWGG 4 cut(s) 40, 108, 607, 893
MwoI GCNNNNNNNGC 2 cut(s) 182, 323
NaeI GCCGGC 1 cut(s) 1312
NarI GGCGCC 1 cut(s) 1308
NciI CCSGG 1 cut(s) 1329
NcoI CCATGG 3 cut(s) 193, 255, 353
NdeII GATC 4 cut(s) 331, 357, 639, 694
NgoMIV GCCGGC 1 cut(s) 1310
NlaIII CATG 9 cut(s) 197, 259, 284, 357, 1028, 1194, 1221, 1429, 1435
NlaIV GGNNCC 3 cut(s) 359, 1153, 1309
NmuCI GTSAC 1 cut(s) 152
PceI AGGCCT 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 1312
PdmI GAANNNNTTC 3 cut(s) 1083, 1235, 1296
PfeI GAWTC 3 cut(s) 797, 1034, 1130
PfoI TCCNGGA 1 cut(s) 1327
PkrI GCNGC 2 cut(s) 494, 529
PluTI GGCGCC 1 cut(s) 1311
Psp124BI GAGCTC 1 cut(s) 957
Psp6I CCWGG 4 cut(s) 38, 106, 605, 891
PspGI CCWGG 4 cut(s) 38, 106, 605, 891
PspN4I GGNNCC 3 cut(s) 359, 1153, 1309
PspPI GGNCC 3 cut(s) 110, 197, 1194
PstI CTGCAG 1 cut(s) 1102
PsuI RGATCY 1 cut(s) 357
RsaI GTAC 1 cut(s) 1449
RsaNI GTAC 1 cut(s) 1448
RseI CAYNNNNRTG 2 cut(s) 937, 1430
SacI GAGCTC 1 cut(s) 957
SaqAI TTAA 4 cut(s) 999, 1074, 1185, 1361
SatI GCNGC 2 cut(s) 493, 528
Sau3AI GATC 4 cut(s) 331, 357, 639, 694
Sau96I GGNCC 3 cut(s) 110, 197, 1194
ScrFI CCNGG 5 cut(s) 40, 108, 607, 893, 1329
SduI GDGCHC 3 cut(s) 328, 957, 1174
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 2 cut(s) 304, 421
SfcI CTRYAG 1 cut(s) 1098
SfoI GGCGCC 1 cut(s) 1309
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 937, 1430
SmlI CTYRAG 1 cut(s) 1474
SmoI CTYRAG 1 cut(s) 1474
Sse9I AATT 8 cut(s) 69, 476, 547, 564, 989, 1008, 1231, 1285
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 1 cut(s) 119
SspDI GGCGCC 1 cut(s) 1307
SspI AATATT 1 cut(s) 634
SspMI CTAG 2 cut(s) 1047, 1457
SstI GAGCTC 1 cut(s) 957
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 5 cut(s) 38, 106, 605, 891, 1327
StyI CCWWGG 4 cut(s) 52, 193, 255, 353
TaaI ACNGT 6 cut(s) 89, 307, 343, 671, 854, 1159
TaqI TCGA 6 cut(s) 301, 322, 572, 642, 791, 1269
TasI AATT 8 cut(s) 69, 476, 547, 564, 989, 1008, 1231, 1285
TatI WGTACW 1 cut(s) 1447
TfiI GAWTC 3 cut(s) 797, 1034, 1130
Tru1I TTAA 4 cut(s) 999, 1074, 1185, 1361
Tru9I TTAA 4 cut(s) 999, 1074, 1185, 1361
TscAI CASTG 2 cut(s) 346, 859
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 492, 527
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 6 cut(s) 17, 237, 877, 915, 1224, 1442
TspGWI ACGGA 1 cut(s) 466
TspRI CASTG 2 cut(s) 346, 859
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 2 cut(s) 1231, 1285
XmnI GAANNNNTTC 3 cut(s) 1083, 1235, 1296
XspI CTAG 2 cut(s) 1047, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.