Rorug07G0058800

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001080
Physical Location & Seq
Reverse (-)
4236320 .. 4237528
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0058800.1

Sequence Viewer

Length: 1209 bp
ATGGGAATCGGAATAAGCAAACTAGCAAGTGCCATCTCTTGTTTTACCAGCAAACAAGTAAGAGTTCCATCTTCTTTGGCCGGGAATCAAGATCTCGTAAGAGAAATCCTCTCAAAATTACCTGTCAAATCTTTAGTTAGGTTTAGGTGCGTATCAAAAGAGTGGTATGCTCTCCTAAACCAAGAGTTTATTCTGAACATCAATCGAAATTACCTTCCCAATCTTTGTTTACTCTACGGTCAGAATATTGTAAGTGGACATCATCATCATGAGTTCTCATTGCTTGGCAGAAAAGTCGACACACTTTCGAGACTAGAGTTTACGGCATCTGTCCTCGATGATTCGGTTGAGAAGATATATATTGTGGGATCTAGTAATGGTTTAGTCTGCCTTCATTTTCTTGGAGATCGAACCAAAACGGAGTCAATCATCGTATGGAACCCAGTAACAGAGCAATACAGGAAACTTCCTAAGCCATTGTCTTTTGAGTGGGATAAGCTGACCGAACCACTTGTAGGTTTTGGGTTCATTCAGGACCATGGCATGAATAGTACCGATTACAAAGTGGTGAGGATTTCAAGAAGCAAAGGTGATATAAGACTTGGTTTAGTTGGTTATGTAACCCAAGTCTTCACCCGAAGTGCAAAATCATGGAGAGTAGTTAAAGAGTGTAACCCATCACGTTATCTGTTTTATAAACAGTCTTCCATTACTTTGAATGGAGTGTTGTATTCCTTGGCATGGACTAGGACGGGCGTCAACATGGCATACAGCGTTTTCTCATTCAATCTGCATGATGAGGTATTTCATAACATACAGTTACCGCAGTCTAGTACTATCAGTGTTGGAAGACTCTTTGTATGGAACAATTTGGTTGCCTATTCGACATGGGCTGATCATAGTTGCCAGTATGATGTTTGGGTGATGACAACAGAATCTAGAGATGATACACAAATGCCAACTAACTGGAATTGGACTAAACAAGTTACAATCAAACCTCCGATTAGATGGTATTATGGACCTCCCTCTGGAGTTTGGAATGATCAATTTATTTTTTACAAGGGCCATACTCACAGTAAACGAGGATCTGAACTATATCTGTATACGTATGACCTTGCAGATCAGAAAGAGAGGATGCTTTTAGGACCAGAAACTGATTACTGTTGCCTTCAAGTGGTAGATTACGTGGAGAGCCTAGTTCCGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

402

Amino Acids

46.24

Weight (kDa)

8.74

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 60 2.5e-08 F-box domain
FBA_3 PF08268 106 - 334 5e-19 F-box associated beta propeller domain
FBA_1 PF07734 109 - 402 6.2e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AccI GTMKAC 2 cut(s) 297, 1103
AciI CCGC 1 cut(s) 824
AclWI GGATC 2 cut(s) 376, 1093
AcoI YGGCCR 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 756
AfaI GTAC 2 cut(s) 553, 835
AfiI CCNNNNNNNGG 5 cut(s) 515, 741, 1028, 1174, 1201
AgsI TTSAA 4 cut(s) 579, 718, 787, 1172
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 1 cut(s) 499
AluI AGCT 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 376, 1093
AlwNI CAGNNNCTG 1 cut(s) 1154
AoxI GGCC 2 cut(s) 78, 1063
AspS9I GGNCC 4 cut(s) 535, 1019, 1063, 1145
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 4 cut(s) 580, 602, 625, 934
AvaII GGWCC 3 cut(s) 535, 1019, 1145
BbsI GAAGAC 3 cut(s) 622, 696, 856
BccI CCATC 4 cut(s) 41, 76, 685, 1002
BceAI ACGGC 1 cut(s) 339
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BclI TGATCA 2 cut(s) 895, 1042
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 7 cut(s) 23, 314, 372, 747, 831, 939, 1196
BglII AGATCT 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 3 cut(s) 535, 1019, 1145
BmgT120I GGNCC 4 cut(s) 535, 1019, 1063, 1145
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 82
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 2 cut(s) 335, 1125
BmuI ACTGGG 1 cut(s) 437
BoxI GACNNNNGTC 1 cut(s) 755
BpiI GAAGAC 3 cut(s) 622, 696, 856
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 1 cut(s) 1050
Bpu10I CCTNAGC 1 cut(s) 471
BpuMI CCSGG 1 cut(s) 82
BsaAI YACGTR 2 cut(s) 1107, 1186
BsaHI GRCGYC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 538, 735
BsaWI WCCGGW 1 cut(s) 1201
Bsc4I CCNNNNNNNGG 5 cut(s) 515, 741, 1028, 1174, 1201
Bse1I ACTGG 3 cut(s) 443, 907, 971
Bse3DI GCAATG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 538, 735
BseGI GGATG 1 cut(s) 1140
BseLI CCNNNNNNNGG 5 cut(s) 515, 741, 1028, 1174, 1201
BseMI GCAATG 1 cut(s) 278
BseNI ACTGG 3 cut(s) 443, 907, 971
BshFI GGCC 2 cut(s) 80, 1065
BsiSI CCGG 2 cut(s) 81, 1202
BslI CCNNNNNNNGG 5 cut(s) 515, 741, 1028, 1174, 1201
BsmAI GTCTC 1 cut(s) 304
BsnI GGCC 2 cut(s) 80, 1065
Bsp143I GATC 7 cut(s) 91, 368, 406, 895, 1042, 1085, 1120
Bsp19I CCATGG 1 cut(s) 538
BspACI CCGC 1 cut(s) 824
BspANI GGCC 2 cut(s) 80, 1065
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 440
BspPI GGATC 2 cut(s) 376, 1093
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 3 cut(s) 443, 907, 971
BssECI CCNNGG 2 cut(s) 538, 735
BssMI GATC 7 cut(s) 91, 368, 406, 895, 1042, 1085, 1120
BssNAI GTATAC 1 cut(s) 1104
BssNI GRCGYC 1 cut(s) 756
BssT1I CCWWGG 2 cut(s) 538, 735
Bst1107I GTATAC 1 cut(s) 1104
Bst4CI ACNGT 5 cut(s) 239, 702, 819, 1076, 1163
BstACI GRCGYC 1 cut(s) 756
BstBAI YACGTR 2 cut(s) 1107, 1186
BstDEI CTNAG 1 cut(s) 471
BstDSI CCRYGG 1 cut(s) 538
BstF5I GGATG 1 cut(s) 1140
BstKTI GATC 7 cut(s) 94, 371, 409, 898, 1045, 1088, 1123
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 7 cut(s) 91, 368, 406, 895, 1042, 1085, 1120
BstPAI GACNNNNGTC 1 cut(s) 755
BstSCI CCNGG 1 cut(s) 80
BstSNI TACGTA 1 cut(s) 1107
BstV2I GAAGAC 3 cut(s) 622, 696, 856
BstX2I RGATCY 3 cut(s) 91, 368, 1085
BstXI CCANNNNNNTGG 1 cut(s) 966
BstYI RGATCY 3 cut(s) 91, 368, 1085
BstZ17I GTATAC 1 cut(s) 1104
BsuRI GGCC 2 cut(s) 80, 1065
BtgI CCRYGG 1 cut(s) 538
BtsCI GGATG 1 cut(s) 1140
BtsIMutI CAGTG 1 cut(s) 847
CaiI CAGNNNCTG 1 cut(s) 1154
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 4 cut(s) 535, 1019, 1063, 1145
CseI GACGC 1 cut(s) 745
Csp6I GTAC 2 cut(s) 552, 834
CviAII CATG 8 cut(s) 269, 539, 544, 651, 741, 763, 794, 888
CviJI RGCY 6 cut(s) 80, 475, 499, 893, 1065, 1194
CviKI_1 RGCY 6 cut(s) 80, 475, 499, 893, 1065, 1194
CviQI GTAC 2 cut(s) 552, 834
DdeI CTNAG 1 cut(s) 471
DpnI GATC 7 cut(s) 93, 370, 408, 897, 1044, 1087, 1122
DpnII GATC 7 cut(s) 91, 368, 406, 895, 1042, 1085, 1120
EaeI YGGCCR 1 cut(s) 78
Eco105I TACGTA 1 cut(s) 1107
Eco130I CCWWGG 2 cut(s) 538, 735
Eco47I GGWCC 3 cut(s) 535, 1019, 1145
EcoT14I CCWWGG 2 cut(s) 538, 735
ErhI CCWWGG 2 cut(s) 538, 735
FaeI CATG 8 cut(s) 272, 542, 547, 654, 744, 766, 797, 891
FatI CATG 8 cut(s) 268, 538, 543, 650, 740, 762, 793, 887
FbaI TGATCA 2 cut(s) 895, 1042
FblI GTMKAC 2 cut(s) 297, 1103
FokI GGATG 1 cut(s) 1147
FspBI CTAG 7 cut(s) 23, 314, 372, 747, 831, 939, 1196
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 80, 1065
HapII CCGG 2 cut(s) 81, 1202
HgaI GACGC 1 cut(s) 745
Hin1I GRCGYC 1 cut(s) 756
Hin1II CATG 8 cut(s) 272, 542, 547, 654, 744, 766, 797, 891
HincII GTYRAC 2 cut(s) 298, 760
HindII GTYRAC 2 cut(s) 298, 760
HinfI GANTC 6 cut(s) 6, 85, 341, 422, 852, 935
HpaII CCGG 2 cut(s) 81, 1202
HphI GGTGA 4 cut(s) 580, 602, 625, 934
Hpy166II GTNNAC 7 cut(s) 230, 257, 298, 321, 760, 1079, 1104
Hpy188I TCNGA 6 cut(s) 11, 195, 243, 1002, 1090, 1125
Hpy188III TCNNGA 7 cut(s) 89, 269, 309, 533, 579, 939, 1029
Hpy8I GTNNAC 7 cut(s) 230, 257, 298, 321, 760, 1079, 1104
HpyAV CCTTC 3 cut(s) 224, 401, 1178
HpyCH4III ACNGT 5 cut(s) 239, 702, 819, 1076, 1163
HpyCH4IV ACGT 3 cut(s) 682, 1106, 1185
HpyCH4V TGCA 3 cut(s) 644, 793, 1118
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 3 cut(s) 682, 1106, 1185
Hsp92I GRCGYC 1 cut(s) 756
Hsp92II CATG 8 cut(s) 272, 542, 547, 654, 744, 766, 797, 891
Ksp22I TGATCA 2 cut(s) 895, 1042
Kzo9I GATC 7 cut(s) 91, 368, 406, 895, 1042, 1085, 1120
LweI GCATC 2 cut(s) 335, 1125
MaeI CTAG 7 cut(s) 23, 314, 372, 747, 831, 939, 1196
MaeII ACGT 3 cut(s) 682, 1106, 1185
MaeIII GTNAC 5 cut(s) 445, 619, 671, 819, 985
MalI GATC 7 cut(s) 93, 370, 408, 897, 1044, 1087, 1122
MboI GATC 7 cut(s) 91, 368, 406, 895, 1042, 1085, 1120
MboII GAAGA 5 cut(s) 63, 364, 622, 696, 861
MflI RGATCY 3 cut(s) 91, 368, 1085
MluCI AATT 5 cut(s) 116, 208, 868, 970, 1046
MlyI GAGTC 2 cut(s) 431, 846
MmeI TCCRAC 1 cut(s) 826
MnlI CCTC 9 cut(s) 119, 344, 564, 793, 1008, 1032, 1036, 1076, 1125
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 2 cut(s) 81, 1202
MspR9I CCNGG 1 cut(s) 82
NciI CCSGG 1 cut(s) 82
NcoI CCATGG 1 cut(s) 538
NdeII GATC 7 cut(s) 91, 368, 406, 895, 1042, 1085, 1120
NlaIII CATG 8 cut(s) 272, 542, 547, 654, 744, 766, 797, 891
NlaIV GGNNCC 1 cut(s) 440
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 4 cut(s) 6, 85, 341, 935
PleI GAGTC 2 cut(s) 430, 846
PpsI GAGTC 2 cut(s) 430, 846
Ppu21I YACGTR 2 cut(s) 1107, 1186
PshAI GACNNNNGTC 1 cut(s) 755
PsiI TTATAA 1 cut(s) 696
PspN4I GGNNCC 1 cut(s) 440
PspPI GGNCC 4 cut(s) 535, 1019, 1063, 1145
PstNI CAGNNNCTG 1 cut(s) 1154
PsuI RGATCY 3 cut(s) 91, 368, 1085
RsaI GTAC 2 cut(s) 553, 835
RsaNI GTAC 2 cut(s) 552, 834
RseI CAYNNNNRTG 1 cut(s) 267
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 663
Sau3AI GATC 7 cut(s) 91, 368, 406, 895, 1042, 1085, 1120
Sau96I GGNCC 4 cut(s) 535, 1019, 1063, 1145
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 2 cut(s) 431, 846
ScrFI CCNGG 1 cut(s) 82
SfaNI GCATC 2 cut(s) 335, 1125
SinI GGWCC 3 cut(s) 535, 1019, 1145
SmiMI CAYNNNNRTG 1 cut(s) 267
SnaBI TACGTA 1 cut(s) 1107
Sse9I AATT 5 cut(s) 116, 208, 868, 970, 1046
SsiI CCGC 1 cut(s) 824
SspI AATATT 1 cut(s) 247
SspMI CTAG 7 cut(s) 23, 314, 372, 747, 831, 939, 1196
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 2 cut(s) 538, 735
TaaI ACNGT 5 cut(s) 239, 702, 819, 1076, 1163
TaiI ACGT 3 cut(s) 685, 1109, 1188
TaqI TCGA 6 cut(s) 205, 297, 308, 336, 409, 884
TaqII GACCGA 1 cut(s) 518
TasI AATT 5 cut(s) 116, 208, 868, 970, 1046
TatI WGTACW 1 cut(s) 833
TfiI GAWTC 4 cut(s) 6, 85, 341, 935
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 1 cut(s) 847
TspDTI ATGAA 4 cut(s) 383, 517, 560, 797
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 847
VpaK11BI GGWCC 3 cut(s) 535, 1019, 1145
XbaI TCTAGA 1 cut(s) 938
XmiI GTMKAC 2 cut(s) 297, 1103
XspI CTAG 7 cut(s) 23, 314, 372, 747, 831, 939, 1196
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.