Rorug07G0155200

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001348
Physical Location & Seq
Forward (+)
12269885 .. 12270415
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0155200.1

Sequence Viewer

Length: 531 bp
ATGGCTGAGCTGATCAAACAGGCCTTGGCATTAGTCTACTCCAGAAAAGATGAAGACGCCGCAATGTTGAAAGCAGCGGAGGAGCGCAAACACCAGAAGAGAATCAAATTGCTTGTTTACATTGGGATTTTCATTGTGTTCCAAATCATAGTGATTACTGTGTTTGCTCTCACTGTGATGAAAGTTAAGTCCCCTAAGGTCAGGTTGGGTGCCATCAACGTCCAAACCCTCAACTCTGCCCATGCACCACCTTCATTTGACACAAGCTTCACGACCCAAATTAGGGTCAAGAACACAAATTGGGGTCCCTATAAATTTGATGAAGGCATTGCAACGTTCATGTACCAAGGTGTGGCTGTGGGGCAAGTTGTCATTCCAAAGAGCAAGGCTGATACGCGTTCCACCAAAAAGATCAATGTCGAAGTGAATTTGAGTACTGATGGATTGCCGAGCAATTCCAATCTTGAGAGTGAATTGAGTAACGGGGTGTTGACGCTGAGCAGTCAAGCTAAATTAATTGGAAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

176

Amino Acids

19.35

Weight (kDa)

9.79

Isoelectric Point (pI)

20.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 352
AccI GTMKAC 1 cut(s) 36
AccII CGCG 1 cut(s) 397
AciI CCGC 2 cut(s) 60, 77
AclI AACGTT 1 cut(s) 335
AcsI RAATTY 2 cut(s) 314, 427
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 344, 436
AfiI CCNNNNNNNGG 3 cut(s) 282, 283, 352
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 3 cut(s) 10, 267, 509
AluI AGCT 3 cut(s) 10, 267, 509
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 314, 427
AseI ATTAAT 1 cut(s) 515
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 305
AxyI CCTNAGG 1 cut(s) 195
BanI GGYRCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 221, 434
BclI TGATCA 1 cut(s) 12
BisI GCNGC 2 cut(s) 60, 75
BlpI GCTNAGC 2 cut(s) 6, 497
BlsI GCNGC 2 cut(s) 61, 76
BmcAI AGTACT 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 3 cut(s) 211, 306, 307
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 25
Bpu1102I GCTNAGC 2 cut(s) 6, 497
BpuEI CTTGAG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 24, 346
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 283, 352
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 2 cut(s) 69, 327
BseDI CCNNGG 2 cut(s) 24, 346
BseLI CCNNNNNNNGG 3 cut(s) 282, 283, 352
BseMI GCAATG 2 cut(s) 69, 327
BseMII CTCAG 1 cut(s) 488
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 397
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 209
BslFI GGGAC 2 cut(s) 175, 291
BslI CCNNNNNNNGG 3 cut(s) 282, 283, 352
BsmFI GGGAC 2 cut(s) 175, 291
BsnI GGCC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 12, 411
Bsp1720I GCTNAGC 2 cut(s) 6, 497
BspACI CCGC 2 cut(s) 60, 77
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 489
BspFNI CGCG 1 cut(s) 397
BspLI GGNNCC 3 cut(s) 211, 306, 307
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 2 cut(s) 69, 327
BssECI CCNNGG 2 cut(s) 24, 346
BssMI GATC 2 cut(s) 12, 411
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 24, 346
Bst4CI ACNGT 2 cut(s) 160, 175
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 6, 195, 497
BstFNI CGCG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 15, 414
BstMBI GATC 2 cut(s) 12, 411
BstUI CGCG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 60
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 171
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 2 cut(s) 65, 502
Csp6I GTAC 2 cut(s) 343, 435
CviAII CATG 2 cut(s) 242, 340
CviJI RGCY 7 cut(s) 5, 10, 23, 267, 356, 389, 509
CviKI_1 RGCY 7 cut(s) 5, 10, 23, 267, 356, 389, 509
CviQI GTAC 2 cut(s) 343, 435
DdeI CTNAG 3 cut(s) 6, 195, 497
DpnI GATC 2 cut(s) 14, 413
DpnII GATC 2 cut(s) 12, 411
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 24, 346
Eco147I AGGCCT 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 305
EcoT14I CCWWGG 2 cut(s) 24, 346
ErhI CCWWGG 2 cut(s) 24, 346
FaeI CATG 2 cut(s) 245, 343
FaiI YATR 4 cut(s) 149, 243, 312, 341
FaqI GGGAC 2 cut(s) 175, 291
FatI CATG 2 cut(s) 241, 339
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 60, 75
Fsp4HI GCNGC 2 cut(s) 60, 75
GlaI GCGC 1 cut(s) 86
GluI GCNGC 2 cut(s) 60, 75
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 1 cut(s) 23
HgaI GACGC 2 cut(s) 65, 502
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 245, 343
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 1 cut(s) 102
Hpy166II GTNNAC 3 cut(s) 37, 118, 492
Hpy188III TCNNGA 4 cut(s) 42, 271, 289, 464
Hpy8I GTNNAC 3 cut(s) 37, 118, 492
HpyAV CCTTC 2 cut(s) 261, 317
HpyCH4III ACNGT 2 cut(s) 160, 175
HpyCH4IV ACGT 2 cut(s) 219, 335
HpyCH4V TGCA 2 cut(s) 245, 332
HpyF3I CTNAG 3 cut(s) 6, 195, 497
HpySE526I ACGT 2 cut(s) 219, 335
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 245, 343
HspAI GCGC 1 cut(s) 85
KflI GGGWCCC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 2 cut(s) 12, 411
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 4 cut(s) 5, 55, 107, 187
Lsp1109I GCAGC 1 cut(s) 86
MaeII ACGT 2 cut(s) 219, 335
MaeIII GTNAC 1 cut(s) 479
MalI GATC 2 cut(s) 14, 413
MboI GATC 2 cut(s) 12, 411
MboII GAAGA 2 cut(s) 65, 109
MluCI AATT 9 cut(s) 107, 279, 298, 314, 427, 454, 473, 512, 516
MluI ACGCGT 1 cut(s) 395
MnlI CCTC 2 cut(s) 73, 239
MseI TTAA 3 cut(s) 186, 515, 529
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 77
MvnI CGCG 1 cut(s) 397
NdeII GATC 2 cut(s) 12, 411
NlaIII CATG 2 cut(s) 245, 343
NlaIV GGNNCC 3 cut(s) 211, 306, 307
NmeAIII GCCGAG 1 cut(s) 474
PceI AGGCCT 1 cut(s) 23
PfeI GAWTC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 2 cut(s) 61, 76
PpuMI RGGWCCY 1 cut(s) 305
PshBI ATTAAT 1 cut(s) 515
Psp1406I AACGTT 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 305
PspN4I GGNNCC 3 cut(s) 211, 306, 307
PspPI GGNCC 1 cut(s) 305
PspPPI RGGWCCY 1 cut(s) 305
RsaI GTAC 2 cut(s) 344, 436
RsaNI GTAC 2 cut(s) 343, 435
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 3 cut(s) 186, 515, 529
SatI GCNGC 2 cut(s) 60, 75
Sau3AI GATC 2 cut(s) 12, 411
Sau96I GGNCC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 436
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 9 cut(s) 107, 279, 298, 314, 427, 454, 473, 512, 516
SseBI AGGCCT 1 cut(s) 23
SsiI CCGC 2 cut(s) 60, 77
StuI AGGCCT 1 cut(s) 23
StyI CCWWGG 2 cut(s) 24, 346
TaaI ACNGT 2 cut(s) 160, 175
TaiI ACGT 2 cut(s) 222, 338
TaqI TCGA 1 cut(s) 420
TasI AATT 9 cut(s) 107, 279, 298, 314, 427, 454, 473, 512, 516
TatI WGTACW 1 cut(s) 434
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 3 cut(s) 186, 515, 529
Tru9I TTAA 3 cut(s) 186, 515, 529
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 6 cut(s) 66, 121, 194, 243, 328, 336
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 305
VspI ATTAAT 1 cut(s) 515
XapI RAATTY 2 cut(s) 314, 427
XmiI GTMKAC 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.