Belongs to the argonaute family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 115, 121 |
| Acc16I | TGCGCA | 1 cut(s) | 1475 |
| Acc36I | ACCTGC | 7 cut(s) | 115, 121, 522, 925, 1083, 1126, 3307 |
| AccB1I | GGYRCC | 2 cut(s) | 737, 3115 |
| AccBSI | CCGCTC | 3 cut(s) | 2123, 2143, 2564 |
| AccI | GTMKAC | 2 cut(s) | 944, 2925 |
| AccII | CGCG | 3 cut(s) | 844, 1257, 3262 |
| AclI | AACGTT | 1 cut(s) | 2073 |
| AclWI | GGATC | 6 cut(s) | 387, 1018, 1805, 2609, 2622, 3250 |
| AcoI | YGGCCR | 3 cut(s) | 304, 310, 454 |
| AcsI | RAATTY | 8 cut(s) | 380, 1037, 1055, 2005, 2415, 2951, 2982, 3035 |
| AcuI | CTGAAG | 4 cut(s) | 588, 964, 2168, 3326 |
| AcvI | CACGTG | 1 cut(s) | 1067 |
| AcyI | GRCGYC | 1 cut(s) | 2516 |
| AdeI | CACNNNGTG | 2 cut(s) | 1235, 1463 |
| AfaI | GTAC | 5 cut(s) | 1571, 1694, 2106, 2917, 3128 |
| AflIII | ACRYGT | 2 cut(s) | 1311, 2308 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1788 |
| AjiI | CACGTC | 2 cut(s) | 2311, 3221 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 885, 917, 1841, 1873 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1512, 1544 |
| AluBI | AGCT | 8 cut(s) | 45, 494, 1612, 1868, 2203, 2507, 3005, 3044 |
| AluI | AGCT | 8 cut(s) | 45, 494, 1612, 1868, 2203, 2507, 3005, 3044 |
| Alw21I | GWGCWC | 1 cut(s) | 3098 |
| Alw26I | GTCTC | 4 cut(s) | 1371, 1708, 2261, 2523 |
| Alw44I | GTGCAC | 1 cut(s) | 3094 |
| AlwI | GGATC | 6 cut(s) | 387, 1018, 1805, 2609, 2622, 3250 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 572 |
| Ama87I | CYCGRG | 2 cut(s) | 396, 1932 |
| ApaI | GGGCCC | 2 cut(s) | 256, 354 |
| ApaLI | GTGCAC | 1 cut(s) | 3094 |
| ApoI | RAATTY | 8 cut(s) | 380, 1037, 1055, 2005, 2415, 2951, 2982, 3035 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1261, 1293 |
| AseI | ATTAAT | 1 cut(s) | 2361 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 651, 977, 1092 |
| AspLEI | GCGC | 6 cut(s) | 933, 1257, 1476, 1885, 2786, 2841 |
| AsuC2I | CCSGG | 3 cut(s) | 397, 398, 1699 |
| AsuHPI | GGTGA | 7 cut(s) | 16, 50, 90, 544, 1247, 2258, 2455 |
| AvaI | CYCGRG | 2 cut(s) | 396, 1932 |
| AvaII | GGWCC | 4 cut(s) | 158, 191, 263, 470 |
| AxyI | CCTNAGG | 2 cut(s) | 54, 1122 |
| BaeGI | GKGCMC | 6 cut(s) | 256, 354, 2993, 3098, 3120, 3260 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2907, 2940 |
| BamHI | GGATCC | 1 cut(s) | 2614 |
| BanI | GGYRCC | 2 cut(s) | 737, 3115 |
| BanII | GRGCYC | 4 cut(s) | 256, 354, 2149, 3157 |
| BbrPI | CACGTG | 1 cut(s) | 1067 |
| Bbv12I | GWGCWC | 1 cut(s) | 3098 |
| BbvCI | CCTCAGC | 1 cut(s) | 597 |
| BceAI | ACGGC | 5 cut(s) | 291, 297, 441, 1990, 2982 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1769, 1803 |
| BclI | TGATCA | 2 cut(s) | 76, 2646 |
| BcnI | CCSGG | 3 cut(s) | 397, 398, 1699 |
| BcoDI | GTCTC | 4 cut(s) | 1371, 1708, 2261, 2523 |
| BfaI | CTAG | 4 cut(s) | 495, 1085, 2393, 2994 |
| BfmI | CTRYAG | 2 cut(s) | 1133, 3282 |
| BfoI | RGCGCY | 1 cut(s) | 2842 |
| BfuAI | ACCTGC | 7 cut(s) | 115, 121, 522, 925, 1083, 1126, 3307 |
| BglII | AGATCT | 1 cut(s) | 2272 |
| BlpI | GCTNAGC | 1 cut(s) | 490 |
| BmcAI | AGTACT | 2 cut(s) | 1571, 2106 |
| Bme18I | GGWCC | 4 cut(s) | 158, 191, 263, 470 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1788 |
| BmeT110I | CYCGRG | 2 cut(s) | 396, 1932 |
| BmgBI | CACGTC | 2 cut(s) | 2311, 3221 |
| BmrI | ACTGGG | 2 cut(s) | 2284, 2691 |
| BmsI | GCATC | 8 cut(s) | 309, 848, 1393, 1881, 2017, 2389, 2709, 2755 |
| BmuI | ACTGGG | 2 cut(s) | 2284, 2691 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1396 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 703, 735 |
| BpmI | CTGGAG | 3 cut(s) | 246, 2499, 2796 |
| Bpu10I | CCTNAGC | 2 cut(s) | 597, 1821 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 490 |
| BpuEI | CTTGAG | 3 cut(s) | 543, 682, 2505 |
| BpuMI | CCSGG | 3 cut(s) | 397, 398, 1699 |
| BsaAI | YACGTR | 1 cut(s) | 1067 |
| BsaBI | GATNNNNATC | 4 cut(s) | 635, 1407, 1838, 2091 |
| BsaHI | GRCGYC | 1 cut(s) | 2516 |
| BsaWI | WCCGGW | 1 cut(s) | 1342 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 517, 547 |
| Bse1I | ACTGG | 9 cut(s) | 436, 748, 808, 1173, 2102, 2290, 2531, 2686, 2813 |
| Bse21I | CCTNAGG | 2 cut(s) | 54, 1122 |
| Bse3DI | GCAATG | 1 cut(s) | 2178 |
| Bse8I | GATNNNNATC | 4 cut(s) | 635, 1407, 1838, 2091 |
| BseJI | GATNNNNATC | 4 cut(s) | 635, 1407, 1838, 2091 |
| BseMI | GCAATG | 1 cut(s) | 2178 |
| BseMII | CTCAG | 7 cut(s) | 62, 68, 504, 611, 1104, 1136, 1835 |
| BseNI | ACTGG | 9 cut(s) | 436, 748, 808, 1173, 2102, 2290, 2531, 2686, 2813 |
| BseSI | GKGCMC | 6 cut(s) | 256, 354, 2993, 3098, 3120, 3260 |
| BseX3I | CGGCCG | 1 cut(s) | 304 |
| BseYI | CCCAGC | 2 cut(s) | 545, 1608 |
| BsgI | GTGCAG | 6 cut(s) | 93, 99, 500, 558, 1047, 1061 |
| Bsh1236I | CGCG | 3 cut(s) | 844, 1257, 3262 |
| Bsh1285I | CGRYCG | 1 cut(s) | 307 |
| BshNI | GGYRCC | 2 cut(s) | 737, 3115 |
| BsiEI | CGRYCG | 1 cut(s) | 307 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3098 |
| BsiHKCI | CYCGRG | 2 cut(s) | 396, 1932 |
| BsiSI | CCGG | 3 cut(s) | 397, 1343, 1699 |
| BslFI | GGGAC | 2 cut(s) | 288, 2641 |
| BsmAI | GTCTC | 4 cut(s) | 1371, 1708, 2261, 2523 |
| BsmBI | CGTCTC | 1 cut(s) | 2523 |
| BsmFI | GGGAC | 2 cut(s) | 288, 2641 |
| BsoBI | CYCGRG | 2 cut(s) | 396, 1932 |
| Bsp120I | GGGCCC | 2 cut(s) | 252, 350 |
| Bsp1286I | GDGCHC | 8 cut(s) | 256, 354, 2149, 2993, 3098, 3120, 3157, 3260 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 490 |
| Bsp19I | CCATGG | 1 cut(s) | 1659 |
| BspCNI | CTCAG | 7 cut(s) | 61, 67, 503, 610, 1105, 1135, 1834 |
| BspFNI | CGCG | 3 cut(s) | 844, 1257, 3262 |
| BspHI | TCATGA | 2 cut(s) | 1576, 1900 |
| BspMAI | CTGCAG | 2 cut(s) | 1137, 3286 |
| BspMI | ACCTGC | 7 cut(s) | 115, 121, 522, 925, 1083, 1126, 3307 |
| BspPI | GGATC | 6 cut(s) | 387, 1018, 1805, 2609, 2622, 3250 |
| BspQI | GCTCTTC | 1 cut(s) | 238 |
| BspT107I | GGYRCC | 2 cut(s) | 737, 3115 |
| BsrBI | CCGCTC | 3 cut(s) | 2123, 2143, 2564 |
| BsrDI | GCAATG | 1 cut(s) | 2178 |
| BsrI | ACTGG | 9 cut(s) | 436, 748, 808, 1173, 2102, 2290, 2531, 2686, 2813 |
| BssNAI | GTATAC | 1 cut(s) | 945 |
| BssNI | GRCGYC | 1 cut(s) | 2516 |
| BssT1I | CCWWGG | 3 cut(s) | 205, 235, 1659 |
| Bst1107I | GTATAC | 1 cut(s) | 945 |
| Bst4CI | ACNGT | 8 cut(s) | 1463, 1786, 1944, 2334, 2389, 2887, 2920, 3338 |
| Bst6I | CTCTTC | 5 cut(s) | 8, 142, 238, 726, 3314 |
| BstACI | GRCGYC | 1 cut(s) | 2516 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3272, 3281 |
| BstBAI | YACGTR | 1 cut(s) | 1067 |
| BstC8I | GCNNGC | 8 cut(s) | 952, 1019, 1870, 1928, 2145, 2782, 3260, 3264 |
| BstDEI | CTNAG | 7 cut(s) | 48, 54, 490, 597, 1113, 1122, 1821 |
| BstDSI | CCRYGG | 5 cut(s) | 307, 313, 1462, 1659, 3111 |
| BstEII | GGTNACC | 3 cut(s) | 200, 230, 550 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 33, 57, 732 |
| BstFNI | CGCG | 3 cut(s) | 844, 1257, 3262 |
| BstH2I | RGCGCY | 1 cut(s) | 2842 |
| BstHHI | GCGC | 6 cut(s) | 933, 1257, 1476, 1885, 2786, 2841 |
| BstMAI | GTCTC | 4 cut(s) | 1371, 1708, 2261, 2523 |
| BstMCI | CGRYCG | 1 cut(s) | 307 |
| BstNSI | RCATGY | 2 cut(s) | 1315, 2784 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1396 |
| BstPI | GGTNACC | 3 cut(s) | 200, 230, 550 |
| BstSFI | CTRYAG | 2 cut(s) | 1133, 3282 |
| BstSLI | GKGCMC | 6 cut(s) | 256, 354, 2993, 3098, 3120, 3260 |
| BstUI | CGCG | 3 cut(s) | 844, 1257, 3262 |
| BstX2I | RGATCY | 4 cut(s) | 392, 1810, 2272, 2614 |
| BstYI | RGATCY | 4 cut(s) | 392, 1810, 2272, 2614 |
| BstZ17I | GTATAC | 1 cut(s) | 945 |
| BstZI | CGGCCG | 1 cut(s) | 304 |
| Bsu36I | CCTNAGG | 2 cut(s) | 54, 1122 |
| BtgI | CCRYGG | 5 cut(s) | 307, 313, 1462, 1659, 3111 |
| BtgZI | GCGATG | 1 cut(s) | 825 |
| BtrI | CACGTC | 2 cut(s) | 2311, 3221 |
| BtsI | GCAGTG | 1 cut(s) | 3291 |
| BveI | ACCTGC | 7 cut(s) | 115, 121, 522, 925, 1083, 1126, 3307 |
| Cac8I | GCNNGC | 8 cut(s) | 952, 1019, 1870, 1928, 2145, 2782, 3260, 3264 |
| CaiI | CAGNNNCTG | 1 cut(s) | 572 |
| CciI | TCATGA | 2 cut(s) | 1576, 1900 |
| CfoI | GCGC | 6 cut(s) | 933, 1257, 1476, 1885, 2786, 2841 |
| Cfr9I | CCCGGG | 1 cut(s) | 396 |
| CseI | GACGC | 2 cut(s) | 1739, 2505 |
| CsiI | ACCWGGT | 2 cut(s) | 160, 2911 |
| Csp6I | GTAC | 5 cut(s) | 1570, 1693, 2105, 2916, 3127 |
| CviQI | GTAC | 5 cut(s) | 1570, 1693, 2105, 2916, 3127 |
| DdeI | CTNAG | 7 cut(s) | 48, 54, 490, 597, 1113, 1122, 1821 |
| DraIII | CACNNNGTG | 2 cut(s) | 1235, 1463 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1788 |
| EaeI | YGGCCR | 3 cut(s) | 304, 310, 454 |
| EagI | CGGCCG | 1 cut(s) | 304 |
| Eam1104I | CTCTTC | 5 cut(s) | 8, 142, 238, 726, 3314 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1788 |
| EarI | CTCTTC | 5 cut(s) | 8, 142, 238, 726, 3314 |
| EclXI | CGGCCG | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 3 cut(s) | 205, 235, 1659 |
| Eco24I | GRGCYC | 4 cut(s) | 256, 354, 2149, 3157 |
| Eco47I | GGWCC | 4 cut(s) | 158, 191, 263, 470 |
| Eco52I | CGGCCG | 1 cut(s) | 304 |
| Eco57I | CTGAAG | 4 cut(s) | 588, 964, 2168, 3326 |
| Eco72I | CACGTG | 1 cut(s) | 1067 |
| Eco81I | CCTNAGG | 2 cut(s) | 54, 1122 |
| Eco88I | CYCGRG | 2 cut(s) | 396, 1932 |
| Eco91I | GGTNACC | 3 cut(s) | 200, 230, 550 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 33, 57, 732 |
| EcoO109I | RGGNCCY | 6 cut(s) | 221, 351, 373, 470, 569, 3291 |
| EcoO65I | GGTNACC | 3 cut(s) | 200, 230, 550 |
| EcoRI | GAATTC | 3 cut(s) | 380, 2415, 2982 |
| EcoT14I | CCWWGG | 3 cut(s) | 205, 235, 1659 |
| EcoT38I | GRGCYC | 4 cut(s) | 256, 354, 2149, 3157 |
| ErhI | CCWWGG | 3 cut(s) | 205, 235, 1659 |
| Esp3I | CGTCTC | 1 cut(s) | 2523 |
| FaqI | GGGAC | 2 cut(s) | 288, 2641 |
| FauI | CCCGC | 3 cut(s) | 109, 1010, 2136 |
| FauNDI | CATATG | 1 cut(s) | 3085 |
| FbaI | TGATCA | 2 cut(s) | 76, 2646 |
| FblI | GTMKAC | 2 cut(s) | 944, 2925 |
| FriOI | GRGCYC | 4 cut(s) | 256, 354, 2149, 3157 |
| FspBI | CTAG | 4 cut(s) | 495, 1085, 2393, 2994 |
| FspI | TGCGCA | 1 cut(s) | 1475 |
| GlaI | GCGC | 6 cut(s) | 932, 1256, 1475, 1884, 2785, 2840 |
| GsaI | CCCAGC | 2 cut(s) | 549, 1612 |
| GsuI | CTGGAG | 3 cut(s) | 246, 2499, 2796 |
| HaeII | RGCGCY | 1 cut(s) | 2842 |
| HapII | CCGG | 3 cut(s) | 397, 1343, 1699 |
| HgaI | GACGC | 2 cut(s) | 1739, 2505 |
| HhaI | GCGC | 6 cut(s) | 933, 1257, 1476, 1885, 2786, 2841 |
| Hin1I | GRCGYC | 1 cut(s) | 2516 |
| Hin6I | GCGC | 6 cut(s) | 931, 1255, 1474, 1883, 2784, 2839 |
| HinP1I | GCGC | 6 cut(s) | 931, 1255, 1474, 1883, 2784, 2839 |
| HincII | GTYRAC | 3 cut(s) | 1972, 1987, 2890 |
| HindII | GTYRAC | 3 cut(s) | 1972, 1987, 2890 |
| HinfI | GANTC | 7 cut(s) | 853, 893, 1260, 1849, 1983, 2486, 2927 |
| HpaI | GTTAAC | 1 cut(s) | 1972 |
| HpaII | CCGG | 3 cut(s) | 397, 1343, 1699 |
| HphI | GGTGA | 7 cut(s) | 16, 50, 90, 544, 1247, 2258, 2455 |
| Hpy166II | GTNNAC | 9 cut(s) | 98, 945, 1160, 1972, 1987, 2890, 2926, 3096, 3251 |
| Hpy188I | TCNGA | 9 cut(s) | 386, 1114, 1302, 1402, 1689, 2151, 2835, 3184, 3306 |
| Hpy8I | GTNNAC | 9 cut(s) | 98, 945, 1160, 1972, 1987, 2890, 2926, 3096, 3251 |
| Hpy99I | CGWCG | 2 cut(s) | 2043, 3184 |
| HpyCH4III | ACNGT | 8 cut(s) | 1463, 1786, 1944, 2334, 2389, 2887, 2920, 3338 |
| HpyCH4IV | ACGT | 5 cut(s) | 1066, 2073, 2310, 3179, 3220 |
| HpyF3I | CTNAG | 7 cut(s) | 48, 54, 490, 597, 1113, 1122, 1821 |
| HpySE526I | ACGT | 5 cut(s) | 1066, 2073, 2310, 3179, 3220 |
| Hsp92I | GRCGYC | 1 cut(s) | 2516 |
| HspAI | GCGC | 6 cut(s) | 931, 1255, 1474, 1883, 2784, 2839 |
| Ksp22I | TGATCA | 2 cut(s) | 76, 2646 |
| KspAI | GTTAAC | 1 cut(s) | 1972 |
| LguI | GCTCTTC | 1 cut(s) | 238 |
| LmnI | GCTCC | 6 cut(s) | 538, 616, 664, 1123, 2140, 2794 |
| LweI | GCATC | 8 cut(s) | 309, 848, 1393, 1881, 2017, 2389, 2709, 2755 |
| MabI | ACCWGGT | 2 cut(s) | 160, 2911 |
| MaeI | CTAG | 4 cut(s) | 495, 1085, 2393, 2994 |
| MaeII | ACGT | 5 cut(s) | 1066, 2073, 2310, 3179, 3220 |
| MbiI | CCGCTC | 3 cut(s) | 2123, 2143, 2564 |
| MfeI | CAATTG | 2 cut(s) | 1990, 2499 |
| MflI | RGATCY | 4 cut(s) | 392, 1810, 2272, 2614 |
| MhlI | GDGCHC | 8 cut(s) | 256, 354, 2149, 2993, 3098, 3120, 3157, 3260 |
| MlyI | GAGTC | 2 cut(s) | 1992, 2921 |
| MmeI | TCCRAC | 5 cut(s) | 1304, 1918, 2642, 2969, 3162 |
| MroXI | GAANNNNTTC | 3 cut(s) | 651, 977, 1092 |
| MseI | TTAA | 9 cut(s) | 1041, 1599, 1734, 1836, 1893, 1971, 2300, 2316, 2361 |
| MslI | CAYNNNNRTG | 3 cut(s) | 810, 2871, 3012 |
| MspA1I | CMGCKG | 3 cut(s) | 1612, 2507, 3044 |
| MspI | CCGG | 3 cut(s) | 397, 1343, 1699 |
| MunI | CAATTG | 2 cut(s) | 1990, 2499 |
| MvnI | CGCG | 3 cut(s) | 844, 1257, 3262 |
| NciI | CCSGG | 3 cut(s) | 397, 398, 1699 |
| NcoI | CCATGG | 1 cut(s) | 1659 |
| NdeI | CATATG | 1 cut(s) | 3085 |
| NmuCI | GTSAC | 7 cut(s) | 550, 1227, 1738, 2429, 2461, 2815, 3196 |
| NsbI | TGCGCA | 1 cut(s) | 1475 |
| NspI | RCATGY | 2 cut(s) | 1315, 2784 |
| PaeI | GCATGC | 1 cut(s) | 2784 |
| PaeR7I | CTCGAG | 1 cut(s) | 1932 |
| PagI | TCATGA | 2 cut(s) | 1576, 1900 |
| PaqCI | CACCTGC | 2 cut(s) | 115, 121 |
| PciI | ACATGT | 1 cut(s) | 1311 |
| PciSI | GCTCTTC | 1 cut(s) | 238 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3259 |
| PdmI | GAANNNNTTC | 3 cut(s) | 651, 977, 1092 |
| PfeI | GAWTC | 5 cut(s) | 853, 893, 1260, 1849, 2486 |
| PflFI | GACNNNGTC | 1 cut(s) | 2632 |
| PfoI | TCCNGGA | 2 cut(s) | 1697, 2476 |
| PleI | GAGTC | 2 cut(s) | 1991, 2921 |
| PmaCI | CACGTG | 1 cut(s) | 1067 |
| PmlI | CACGTG | 1 cut(s) | 1067 |
| PpsI | GAGTC | 2 cut(s) | 1991, 2921 |
| Ppu21I | YACGTR | 1 cut(s) | 1067 |
| PpuMI | RGGWCCY | 1 cut(s) | 470 |
| PscI | ACATGT | 1 cut(s) | 1311 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1396 |
| PshBI | ATTAAT | 1 cut(s) | 2361 |
| Psp1406I | AACGTT | 1 cut(s) | 2073 |
| Psp5II | RGGWCCY | 1 cut(s) | 470 |
| PspCI | CACGTG | 1 cut(s) | 1067 |
| PspEI | GGTNACC | 3 cut(s) | 200, 230, 550 |
| PspFI | CCCAGC | 2 cut(s) | 545, 1608 |
| PspOMI | GGGCCC | 2 cut(s) | 252, 350 |
| PspPPI | RGGWCCY | 1 cut(s) | 470 |
| PspXI | VCTCGAGB | 1 cut(s) | 1932 |
| PstI | CTGCAG | 2 cut(s) | 1137, 3286 |
| PstNI | CAGNNNCTG | 1 cut(s) | 572 |
| PsuI | RGATCY | 4 cut(s) | 392, 1810, 2272, 2614 |
| PsyI | GACNNNGTC | 1 cut(s) | 2632 |
| PvuII | CAGCTG | 3 cut(s) | 1612, 2507, 3044 |
| RsaI | GTAC | 5 cut(s) | 1571, 1694, 2106, 2917, 3128 |
| RsaNI | GTAC | 5 cut(s) | 1570, 1693, 2105, 2916, 3127 |
| RseI | CAYNNNNRTG | 3 cut(s) | 810, 2871, 3012 |
| SapI | GCTCTTC | 1 cut(s) | 238 |
| SaqAI | TTAA | 9 cut(s) | 1041, 1599, 1734, 1836, 1893, 1971, 2300, 2316, 2361 |
| SbfI | CCTGCAGG | 1 cut(s) | 1137 |
| ScaI | AGTACT | 2 cut(s) | 1571, 2106 |
| SchI | GAGTC | 2 cut(s) | 1992, 2921 |
| SdaI | CCTGCAGG | 1 cut(s) | 1137 |
| SduI | GDGCHC | 8 cut(s) | 256, 354, 2149, 2993, 3098, 3120, 3157, 3260 |
| SexAI | ACCWGGT | 2 cut(s) | 160, 2911 |
| SfaNI | GCATC | 8 cut(s) | 309, 848, 1393, 1881, 2017, 2389, 2709, 2755 |
| SfcI | CTRYAG | 2 cut(s) | 1133, 3282 |
| Sfr274I | CTCGAG | 1 cut(s) | 1932 |
| SinI | GGWCC | 4 cut(s) | 158, 191, 263, 470 |
| SlaI | CTCGAG | 1 cut(s) | 1932 |
| SmaI | CCCGGG | 1 cut(s) | 398 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 810, 2871, 3012 |
| SmlI | CTYRAG | 4 cut(s) | 558, 697, 1932, 2520 |
| SmoI | CTYRAG | 4 cut(s) | 558, 697, 1932, 2520 |
| SphI | GCATGC | 1 cut(s) | 2784 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1137 |
| SspI | AATATT | 1 cut(s) | 1306 |
| SspMI | CTAG | 4 cut(s) | 495, 1085, 2393, 2994 |
| StyI | CCWWGG | 3 cut(s) | 205, 235, 1659 |
| TaaI | ACNGT | 8 cut(s) | 1463, 1786, 1944, 2334, 2389, 2887, 2920, 3338 |
| TaiI | ACGT | 5 cut(s) | 1069, 2076, 2313, 3182, 3223 |
| TaqI | TCGA | 4 cut(s) | 971, 1536, 1933, 3151 |
| TaqII | GACCGA | 1 cut(s) | 2448 |
| TatI | WGTACW | 2 cut(s) | 1569, 2104 |
| TauI | GCSGC | 2 cut(s) | 306, 1980 |
| TfiI | GAWTC | 5 cut(s) | 853, 893, 1260, 1849, 2486 |
| Tru1I | TTAA | 9 cut(s) | 1041, 1599, 1734, 1836, 1893, 1971, 2300, 2316, 2361 |
| Tru9I | TTAA | 9 cut(s) | 1041, 1599, 1734, 1836, 1893, 1971, 2300, 2316, 2361 |
| TseFI | GTSAC | 7 cut(s) | 550, 1227, 1738, 2429, 2461, 2815, 3196 |
| Tsp45I | GTSAC | 7 cut(s) | 550, 1227, 1738, 2429, 2461, 2815, 3196 |
| TspGWI | ACGGA | 3 cut(s) | 525, 2660, 3100 |
| TspMI | CCCGGG | 1 cut(s) | 396 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2632 |
| VneI | GTGCAC | 1 cut(s) | 3094 |
| VpaK11BI | GGWCC | 4 cut(s) | 158, 191, 263, 470 |
| VspI | ATTAAT | 1 cut(s) | 2361 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 33, 57, 732 |
| XapI | RAATTY | 8 cut(s) | 380, 1037, 1055, 2005, 2415, 2951, 2982, 3035 |
| XbaI | TCTAGA | 1 cut(s) | 1084 |
| XceI | RCATGY | 2 cut(s) | 1315, 2784 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2474 |
| XhoI | CTCGAG | 1 cut(s) | 1932 |
| XmaI | CCCGGG | 1 cut(s) | 396 |
| XmiI | GTMKAC | 2 cut(s) | 944, 2925 |
| XmnI | GAANNNNTTC | 3 cut(s) | 651, 977, 1092 |
| XspI | CTAG | 4 cut(s) | 495, 1085, 2393, 2994 |
| ZrmI | AGTACT | 2 cut(s) | 1571, 2106 |