Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001080

Physical Location & Seq

Genomic Coordinates Reverse (-)

659792 .. 660358

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTGCAATGGACAATGGCTGAGCTACTACACAACCCTGTAGTACTGTCAAAAGCACAACTAGAGCTCAGTGAAGTGATTGGAAAAGGCAATCCAGTTGAGGAATCCGACATTGCTAGACTACCTTACTTGCAAGCCATTGTCAAAGAAACTTTCCGTTTGCACCAAGGTCCTTTCTTACTTCCCCGAAGAGCTGAGTCAGACATAGAAATTGAAGGCTTGACAGTTCCAAAGGGAGCACAAGTGCTTGTTAACATATGGGCCATTGGCAGAGACTCAAACCTATGGGATGAGACGAATTCATTCAAACCGGACAGGTTCTTGGGGTCTGAAGTTGGTGTTAGACGTCAGAATTTTGAGTTTATTCCATTTGGCGCCGGATGTAGAATATGTCCGGGAGTGCCATTGGCAATGAGAATGTTGCACTTAATGTTGGGTTCTCTTATTCATTCCTTCGTTTGGAAGCTTGAAGATGGAGTTACACCAGAGAACATGAACATGGATGATAATTTTGGACTCAGCGTAGAGATGGCTGAACCTTTGAGAGCAATCCCTATCCCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

189

Amino Acids

21.1

Weight (kDa)

5.12

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 169	3.8e-53	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33730 AT1G33730 AT2G45550 AT2G45560 AT2G45560 AT2G45560 AT2G45570 AT2G45580 AT2G45580 AT2G45580 AT3G61040 AT3G61040
fragaria_vesca	FvH4_5g01070 FvH4_5g01071
malus_domestica	MD13G1112700.v1.1 MD13G1112900.v1.1 MD13G1113000.v1.1 MD16G1116100.v1.1
prunus_persica	Prupe.1G229700_v2.0.a1 Prupe.1G230000_v2.0.a1 Prupe.1G230200_v2.0.a1 Prupe.1G230700_v2.0.a1 Prupe.2G017600_v2.0.a1 Prupe.2G019100_v2.0.a1 Prupe.5G084700_v2.0.a1
pyrus_communis	pycom13g09780 pycom13g09800 pycom13g09820 pycom13g09830 pycom16g09930 pycom16g09940 pycom16g09970
rosa_chinensis	RchiOBHm_Chr7g0200251 RchiOBHm_Chr7g0200291 RchiOBHm_Chr7g0208051
rosa_laevigata	RLG00000003258 RLG00000003739 RLG00000003740
rosa_multiflora	Rmu_sc0002039.1_g000017 Rmu_sc0017949.1_g000001 Rmu_sc0019284.1_g000003
rosa_roxburghii	Rroxscaffold_3G00250850 Rroxscaffold_3G00256180 Rroxscaffold_3G00256190
rosa_rugosa	Rorug07G0058800 Rorug07G0058900
rosa_samantha	Rh7AG184300 Rh7AG234800 Rh7BG187000 Rh7CG194700 Rh7CG250300
rosa_wichuraiana	Rw0G018050 Rw7G016130 Rw7G020050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	298, 352
AcuI	CTGAAG	1 cut(s)	351
AcyI	GRCGYC	2 cut(s)	346, 375
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	215, 307, 470
AluBI	AGCT	4 cut(s)	25, 67, 194, 466
AluI	AGCT	4 cut(s)	25, 67, 194, 466
Alw21I	GWGCWC	2 cut(s)	69, 241
Alw26I	GTCTC	2 cut(s)	267, 287
AoxI	GGCC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	298, 352
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	170, 261
AsuC2I	CCSGG	1 cut(s)	396
AvaII	GGWCC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	69, 241
BccI	CCATC	2 cut(s)	467, 523
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	267, 287
BfaI	CTAG	2 cut(s)	62, 117
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	378
BlpI	GCTNAGC	1 cut(s)	21
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	170, 261
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	396
BsaHI	GRCGYC	2 cut(s)	346, 375
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	3 cut(s)	14, 111, 417
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	295, 386, 508
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	3 cut(s)	14, 111, 417
BseMII	CTCAG	4 cut(s)	12, 82, 186, 532
BseNI	ACTGG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	374
BsiHKAI	GWGCWC	2 cut(s)	69, 241
BsiSI	CCGG	3 cut(s)	311, 378, 395
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	267, 287
BsmBI	CGTCTC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	69, 241
Bsp1720I	GCTNAGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	4 cut(s)	13, 81, 187, 531
BspLI	GGNNCC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	3 cut(s)	14, 111, 417
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	166
BssNI	GRCGYC	2 cut(s)	346, 375
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	48, 226
Bst6I	CTCTTC	1 cut(s)	184
BstACI	GRCGYC	2 cut(s)	346, 375
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	21, 68, 195, 518
BstF5I	GGATG	3 cut(s)	295, 386, 508
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstMAI	GTCTC	2 cut(s)	267, 287
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	3 cut(s)	295, 386, 508
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	170, 261
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	2 cut(s)	493, 499
CviJI	RGCY	9 cut(s)	20, 25, 67, 137, 194, 219, 263, 466, 533
CviKI_1	RGCY	9 cut(s)	20, 25, 67, 137, 194, 219, 263, 466, 533
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	4 cut(s)	21, 68, 195, 518
DinI	GGCGCC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	376
EheI	GGCGCC	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	496, 502
FaiI	YATR	7 cut(s)	206, 257, 259, 286, 391, 494, 500
FatI	CATG	2 cut(s)	492, 498
FauNDI	CATATG	1 cut(s)	257
FokI	GGATG	3 cut(s)	302, 393, 515
FriOI	GRGCYC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	62, 117
GlaI	GCGC	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	3 cut(s)	311, 378, 395
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	2 cut(s)	346, 375
Hin1II	CATG	2 cut(s)	496, 502
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	4 cut(s)	104, 197, 275, 516
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	3 cut(s)	311, 378, 395
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	4 cut(s)	109, 202, 331, 351
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	209, 463
HpyCH4III	ACNGT	2 cut(s)	48, 226
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	7, 133, 163, 424
HpyF3I	CTNAG	4 cut(s)	21, 68, 195, 518
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	2 cut(s)	346, 375
Hsp92II	CATG	2 cut(s)	496, 502
HspAI	GCGC	1 cut(s)	375
KasI	GGCGCC	1 cut(s)	374
KspAI	GTTAAC	1 cut(s)	253
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	51, 108, 301, 324, 391, 408, 498
MaeI	CTAG	2 cut(s)	62, 117
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	478
MboII	GAAGA	2 cut(s)	201, 482
MhlI	GDGCHC	2 cut(s)	69, 241
MluCI	AATT	4 cut(s)	210, 298, 352, 508
Mly113I	GGCGCC	1 cut(s)	375
MlyI	GAGTC	3 cut(s)	206, 269, 510
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	2 cut(s)	252, 428
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	3 cut(s)	311, 378, 395
MspR9I	CCNGG	1 cut(s)	396
NarI	GGCGCC	1 cut(s)	375
NciI	CCSGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	257
NlaIII	CATG	2 cut(s)	496, 502
NlaIV	GGNNCC	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	394
PleI	GAGTC	3 cut(s)	205, 269, 510
PluTI	GGCGCC	1 cut(s)	378
PpsI	GAGTC	3 cut(s)	205, 269, 510
PpuMI	RGGWCCY	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	170, 261
PspPPI	RGGWCCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	252, 428
Sau96I	GGNCC	2 cut(s)	170, 261
ScaI	AGTACT	1 cut(s)	45
SchI	GAGTC	3 cut(s)	206, 269, 510
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	2 cut(s)	69, 241
SfcI	CTRYAG	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	376
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	4 cut(s)	210, 298, 352, 508
SspDI	GGCGCC	1 cut(s)	374
SspMI	CTAG	2 cut(s)	62, 117
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	48, 226
TaiI	ACGT	1 cut(s)	349
TasI	AATT	4 cut(s)	210, 298, 352, 508
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	252, 428
Tru9I	TTAA	2 cut(s)	252, 428
TscAI	CASTG	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	291, 437, 509
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	2 cut(s)	298, 352
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	2 cut(s)	62, 117
ZraI	GACGTC	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.