AT1G48410

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001348
Physical Location & Seq
Reverse (-)
17885633 .. 17892632
7000 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48410.2

Sequence Viewer

Length: 3147 bp
ATGGTGAGAAAGAGAAGAACGGATGCTCCATCTGAAGGAGGTGAAGGCTCTGGGTCTCGTGAAGCTGGTCCAGTCTCAGGTGGTGGACGTGGTTCACAGCGAGGTGGTTTCCAGCAGGGAGGAGGACAACACCAAGGTGGAAGGGGTTATACTCCTCAACCTCAACAGGGAGGTCGTGGTGGTCGTGGATATGGGCAACCACCACAACAGCAACAACAGTATGGAGGACCACAAGAGTACCAAGGAAGAGGAAGAGGAGGACCTCCTCATCAAGGAGGTCGAGGAGGGTATGGCGGTGGCCGTGGAGGTGGACCTTCTTCTGGACCACCGCAGAGACAATCAGTTCCCGAGCTGCATCAAGCTACCTCACCTACTTATCAAGCGGTGTCTTCTCAGCCTACACTGTCTGAGGTGAGTCCTACCCAGGTACCAGAACCTACTGTTCTGGCTCAGCAATTTGAACAACTCTCTGTTGAACAAGGAGCTCCCAGTCAGGCAATCCAGCCTATACCTTCTTCTAGCAAGGCTTTCAAGTTTCCAATGAGGCCTGGTAAAGGACAGAGTGGAAAGCGTTGCATTGTGAAGGCTAACCATTTCTTTGCTGAACTGCCTGATAAGGATTTGCACCATTATGATGTTACCATTACTCCGGAAGTTACATCAAGGGGTGTCAATCGTGCTGTGATGAAACAACTTGTTGATAATTATCGTGATTCTCACCTTGGAAGTCGTCTTCCAGCGTATGATGGTCGAAAAAGTCTTTACACTGCTGGTCCACTTCCCTTTAACTCCAAGGAGTTCAGAATCAATCTTCTTGACGAAGAAGTAGGGGCTGGAGGTCAAAGACGAGAAAGGGAATTTAAAGTTGTGATCAAGCTAGTTGCACGTGCTGATCTGCATCACCTAGGAATGTTTTTGGAGGGGAAACAATCAGATGCCCCACAGGAAGCTCTGCAGGTTCTTGACATTGTTCTTCGTGAGCTGCCGACCTCTAGGTATATTCCGGTGGGCCGGTCCTTTTATTCCCCTGATATAGGAAAAAAACAATCATTGGGGGATGGCTTGGAGAGCTGGCGTGGATTCTACCAAAGCATTCGTCCTACACAGATGGGCTTATCACTCAATATTGATATGTCATCGACAGCCTTCATAGAGGCAAACCCTGTGATTCAGTTTGTCTGTGATTTGCTTAACCGGGATATTTCTTCTCGACCTTTATCTGATGCTGATCGTGTTAAGATAAAAAAGGCTCTTAGAGGTGTCAAAGTTGAAGTGACTCATCGAGGAAACATGCGCCGGAAGTACCGCATTTCCGGTTTGACTGCTGTGGCCACTCGGGAATTGACATTCCCAGTAGATGAAAGAAATACTCAGAAATCTGTTGTAGAATACTTCCACGAAACATATGGTTTTCGCATTCAGCACACTCAACTACCATGCTTGCAAGTTGGGAATTCTAATAGGCCTAATTACTTACCAATGGAGGTATGCAAGATTGTTGAAGGCCAGCGGTATTCCAAAAGATTGAATGAGAGACAGATCACTGCTTTGCTGAAGGTTACCTGTCAGCGCCCGATAGATCGAGAAAAAGATATCTTACAGACGGTGCAACTCAATGATTATGCTAAAGATAATTATGCTCAAGAGTTTGGCATCAAAATAAGTACTTCTCTGGCTTCTGTTGAGGCTCGTATACTGCCTCCTCCATGGCTTAAGTACCACGAGTCTGGAAGGGAAGGGACTTGTCTGCCACAAGTTGGTCAATGGAACATGATGAATAAGAAAATGATCAATGGTGGAACGGTGAATAATTGGATCTGCATCAACTTTTCTAGGCAAGTGCAGGACAATCTAGCGCGTACATTTTGTCAGGAACTTGCTCAAATGTGTTACGTATCTGGCATGGCATTTAATCCGGAACCAGTCCTCCCACCAGTCAGTGCTCGCCCTGAGCAAGTAGAGAAGGTCTTGAAGACTAGATATCATGATGCCACATCAAAACTCTCCCAAGGAAAAGAAATTGATCTGCTTATTGTCATTCTGCCCGATAATAATGGATCATTATACGGTGATTTGAAACGCATATGTGAGACTGAACTCGGCATAGTCTCTCAATGTTGCCTGACAAAGCATGTCTTTAAGATGAGCAAACAATACATGGCTAATGTTGCGCTGAAGATTAATGTGAAGGTTGGAGGAAGAAACACAGTGCTTGTTGATGCTCTATCTAGGCGGATTCCTCTAGTCAGTGATCGACCCACCATTATATTTGGTGCTGATGTTACCCACCCTCACCCTGGAGAGGATTCAAGCCCATCTATTGCTGCTGTTGTGGCATCTCAGGATTGGCCTGAAATCACTAAATATGCTGGATTAGTTTGCGCTCAAGCGCATAGGCAGGAGCTCATTCAGGATCTGTTCAAAGAGTGGAAGGATCCTCAGAAAGGTGTGGTGACTGGTGGCATGATAAAGGAGTTGCTCATAGCCTTCCGTAGATCAACTGGGCATAAACCACTAAGGATCATCTTCTACAGGGATGGAGTCAGTGAGGGACAATTTTACCAAGTTTTGCTCTATGAACTTGATGCCATCCGCAAGGCCTGTGCTTCGCTGGAAGCAGGTTATCAACCACCAGTGACATTTGTGGTGGTGCAGAAGCGTCATCACACGAGGCTGTTTGCTCAGAACCACAATGATCGCCATTCGGTGGACAGAAGTGGGAATATTTTACCTGGCACTGTTGTGGACTCTAAAATCTGCCACCCTACAGAGTTTGACTTTTACCTCTGTAGTCATGCTGGTATTCAGGGCACTTCTCGACCTGCTCATTACCACGTTCTTTGGGATGAGAACAACTTTACTGCAGATGGACTTCAATCTCTGACCAATAACTTATGTTACACGTATGCAAGATGCACACGCTCAGTTTCAATTGTTCCCCCTGCATATTATGCACATCTAGCAGCTTTTAGGGCTCGATTCTACATGGAGCCAGAGACATCAGACAGTGGCTCAATGGCTAGTGGGAGCATGGCACGTGGAGGTGGAATGGCTGGTAGAAGCACACGCGGGCCTAATGTCAATGCTGCAGTGAGGCCACTCCCAGCTCTGAAAGAGAATGTGAAGCGTGTCATGTTCTACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009628 GO:0009639 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009892 GO:0009954 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010051 GO:0010218 GO:0010305 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0010817 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0019222 GO:0022622 GO:0030154 GO:0031047 GO:0032501 GO:0032502 GO:0034641 GO:0035194 GO:0035195 GO:0035198 GO:0035821 GO:0040029 GO:0042221 GO:0042445 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048519 GO:0048731 GO:0048827 GO:0048830 GO:0048856 GO:0048863 GO:0048864 GO:0048869 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0061980 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0099402 GO:0140098 GO:1901360 GO:1901363 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

1048

Amino Acids

116.19

Weight (kDa)

9.38

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly-rich_Ago1 PF12764 75 - 172 1e-24 Glycine-rich region of argonaut
ArgoN PF16486 190 - 325 2e-38 N-terminal domain of argonaute
ArgoL1 PF08699 337 - 387 8.9e-22 Argonaute linker 1 domain
PAZ PF02170 411 - 519 6.5e-30 PAZ domain
ArgoL2 PF16488 529 - 575 2.2e-16 Argonaute linker 2 domain
ArgoMid PF16487 586 - 661 1.4e-10 Mid domain of argonaute
Piwi PF02171 679 - 998 2.7e-114 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 946, 2609, 2830
Acc65I GGTACC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 427
AccB7I CCANNNNNTGG 2 cut(s) 1757, 2707
AccI GTMKAC 1 cut(s) 1693
AccII CGCG 2 cut(s) 1858, 3069
AccIII TCCGGA 2 cut(s) 649, 1915
AciI CCGC 8 cut(s) 294, 329, 383, 1306, 1510, 2233, 2593, 3069
AclWI GGATC 6 cut(s) 1823, 2065, 2421, 2429, 2442, 2528
AcoI YGGCCR 2 cut(s) 298, 1329
AcsI RAATTY 2 cut(s) 857, 1453
AcuI CTGAAG 3 cut(s) 54, 1574, 2195
AcvI CACGTG 2 cut(s) 887, 3038
AfaI GTAC 6 cut(s) 239, 429, 1304, 1666, 1718, 1861
AflII CTTAAG 1 cut(s) 1712
AflIII ACRYGT 1 cut(s) 2901
AjiI CACGTC 1 cut(s) 89
AjnI CCWGG 4 cut(s) 423, 547, 2296, 2731
AleI CACNNNNGTG 2 cut(s) 135, 2741
AloI GAACNNNNNNTCC 4 cut(s) 10, 42, 1911, 1943
Alw21I GWGCWC 3 cut(s) 487, 1945, 2406
Alw26I GTCTC 7 cut(s) 60, 79, 328, 1528, 2084, 2113, 2990
AlwI GGATC 6 cut(s) 1823, 2065, 2421, 2429, 2442, 2528
AlwNI CAGNNNCTG 1 cut(s) 2416
Ama87I CYCGRG 2 cut(s) 347, 1335
Aor13HI TCCGGA 2 cut(s) 649, 1915
ApeKI GCWGC 5 cut(s) 352, 982, 2324, 2963, 3086
ApoI RAATTY 2 cut(s) 857, 1453
ArsI GACNNNNNNTTYG 2 cut(s) 1081, 1113
AseI ATTAAT 1 cut(s) 2181
Asp718I GGTACC 1 cut(s) 427
AspA2I CCTAGG 1 cut(s) 904
AspLEI GCGC 6 cut(s) 1296, 1572, 1858, 2173, 2384, 2392
AspS9I GGNCC 9 cut(s) 68, 227, 260, 311, 323, 773, 1009, 1014, 3071
AsuC2I CCSGG 1 cut(s) 1196
AvaI CYCGRG 2 cut(s) 347, 1335
AvaII GGWCC 7 cut(s) 68, 227, 260, 311, 323, 773, 1014
AvrII CCTAGG 1 cut(s) 904
BaeGI GKGCMC 1 cut(s) 2813
BaeI ACNNNNGTAYC 4 cut(s) 221, 254, 411, 444
BalI TGGCCA 1 cut(s) 1331
BamHI GGATCC 1 cut(s) 2434
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 3 cut(s) 487, 2406, 2977
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BauI CACGAG 3 cut(s) 57, 1721, 2668
BbrPI CACGTG 2 cut(s) 887, 3038
BbsI GAAGAC 3 cut(s) 381, 725, 1979
Bbv12I GWGCWC 3 cut(s) 487, 1945, 2406
BbvI GCAGC 5 cut(s) 339, 969, 2311, 2975, 3073
BccI CCATC 8 cut(s) 37, 740, 1052, 1102, 2323, 2531, 2597, 2861
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 4 cut(s) 425, 549, 2298, 2733
BclI TGATCA 2 cut(s) 870, 1788
BcnI CCSGG 1 cut(s) 1196
BcoDI GTCTC 7 cut(s) 60, 79, 328, 1528, 2084, 2113, 2990
BfmI CTRYAG 6 cut(s) 953, 2530, 2766, 2788, 2862, 3087
BfoI RGCGCY 1 cut(s) 1573
BfrI CTTAAG 1 cut(s) 1712
BfuAI ACCTGC 3 cut(s) 946, 2609, 2830
BisI GCNGC 5 cut(s) 353, 983, 2325, 2964, 3087
BlnI CCTAGG 1 cut(s) 904
BlpI GCTNAGC 1 cut(s) 450
BlsI GCNGC 5 cut(s) 354, 984, 2326, 2965, 3088
BmcAI AGTACT 1 cut(s) 1666
Bme1390I CCNGG 5 cut(s) 425, 549, 1196, 2298, 2733
Bme18I GGWCC 7 cut(s) 68, 227, 260, 311, 323, 773, 1014
BmeT110I CYCGRG 2 cut(s) 347, 1335
BmgBI CACGTC 1 cut(s) 89
BmgT120I GGNCC 9 cut(s) 68, 227, 260, 311, 323, 773, 1009, 1014, 3071
BmiI GGNNCC 4 cut(s) 429, 1920, 2436, 2991
BmrFI CCNGG 5 cut(s) 425, 549, 1196, 2298, 2733
BmrI ACTGGG 3 cut(s) 483, 1346, 2511
BmuI ACTGGG 3 cut(s) 483, 1346, 2511
BpiI GAAGAC 3 cut(s) 381, 725, 1979
BpmI CTGGAG 2 cut(s) 855, 2319
Bpu10I CCTNAGC 1 cut(s) 1950
Bpu1102I GCTNAGC 1 cut(s) 450
BpuEI CTTGAG 2 cut(s) 1626, 2370
BpuMI CCSGG 1 cut(s) 1196
BsaAI YACGTR 4 cut(s) 887, 1894, 2904, 3038
BsaBI GATNNNNATC 4 cut(s) 705, 897, 1227, 1820
BsaI GGTCTC 1 cut(s) 60
BsaWI WCCGGW 4 cut(s) 649, 1003, 1313, 1915
BsaXI ACNNNNNCTCC 6 cut(s) 10, 40, 631, 661, 1911, 1941
Bse118I RCCGGY 1 cut(s) 1011
Bse1I ACTGG 8 cut(s) 71, 489, 1352, 1922, 1934, 2461, 2506, 2633
Bse8I GATNNNNATC 4 cut(s) 705, 897, 1227, 1820
BseAI TCCGGA 2 cut(s) 649, 1915
BseBI CCWGG 4 cut(s) 425, 549, 2298, 2733
BseGI GGATG 5 cut(s) 28, 1063, 2542, 2589, 2851
BseJI GATNNNNATC 4 cut(s) 705, 897, 1227, 1820
BseNI ACTGG 8 cut(s) 71, 489, 1352, 1922, 1934, 2461, 2506, 2633
BseRI GAGGAG 6 cut(s) 135, 144, 255, 270, 297, 1692
BseSI GKGCMC 1 cut(s) 2813
BseXI GCAGC 5 cut(s) 339, 969, 2311, 2975, 3073
BseYI CCCAGC 1 cut(s) 3103
BsgI GTGCAG 2 cut(s) 1862, 2672
Bsh1236I CGCG 2 cut(s) 1858, 3069
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 3 cut(s) 487, 1945, 2406
BsiHKCI CYCGRG 2 cut(s) 347, 1335
BsiSI CCGG 7 cut(s) 650, 1004, 1012, 1195, 1297, 1314, 1916
BslFI GGGAC 2 cut(s) 1753, 2565
BsmAI GTCTC 7 cut(s) 60, 79, 328, 1528, 2084, 2113, 2990
BsmFI GGGAC 2 cut(s) 1753, 2565
BsmI GAATGC 2 cut(s) 1092, 1416
Bso31I GGTCTC 1 cut(s) 60
BsoBI CYCGRG 2 cut(s) 347, 1335
Bsp1286I GDGCHC 5 cut(s) 487, 1945, 2406, 2813, 2977
Bsp13I TCCGGA 2 cut(s) 649, 1915
Bsp1720I GCTNAGC 1 cut(s) 450
Bsp19I CCATGG 1 cut(s) 1706
BspACI CCGC 8 cut(s) 294, 329, 383, 1306, 1510, 2233, 2593, 3069
BspEI TCCGGA 2 cut(s) 649, 1915
BspFNI CGCG 2 cut(s) 1858, 3069
BspHI TCATGA 1 cut(s) 1984
BspLI GGNNCC 4 cut(s) 429, 1920, 2436, 2991
BspMAI CTGCAG 3 cut(s) 957, 2866, 3091
BspMI ACCTGC 3 cut(s) 946, 2609, 2830
BspPI GGATC 6 cut(s) 1823, 2065, 2421, 2429, 2442, 2528
BspT107I GGYRCC 1 cut(s) 427
BspTI CTTAAG 1 cut(s) 1712
BspTNI GGTCTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 1011
BsrI ACTGG 8 cut(s) 71, 489, 1352, 1922, 1934, 2461, 2506, 2633
BssAI RCCGGY 1 cut(s) 1011
BssNAI GTATAC 1 cut(s) 1694
BssSI CACGAG 3 cut(s) 57, 1721, 2668
BssT1I CCWWGG 7 cut(s) 133, 241, 721, 792, 904, 1706, 2008
Bst1107I GTATAC 1 cut(s) 1694
Bst2BI CACGAG 3 cut(s) 57, 1721, 2668
Bst2UI CCWGG 4 cut(s) 425, 549, 2298, 2733
Bst4CI ACNGT 9 cut(s) 219, 405, 442, 1606, 1804, 2069, 2209, 2740, 3008
Bst6I CTCTTC 2 cut(s) 241, 247
BstAFI CTTAAG 1 cut(s) 1712
BstAPI GCANNNNNTGC 1 cut(s) 2951
BstBAI YACGTR 4 cut(s) 887, 1894, 2904, 3038
BstC8I GCNNGC 5 cut(s) 1073, 1442, 1508, 1945, 3071
BstDSI CCRYGG 2 cut(s) 301, 1706
BstEII GGTNACC 1 cut(s) 1558
BstENI CCTNNNNNAGG 4 cut(s) 270, 552, 1032, 2442
BstF5I GGATG 5 cut(s) 28, 1063, 2542, 2589, 2851
BstFNI CGCG 2 cut(s) 1858, 3069
BstH2I RGCGCY 1 cut(s) 1573
BstHHI GCGC 6 cut(s) 1296, 1572, 1858, 2173, 2384, 2392
BstMAI GTCTC 7 cut(s) 60, 79, 328, 1528, 2084, 2113, 2990
BstMWI GCNNNNNNNGC 6 cut(s) 1068, 2168, 2333, 2951, 2960, 2972
BstNI CCWGG 4 cut(s) 425, 549, 2298, 2733
BstNSI RCATGY 2 cut(s) 1294, 2135
BstPI GGTNACC 1 cut(s) 1558
BstSCI CCNGG 5 cut(s) 423, 547, 1194, 2296, 2731
BstSFI CTRYAG 6 cut(s) 953, 2530, 2766, 2788, 2862, 3087
BstSLI GKGCMC 1 cut(s) 2813
BstSNI TACGTA 1 cut(s) 1894
BstUI CGCG 2 cut(s) 1858, 3069
BstV1I GCAGC 5 cut(s) 339, 969, 2311, 2975, 3073
BstV2I GAAGAC 3 cut(s) 381, 725, 1979
BstX2I RGATCY 3 cut(s) 1815, 2413, 2434
BstXI CCANNNNNNTGG 1 cut(s) 1727
BstYI RGATCY 3 cut(s) 1815, 2413, 2434
BstZ17I GTATAC 1 cut(s) 1694
BtgI CCRYGG 2 cut(s) 301, 1706
BtrI CACGTC 1 cut(s) 89
BtsCI GGATG 5 cut(s) 28, 1063, 2542, 2589, 2851
BtsI GCAGTG 3 cut(s) 765, 1542, 3096
BveI ACCTGC 3 cut(s) 946, 2609, 2830
Cac8I GCNNGC 5 cut(s) 1073, 1442, 1508, 1945, 3071
CaiI CAGNNNCTG 1 cut(s) 2416
CciI TCATGA 1 cut(s) 1984
CfoI GCGC 6 cut(s) 1296, 1572, 1858, 2173, 2384, 2392
Cfr10I RCCGGY 1 cut(s) 1011
Cfr13I GGNCC 9 cut(s) 68, 227, 260, 311, 323, 773, 1009, 1014, 3071
CseI GACGC 1 cut(s) 2648
Csp6I GTAC 6 cut(s) 238, 428, 1303, 1665, 1717, 1860
CspCI CAANNNNNGTGG 2 cut(s) 2822, 2857
CviQI GTAC 6 cut(s) 238, 428, 1303, 1665, 1717, 1860
DraI TTTAAA 1 cut(s) 862
EaeI YGGCCR 2 cut(s) 298, 1329
Eam1104I CTCTTC 2 cut(s) 241, 247
EarI CTCTTC 2 cut(s) 241, 247
EciI GGCGGA 1 cut(s) 2248
Ecl136II GAGCTC 2 cut(s) 485, 2404
Eco105I TACGTA 1 cut(s) 1894
Eco130I CCWWGG 7 cut(s) 133, 241, 721, 792, 904, 1706, 2008
Eco147I AGGCCT 3 cut(s) 547, 1465, 2600
Eco24I GRGCYC 3 cut(s) 487, 2406, 2977
Eco31I GGTCTC 1 cut(s) 60
Eco32I GATATC 2 cut(s) 1594, 1982
Eco47I GGWCC 7 cut(s) 68, 227, 260, 311, 323, 773, 1014
Eco53kI GAGCTC 2 cut(s) 485, 2404
Eco57I CTGAAG 3 cut(s) 54, 1574, 2195
Eco72I CACGTG 2 cut(s) 887, 3038
Eco88I CYCGRG 2 cut(s) 347, 1335
Eco91I GGTNACC 1 cut(s) 1558
EcoICRI GAGCTC 2 cut(s) 485, 2404
EcoNI CCTNNNNNAGG 4 cut(s) 270, 552, 1032, 2442
EcoO109I RGGNCCY 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 1558
EcoRI GAATTC 1 cut(s) 1453
EcoRII CCWGG 4 cut(s) 423, 547, 2296, 2731
EcoRV GATATC 2 cut(s) 1594, 1982
EcoT14I CCWWGG 7 cut(s) 133, 241, 721, 792, 904, 1706, 2008
EcoT38I GRGCYC 3 cut(s) 487, 2406, 2977
ErhI CCWWGG 7 cut(s) 133, 241, 721, 792, 904, 1706, 2008
FalI AAGNNNNNCTT 2 cut(s) 2120, 2152
FaqI GGGAC 2 cut(s) 1753, 2565
FauI CCCGC 1 cut(s) 3062
FauNDI CATATG 2 cut(s) 1405, 2084
FbaI TGATCA 2 cut(s) 870, 1788
FblI GTMKAC 1 cut(s) 1693
Fnu4HI GCNGC 5 cut(s) 353, 983, 2325, 2964, 3087
FokI GGATG 5 cut(s) 35, 1070, 2549, 2576, 2858
FriOI GRGCYC 3 cut(s) 487, 2406, 2977
Fsp4HI GCNGC 5 cut(s) 353, 983, 2325, 2964, 3087
GlaI GCGC 6 cut(s) 1295, 1571, 1857, 2172, 2383, 2391
GluI GCNGC 5 cut(s) 353, 983, 2325, 2964, 3087
GsaI CCCAGC 1 cut(s) 3107
GsuI CTGGAG 2 cut(s) 855, 2319
HaeII RGCGCY 1 cut(s) 1573
HapII CCGG 7 cut(s) 650, 1004, 1012, 1195, 1297, 1314, 1916
HgaI GACGC 1 cut(s) 2648
HhaI GCGC 6 cut(s) 1296, 1572, 1858, 2173, 2384, 2392
Hin6I GCGC 6 cut(s) 1294, 1570, 1856, 2171, 2382, 2390
HinP1I GCGC 6 cut(s) 1294, 1570, 1856, 2171, 2382, 2390
HpaII CCGG 7 cut(s) 650, 1004, 1012, 1195, 1297, 1314, 1916
Hpy166II GTNNAC 7 cut(s) 86, 95, 311, 776, 1694, 2710, 2746
Hpy8I GTNNAC 7 cut(s) 86, 95, 311, 776, 1694, 2710, 2746
HpyCH4III ACNGT 9 cut(s) 219, 405, 442, 1606, 1804, 2069, 2209, 2740, 3008
HpyCH4IV ACGT 6 cut(s) 88, 886, 1893, 2835, 2903, 3037
HpyF10VI GCNNNNNNNGC 6 cut(s) 1068, 2168, 2333, 2951, 2960, 2972
HpySE526I ACGT 6 cut(s) 88, 886, 1893, 2835, 2903, 3037
HspAI GCGC 6 cut(s) 1294, 1570, 1856, 2171, 2382, 2390
Kpn2I TCCGGA 2 cut(s) 649, 1915
KpnI GGTACC 1 cut(s) 431
Ksp22I TGATCA 2 cut(s) 870, 1788
LmnI GCTCC 6 cut(s) 31, 482, 490, 2401, 2989, 3027
Lsp1109I GCAGC 5 cut(s) 339, 969, 2311, 2975, 3073
MaeII ACGT 6 cut(s) 88, 886, 1893, 2835, 2903, 3037
MaeIII GTNAC 9 cut(s) 637, 655, 1273, 1558, 1889, 2281, 2452, 2635, 2897
MfeI CAATTG 1 cut(s) 2931
MflI RGATCY 3 cut(s) 1815, 2413, 2434
MhlI GDGCHC 5 cut(s) 487, 1945, 2406, 2813, 2977
MlsI TGGCCA 1 cut(s) 1331
MluNI TGGCCA 1 cut(s) 1331
MlyI GAGTC 5 cut(s) 424, 1270, 1733, 2550, 2741
MmeI TCCRAC 1 cut(s) 2173
Mox20I TGGCCA 1 cut(s) 1331
MroI TCCGGA 2 cut(s) 649, 1915
MscI TGGCCA 1 cut(s) 1331
MseI TTAA 8 cut(s) 786, 861, 1191, 1236, 1713, 1911, 2139, 2181
MslI CAYNNNNRTG 4 cut(s) 135, 630, 633, 2741
Msp20I TGGCCA 1 cut(s) 1331
MspA1I CMGCKG 1 cut(s) 1510
MspCI CTTAAG 1 cut(s) 1712
MspI CCGG 7 cut(s) 650, 1004, 1012, 1195, 1297, 1314, 1916
MspR9I CCNGG 5 cut(s) 425, 549, 1196, 2298, 2733
MunI CAATTG 1 cut(s) 2931
Mva1269I GAATGC 2 cut(s) 1092, 1416
MvaI CCWGG 4 cut(s) 425, 549, 2298, 2733
MvnI CGCG 2 cut(s) 1858, 3069
MwoI GCNNNNNNNGC 6 cut(s) 1068, 2168, 2333, 2951, 2960, 2972
NciI CCSGG 1 cut(s) 1196
NcoI CCATGG 1 cut(s) 1706
NdeI CATATG 2 cut(s) 1405, 2084
NlaIV GGNNCC 4 cut(s) 429, 1920, 2436, 2991
NmeAIII GCCGAG 1 cut(s) 2079
NmuCI GTSAC 3 cut(s) 1273, 2452, 2635
NspI RCATGY 2 cut(s) 1294, 2135
OliI CACNNNNGTG 2 cut(s) 135, 2741
PagI TCATGA 1 cut(s) 1984
PceI AGGCCT 3 cut(s) 547, 1465, 2600
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PctI GAATGC 2 cut(s) 1092, 1416
PfeI GAWTC 7 cut(s) 713, 804, 1080, 1168, 2236, 2306, 2979
PflMI CCANNNNNTGG 2 cut(s) 1757, 2707
PkrI GCNGC 5 cut(s) 354, 984, 2326, 2965, 3088
PleI GAGTC 5 cut(s) 423, 1270, 1732, 2549, 2741
PmaCI CACGTG 2 cut(s) 887, 3038
PmlI CACGTG 2 cut(s) 887, 3038
PpsI GAGTC 5 cut(s) 423, 1270, 1732, 2549, 2741
Ppu21I YACGTR 4 cut(s) 887, 1894, 2904, 3038
PpuMI RGGWCCY 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 2181
Psp124BI GAGCTC 2 cut(s) 487, 2406
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 4 cut(s) 423, 547, 2296, 2731
PspCI CACGTG 2 cut(s) 887, 3038
PspEI GGTNACC 1 cut(s) 1558
PspFI CCCAGC 1 cut(s) 3103
PspGI CCWGG 4 cut(s) 423, 547, 2296, 2731
PspN4I GGNNCC 4 cut(s) 429, 1920, 2436, 2991
PspPI GGNCC 9 cut(s) 68, 227, 260, 311, 323, 773, 1009, 1014, 3071
PspPPI RGGWCCY 1 cut(s) 260
PstI CTGCAG 3 cut(s) 957, 2866, 3091
PstNI CAGNNNCTG 1 cut(s) 2416
PsuI RGATCY 3 cut(s) 1815, 2413, 2434
RsaI GTAC 6 cut(s) 239, 429, 1304, 1666, 1718, 1861
RsaNI GTAC 6 cut(s) 238, 428, 1303, 1665, 1717, 1860
RseI CAYNNNNRTG 4 cut(s) 135, 630, 633, 2741
SacI GAGCTC 2 cut(s) 487, 2406
SaqAI TTAA 8 cut(s) 786, 861, 1191, 1236, 1713, 1911, 2139, 2181
SatI GCNGC 5 cut(s) 353, 983, 2325, 2964, 3087
Sau96I GGNCC 9 cut(s) 68, 227, 260, 311, 323, 773, 1009, 1014, 3071
ScaI AGTACT 1 cut(s) 1666
SchI GAGTC 5 cut(s) 424, 1270, 1733, 2550, 2741
ScrFI CCNGG 5 cut(s) 425, 549, 1196, 2298, 2733
SduI GDGCHC 5 cut(s) 487, 1945, 2406, 2813, 2977
SfcI CTRYAG 6 cut(s) 953, 2530, 2766, 2788, 2862, 3087
SinI GGWCC 7 cut(s) 68, 227, 260, 311, 323, 773, 1014
SmiMI CAYNNNNRTG 4 cut(s) 135, 630, 633, 2741
SmlI CTYRAG 3 cut(s) 1641, 1712, 2385
SmoI CTYRAG 3 cut(s) 1641, 1712, 2385
SnaBI TACGTA 1 cut(s) 1894
SseBI AGGCCT 3 cut(s) 547, 1465, 2600
SsiI CCGC 8 cut(s) 294, 329, 383, 1306, 1510, 2233, 2593, 3069
SspI AATATT 2 cut(s) 1126, 2725
SstI GAGCTC 2 cut(s) 487, 2406
StuI AGGCCT 3 cut(s) 547, 1465, 2600
StyD4I CCNGG 5 cut(s) 423, 547, 1194, 2296, 2731
StyI CCWWGG 7 cut(s) 133, 241, 721, 792, 904, 1706, 2008
TaaI ACNGT 9 cut(s) 219, 405, 442, 1606, 1804, 2069, 2209, 2740, 3008
TaiI ACGT 6 cut(s) 91, 889, 1896, 2838, 2906, 3040
TaqI TCGA 9 cut(s) 280, 751, 1139, 1210, 1282, 1582, 2254, 2818, 2977
TatI WGTACW 1 cut(s) 1664
TfiI GAWTC 7 cut(s) 713, 804, 1080, 1168, 2236, 2306, 2979
Tru1I TTAA 8 cut(s) 786, 861, 1191, 1236, 1713, 1911, 2139, 2181
Tru9I TTAA 8 cut(s) 786, 861, 1191, 1236, 1713, 1911, 2139, 2181
TseFI GTSAC 3 cut(s) 1273, 2452, 2635
TseI GCWGC 5 cut(s) 352, 982, 2324, 2963, 3086
Tsp45I GTSAC 3 cut(s) 1273, 2452, 2635
TspDTI ATGAA 5 cut(s) 701, 1138, 1374, 1790, 2592
TspGWI ACGGA 2 cut(s) 35, 2480
Van91I CCANNNNNTGG 2 cut(s) 1757, 2707
Vha464I CTTAAG 1 cut(s) 1712
VpaK11BI GGWCC 7 cut(s) 68, 227, 260, 311, 323, 773, 1014
VspI ATTAAT 1 cut(s) 2181
XagI CCTNNNNNAGG 4 cut(s) 270, 552, 1032, 2442
XapI RAATTY 2 cut(s) 857, 1453
XceI RCATGY 2 cut(s) 1294, 2135
XcmI CCANNNNNNNNNTGG 2 cut(s) 1403, 2294
XmaJI CCTAGG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 1693
ZrmI AGTACT 1 cut(s) 1666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.