Rw7G016130

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001080
Physical Location & Seq
Forward (+)
16483500 .. 16486774
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016130.1

Sequence Viewer

Length: 1269 bp
ATGAACTTCTGGAGTGCTTTCGTTTACCTTATCCTCACCTGGACATTGATCCAAGCCCTCCTCTACTCAATTTCAAGAGCCAAAAACACCTCCAAAAAGCTTCCACCAGGTCCAAAACCGCTTCCAATCCTCGGAAACCTTCTCCTACTTGGTGACAAACCTCACAAATCTCTTGCCAAACTTGCCCAAATTCATGGCCCTTTAATGTCCCTAAAACTTGGACAAGTAACCTCCATAGTTGTTTCTTCATCAGCCATGGCCAAACAAGTCATGCAAACCCATGATCAATTCTTCTCCAACCGAACAATCCCCGATTCCATTCGAGCCCTTGATCACCACATTGTTGGCTTGCCATGGATCCCTGTCTCACCCCTCTGGAGAAACCTAAGAAAAATATGCAACACTCAACTATTTGCCAACAAGATGCTTGATGCTAACCAAAACCTGCGACGCAAAAAAGTGGAGCAACTCCTTGAATCAGTCCATAAAAGCAGCCTGAGTGGGGAAGCAGTTGACTTTGGTAGGGCAGCTTTCACCACAACACTCAATTTGCTCTCTAATACAACTTTTTCAATTGATTTAGCAGACCCGAGTTCCAAAATGGCCAGGGAGTTCAAGGAGATGATGCATAATATTATGATCGAGGCTGGAAAACCAAACTTGGGGGACTATTTTCCTGTGCTTAGGAAGATTGATCCTAATGGCAGAAGAAGGAGAATGATAAAGTATTTTGGAAAGATAATAGATTTAGTTGAAACAATAGTTCAGCAGAGGTTGGAGCTGAGAAAATCGACTGAATCTGCAACAAAGAACGATGTGTTGGATACCCTTCTCACTATTACAGAAGAAAACAGTGAGGAGCTCAACAAAAATCAACTTTATCATTTCATACTGGTTCTTTTTGTTGCAGGGTCAGACACAACAACATCCACATTCCAATGGGCAATGGCAGAGGTCTTGCACAACCCTGAAGTTCTGTCAAAAGCACAATTAGAGCTTAACGAAGTAATTGGCAAAGGCAATCCAGTTGAGGAATCAGACATTACTAGACTTCCTTACTTGCAAGCCATTATTAAAGAAACATTTCGTATGCACCCTGCAGTTCCTTTGCTACTTCCCCGAAAAGCCGAATCAGATGTAGAAATTGAAGGCTCCACAGTCCCAAAGGGTGCACAAGTGCTTGTTAACGCATGGGCCATTGGCAGAGACCCAAGTATATGGGACGACCCGGATTCATTCAAGCCGGCCGGAGAGATTTTTGGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

422

Amino Acids

47.38

Weight (kDa)

9.04

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 415 9.1e-85 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 453
AciI CCGC 1 cut(s) 119
AclWI GGATC 4 cut(s) 43, 352, 365, 689
AcoI YGGCCR 3 cut(s) 258, 603, 1245
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 990
AfiI CCNNNNNNNGG 3 cut(s) 131, 502, 662
AgsI TTSAA 7 cut(s) 75, 476, 573, 616, 755, 1148, 1240
AjnI CCWGG 3 cut(s) 38, 106, 605
AjuI GAANNNNNNNTTGG 2 cut(s) 803, 835
AluBI AGCT 5 cut(s) 100, 530, 781, 862, 997
AluI AGCT 5 cut(s) 100, 530, 781, 862, 997
Alw21I GWGCWC 2 cut(s) 864, 1174
Alw26I GTCTC 2 cut(s) 370, 1200
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 4 cut(s) 43, 352, 365, 689
Ama87I CYCGRG 1 cut(s) 589
AoxI GGCC 5 cut(s) 196, 258, 603, 1194, 1245
ApaLI GTGCAC 1 cut(s) 1170
ApeKI GCWGC 2 cut(s) 492, 527
ApoI RAATTY 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 1083
AspS9I GGNCC 3 cut(s) 110, 197, 1194
AsuC2I CCSGG 1 cut(s) 1229
AsuHPI GGTGA 5 cut(s) 28, 164, 326, 360, 526
AvaI CYCGRG 1 cut(s) 589
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 1174
BalI TGGCCA 2 cut(s) 260, 605
BamHI GGATCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 328, 864
Bbv12I GWGCWC 2 cut(s) 864, 1174
BbvI GCAGC 2 cut(s) 504, 539
BciT130I CCWGG 3 cut(s) 40, 108, 607
BciVI GTATCC 1 cut(s) 817
BclI TGATCA 2 cut(s) 283, 331
BcnI CCSGG 1 cut(s) 1229
BcoDI GTCTC 2 cut(s) 370, 1200
BfaI CTAG 1 cut(s) 1047
BfmI CTRYAG 1 cut(s) 1098
BfuAI ACCTGC 1 cut(s) 453
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 2 cut(s) 493, 528
BlsI GCNGC 2 cut(s) 494, 529
Bme1390I CCNGG 4 cut(s) 40, 108, 607, 1229
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 589
BmgT120I GGNCC 3 cut(s) 110, 197, 1194
BmiI GGNNCC 2 cut(s) 359, 1153
BmrFI CCNGG 4 cut(s) 40, 108, 607, 1229
BmsI GCATC 3 cut(s) 414, 421, 615
BpmI CTGGAG 2 cut(s) 31, 397
Bpu10I CCTNAGC 1 cut(s) 683
BpuMI CCSGG 1 cut(s) 1229
BsaI GGTCTC 1 cut(s) 1200
BsaJI CCNNGG 4 cut(s) 130, 255, 353, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 502, 662
Bse118I RCCGGY 1 cut(s) 1243
Bse1I ACTGG 2 cut(s) 897, 1025
Bse3DI GCAATG 1 cut(s) 951
BseBI CCWGG 3 cut(s) 40, 108, 607
BseDI CCNNGG 4 cut(s) 130, 255, 353, 606
BseGI GGATG 1 cut(s) 926
BseLI CCNNNNNNNGG 3 cut(s) 131, 502, 662
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 2 cut(s) 488, 773
BseNI ACTGG 2 cut(s) 897, 1025
BseRI GAGGAG 2 cut(s) 50, 872
BseSI GKGCMC 1 cut(s) 1174
BseX3I CGGCCG 1 cut(s) 1245
BseXI GCAGC 2 cut(s) 504, 539
Bsh1285I CGRYCG 1 cut(s) 1248
BshFI GGCC 5 cut(s) 198, 260, 605, 1196, 1247
BsiEI CGRYCG 1 cut(s) 1248
BsiHKAI GWGCWC 2 cut(s) 864, 1174
BsiHKCI CYCGRG 1 cut(s) 589
BsiSI CCGG 3 cut(s) 1229, 1244, 1248
BslFI GGGAC 4 cut(s) 193, 680, 1145, 1235
BslI CCNNNNNNNGG 3 cut(s) 131, 502, 662
BsmAI GTCTC 2 cut(s) 370, 1200
BsmFI GGGAC 4 cut(s) 193, 680, 1145, 1235
BsnI GGCC 5 cut(s) 198, 260, 605, 1196, 1247
Bso31I GGTCTC 1 cut(s) 1200
BsoBI CYCGRG 1 cut(s) 589
Bsp1286I GDGCHC 3 cut(s) 328, 864, 1174
Bsp143I GATC 6 cut(s) 48, 283, 331, 357, 639, 694
Bsp19I CCATGG 2 cut(s) 255, 353
BspACI CCGC 1 cut(s) 119
BspANI GGCC 5 cut(s) 198, 260, 605, 1196, 1247
BspCNI CTCAG 2 cut(s) 489, 774
BspLI GGNNCC 2 cut(s) 359, 1153
BspMAI CTGCAG 1 cut(s) 1102
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 4 cut(s) 43, 352, 365, 689
BspTNI GGTCTC 1 cut(s) 1200
BsrDI GCAATG 1 cut(s) 951
BsrFI RCCGGY 1 cut(s) 1243
BsrI ACTGG 2 cut(s) 897, 1025
BssAI RCCGGY 1 cut(s) 1243
BssECI CCNNGG 4 cut(s) 130, 255, 353, 606
BssMI GATC 6 cut(s) 48, 283, 331, 357, 639, 694
BssT1I CCWWGG 2 cut(s) 255, 353
Bst2UI CCWGG 3 cut(s) 40, 108, 607
Bst4CI ACNGT 2 cut(s) 854, 1159
BstC8I GCNNGC 3 cut(s) 350, 1065, 1245
BstDEI CTNAG 4 cut(s) 386, 497, 683, 782
BstDSI CCRYGG 2 cut(s) 255, 353
BstF5I GGATG 1 cut(s) 926
BstKTI GATC 6 cut(s) 51, 286, 334, 360, 642, 697
BstMAI GTCTC 2 cut(s) 370, 1200
BstMBI GATC 6 cut(s) 48, 283, 331, 357, 639, 694
BstMCI CGRYCG 1 cut(s) 1248
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 3 cut(s) 40, 108, 607
BstSCI CCNGG 4 cut(s) 38, 106, 605, 1227
BstSFI CTRYAG 1 cut(s) 1098
BstSLI GKGCMC 1 cut(s) 1174
BstV1I GCAGC 2 cut(s) 504, 539
BstX2I RGATCY 1 cut(s) 357
BstXI CCANNNNNNTGG 3 cut(s) 194, 344, 1218
BstYI RGATCY 1 cut(s) 357
BstZI CGGCCG 1 cut(s) 1245
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 5 cut(s) 198, 260, 605, 1196, 1247
BtgI CCRYGG 2 cut(s) 255, 353
BtsCI GGATG 1 cut(s) 926
BtsIMutI CAGTG 1 cut(s) 859
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 350, 1065, 1245
Cfr10I RCCGGY 1 cut(s) 1243
Cfr13I GGNCC 3 cut(s) 110, 197, 1194
CseI GACGC 1 cut(s) 459
CsiI ACCWGGT 1 cut(s) 106
CviAII CATG 6 cut(s) 194, 256, 271, 281, 354, 1191
DdeI CTNAG 4 cut(s) 386, 497, 683, 782
DpnI GATC 6 cut(s) 50, 285, 333, 359, 641, 696
DpnII GATC 6 cut(s) 48, 283, 331, 357, 639, 694
EaeI YGGCCR 3 cut(s) 258, 603, 1245
EagI CGGCCG 1 cut(s) 1245
Ecl136II GAGCTC 1 cut(s) 862
EclXI CGGCCG 1 cut(s) 1245
Eco130I CCWWGG 2 cut(s) 255, 353
Eco24I GRGCYC 2 cut(s) 328, 864
Eco31I GGTCTC 1 cut(s) 1200
Eco47I GGWCC 1 cut(s) 110
Eco52I CGGCCG 1 cut(s) 1245
Eco53kI GAGCTC 1 cut(s) 862
Eco57I CTGAAG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 589
EcoICRI GAGCTC 1 cut(s) 862
EcoRII CCWGG 3 cut(s) 38, 106, 605
EcoT14I CCWWGG 2 cut(s) 255, 353
EcoT22I ATGCAT 1 cut(s) 630
EcoT38I GRGCYC 2 cut(s) 328, 864
ErhI CCWWGG 2 cut(s) 255, 353
FaeI CATG 6 cut(s) 197, 259, 274, 284, 357, 1194
FaqI GGGAC 4 cut(s) 193, 680, 1145, 1235
FatI CATG 6 cut(s) 193, 255, 270, 280, 353, 1190
FbaI TGATCA 2 cut(s) 283, 331
Fnu4HI GCNGC 2 cut(s) 493, 528
FokI GGATG 1 cut(s) 913
FriOI GRGCYC 2 cut(s) 328, 864
Fsp4HI GCNGC 2 cut(s) 493, 528
FspBI CTAG 1 cut(s) 1047
GluI GCNGC 2 cut(s) 493, 528
GsuI CTGGAG 2 cut(s) 31, 397
HaeIII GGCC 5 cut(s) 198, 260, 605, 1196, 1247
HapII CCGG 3 cut(s) 1229, 1244, 1248
HgaI GACGC 1 cut(s) 459
Hin1II CATG 6 cut(s) 197, 259, 274, 284, 357, 1194
HincII GTYRAC 2 cut(s) 514, 1186
HindII GTYRAC 2 cut(s) 514, 1186
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 6 cut(s) 314, 476, 797, 1034, 1130, 1232
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 3 cut(s) 1229, 1244, 1248
HphI GGTGA 5 cut(s) 28, 164, 326, 360, 526
Hpy166II GTNNAC 4 cut(s) 25, 514, 1172, 1186
Hpy188I TCNGA 5 cut(s) 134, 916, 1039, 1135, 1268
Hpy188III TCNNGA 3 cut(s) 10, 75, 376
Hpy8I GTNNAC 4 cut(s) 25, 514, 1172, 1186
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 4 cut(s) 149, 705, 839, 1142
HpyCH4III ACNGT 2 cut(s) 854, 1159
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 4 cut(s) 386, 497, 683, 782
Hsp92II CATG 6 cut(s) 197, 259, 274, 284, 357, 1194
KroI GCCGGC 1 cut(s) 1243
KroNI GCCGGC 1 cut(s) 1245
Ksp22I TGATCA 2 cut(s) 283, 331
KspAI GTTAAC 1 cut(s) 1186
Kzo9I GATC 6 cut(s) 48, 283, 331, 357, 639, 694
LmnI GCTCC 4 cut(s) 463, 778, 859, 1157
Lsp1109I GCAGC 2 cut(s) 504, 539
LweI GCATC 3 cut(s) 414, 421, 615
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 1 cut(s) 1047
MaeIII GTNAC 2 cut(s) 152, 226
MalI GATC 6 cut(s) 50, 285, 333, 359, 641, 696
MboI GATC 6 cut(s) 48, 283, 331, 357, 639, 694
MboII GAAGA 5 cut(s) 237, 283, 700, 720, 857
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 3 cut(s) 328, 864, 1174
MlsI TGGCCA 2 cut(s) 260, 605
MluCI AATT 8 cut(s) 69, 189, 287, 547, 573, 989, 1008, 1143
MluNI TGGCCA 2 cut(s) 260, 605
MmeI TCCRAC 3 cut(s) 321, 756, 801
Mox20I TGGCCA 2 cut(s) 260, 605
Mph1103I ATGCAT 1 cut(s) 630
MroNI GCCGGC 1 cut(s) 1243
MroXI GAANNNNTTC 1 cut(s) 1083
MscI TGGCCA 2 cut(s) 260, 605
MseI TTAA 4 cut(s) 203, 999, 1074, 1185
MslI CAYNNNNRTG 1 cut(s) 937
Msp20I TGGCCA 2 cut(s) 260, 605
MspI CCGG 3 cut(s) 1229, 1244, 1248
MspR9I CCNGG 4 cut(s) 40, 108, 607, 1229
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 3 cut(s) 40, 108, 607
MwoI GCNNNNNNNGC 1 cut(s) 182
NaeI GCCGGC 1 cut(s) 1245
NciI CCSGG 1 cut(s) 1229
NcoI CCATGG 2 cut(s) 255, 353
NdeII GATC 6 cut(s) 48, 283, 331, 357, 639, 694
NgoMIV GCCGGC 1 cut(s) 1243
NlaIII CATG 6 cut(s) 197, 259, 274, 284, 357, 1194
NlaIV GGNNCC 2 cut(s) 359, 1153
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 630
PdiI GCCGGC 1 cut(s) 1245
PdmI GAANNNNTTC 1 cut(s) 1083
PfeI GAWTC 6 cut(s) 314, 476, 797, 1034, 1130, 1232
PkrI GCNGC 2 cut(s) 494, 529
Psp124BI GAGCTC 1 cut(s) 864
Psp6I CCWGG 3 cut(s) 38, 106, 605
PspGI CCWGG 3 cut(s) 38, 106, 605
PspN4I GGNNCC 2 cut(s) 359, 1153
PspPI GGNCC 3 cut(s) 110, 197, 1194
PstI CTGCAG 1 cut(s) 1102
PsuI RGATCY 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 937
SacI GAGCTC 1 cut(s) 864
SaqAI TTAA 4 cut(s) 203, 999, 1074, 1185
SatI GCNGC 2 cut(s) 493, 528
Sau3AI GATC 6 cut(s) 48, 283, 331, 357, 639, 694
Sau96I GGNCC 3 cut(s) 110, 197, 1194
ScrFI CCNGG 4 cut(s) 40, 108, 607, 1229
SduI GDGCHC 3 cut(s) 328, 864, 1174
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 3 cut(s) 414, 421, 615
SfcI CTRYAG 1 cut(s) 1098
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 937
Sse9I AATT 8 cut(s) 69, 189, 287, 547, 573, 989, 1008, 1143
SsiI CCGC 1 cut(s) 119
SspI AATATT 1 cut(s) 634
SspMI CTAG 1 cut(s) 1047
SstI GAGCTC 1 cut(s) 864
StyD4I CCNGG 4 cut(s) 38, 106, 605, 1227
StyI CCWWGG 2 cut(s) 255, 353
TaaI ACNGT 2 cut(s) 854, 1159
TaqI TCGA 3 cut(s) 322, 642, 791
TasI AATT 8 cut(s) 69, 189, 287, 547, 573, 989, 1008, 1143
TfiI GAWTC 6 cut(s) 314, 476, 797, 1034, 1130, 1232
Tru1I TTAA 4 cut(s) 203, 999, 1074, 1185
Tru9I TTAA 4 cut(s) 203, 999, 1074, 1185
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 492, 527
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 5 cut(s) 17, 182, 237, 877, 1224
TspRI CASTG 1 cut(s) 859
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 1083
XspI CTAG 1 cut(s) 1047
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.