Rroxscaffold_3G00244030

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001348
Physical Location & Seq
Forward (+)
36446312 .. 36450763
4452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00244030.1

Sequence Viewer

Length: 1233 bp
ATGAGATCTCCGACAACCTCTTTGGGGACCTTTGGCGAGATAGTACGTCATAATGCCTACAATCAAGATCCTTATGCAAAGGAGTTCGGAATTAAAATTAGTCAGACTATGGCTCAGGTTGAAGCTCGTATTCTTCCTGCACCACAGGCGTTCAATGCAGAACCTGTGCTTCCACCAGTCAGTGCTCAACCTAATCAGGTGGAGAAGGTCTTAAAAACTCAGTATCATGATTTGATGACTAAGATTCCGGGCAAGAAGCTTGACTTACTTGTTGTCATCTTGCCAAATAATAATGGCTCTCTTTATGGTGATTTAAAAAGGATTTGTGAGACAGAGCTTGGCCTGGTATCCCAGTGCTGTTTAACTCAACATGTGTTTAAAATGGATAAACAGTATTTAGCAAACATTGTCTTGAAGATAAATGTGAAGGTTGGGGGACGGAACACAGTACTTGTTGATGCAATCTCCAGACGTATTCCCTTGGTTAGCAACCGTCCTACAATAATTTTTGGTGCTGGTATGACGCATCCTCATCCAGGGGAGAATTCAAGCCCATCAATTGCAGCTGTTGTGGCTTCTCAAGACTGGCCTGAAATTACCAAGTATGCTGGTTTGGTTTGTGCTCAAGCCCATCGTCAGCAGCTCATCCAAGATTTGTTTAAACAGTGGCAGGATCCAGTAGAAGGGACAATGTCTGGTGGAATGATAAAGAAAAGTGTCAGTGAGGGGCAGTTCTACCAAGTTCTACTGTACGAACTTGATGCAATTCGTAAGGCATGCGCTTCACTGGAGCCAAATTATCAGCCTCCTGTGACTTTTGTCGTTGTTCAAAAGAGTCATCGTACAAGATTGTTTGCCAACAACCATGGTGATAGCCGTGCAGTTGACCGGAGTGGGAACATATTACCTGGAATTCAGGCAAGAATCATTTCCTGCCCTGTGTTTATGTGTTTTGTAGCAGACGCACTGCAGTCCCTTACCAATAATCTTTGCTATACATATGCAAGGTGTACACGCTCCGTTTCAATTGTGCCTCCTGCTTATTATGCTCATCTCGCCGCAATCCGAGCTCGGTTCTATCTGGAGCCCGTGACTTCAGACAGTGGTTCAATGTCAAGTGGTATGGGTGGTTCTGGTGGAGGATGGAACTCTCGAGCACCGGGTCCAAAAGCTGCTGTGAAGCTTTTGCCTGCGTTGAAGGAGAATGTGAAAAAGGTCATGTTCTACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

410

Amino Acids

44.98

Weight (kDa)

9.3

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoL2 PF16488 14 - 49 2.3e-13 Argonaute linker 2 domain
Piwi PF02171 90 - 305 7.4e-52 Piwi domain
Piwi PF02171 318 - 360 1.6e-10 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1059
AclWI GGATC 3 cut(s) 62, 668, 681
AcsI RAATTY 2 cut(s) 544, 912
AcuI CTGAAG 1 cut(s) 1080
AfaI GTAC 5 cut(s) 45, 450, 752, 844, 1012
AfiI CCNNNNNNNGG 3 cut(s) 24, 536, 683
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 8 cut(s) 122, 154, 415, 549, 830, 1026, 1110, 1198
AjnI CCWGG 3 cut(s) 342, 535, 907
AluBI AGCT 8 cut(s) 125, 259, 337, 566, 643, 1070, 1172, 1183
AluI AGCT 8 cut(s) 125, 259, 337, 566, 643, 1070, 1172, 1183
Alw21I GWGCWC 4 cut(s) 187, 625, 1072, 1159
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 3 cut(s) 62, 668, 681
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 1152
AoxI GGCC 2 cut(s) 340, 587
ApeKI GCWGC 3 cut(s) 563, 640, 1172
ApoI RAATTY 2 cut(s) 544, 912
ArsI GACNNNNNNTTYG 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 928
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 2 cut(s) 27, 1163
AsuC2I CCSGG 2 cut(s) 249, 1161
AsuHPI GGTGA 2 cut(s) 320, 881
AvaI CYCGRG 1 cut(s) 1152
AvaII GGWCC 2 cut(s) 27, 1163
BamHI GGATCC 1 cut(s) 673
BanII GRGCYC 2 cut(s) 1072, 1089
Bbv12I GWGCWC 4 cut(s) 187, 625, 1072, 1159
BbvI GCAGC 3 cut(s) 575, 652, 1159
BccI CCATC 3 cut(s) 562, 639, 1137
BceAI ACGGC 1 cut(s) 861
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 3 cut(s) 344, 537, 909
BciVI GTATCC 1 cut(s) 358
BcnI CCSGG 2 cut(s) 249, 1161
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 1231
BfmI CTRYAG 1 cut(s) 968
BfuI GTATCC 1 cut(s) 358
BglII AGATCT 1 cut(s) 5
BisI GCNGC 4 cut(s) 564, 641, 1059, 1173
BlsI GCNGC 4 cut(s) 565, 642, 1060, 1174
BmcAI AGTACT 1 cut(s) 450
Bme1390I CCNGG 5 cut(s) 249, 344, 537, 909, 1161
Bme18I GGWCC 2 cut(s) 27, 1163
BmeT110I CYCGRG 1 cut(s) 1152
BmgT120I GGNCC 2 cut(s) 27, 1163
BmiI GGNNCC 5 cut(s) 28, 675, 792, 1086, 1164
BmrFI CCNGG 5 cut(s) 249, 344, 537, 909, 1161
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 3 cut(s) 448, 535, 751
BmuI ACTGGG 1 cut(s) 346
BoxI GACNNNNGTC 1 cut(s) 818
BpmI CTGGAG 3 cut(s) 451, 809, 1103
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 564, 609
BpuMI CCSGG 2 cut(s) 249, 1161
BsaJI CCNNGG 3 cut(s) 480, 536, 865
BsaWI WCCGGW 1 cut(s) 888
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 536, 683
Bse1I ACTGG 5 cut(s) 176, 352, 590, 677, 792
BseBI CCWGG 3 cut(s) 344, 537, 909
BseDI CCNNGG 3 cut(s) 480, 536, 865
BseGI GGATG 4 cut(s) 526, 532, 645, 1148
BseLI CCNNNNNNNGG 3 cut(s) 24, 536, 683
BseMII CTCAG 2 cut(s) 128, 233
BseNI ACTGG 5 cut(s) 176, 352, 590, 677, 792
BseXI GCAGC 3 cut(s) 575, 652, 1159
BsgI GTGCAG 2 cut(s) 123, 900
BshFI GGCC 2 cut(s) 342, 589
BsiHKAI GWGCWC 4 cut(s) 187, 625, 1072, 1159
BsiHKCI CYCGRG 1 cut(s) 1152
BsiSI CCGG 3 cut(s) 248, 889, 1160
BslFI GGGAC 4 cut(s) 40, 450, 700, 958
BslI CCNNNNNNNGG 3 cut(s) 24, 536, 683
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 4 cut(s) 40, 450, 700, 958
BsnI GGCC 2 cut(s) 342, 589
BsoBI CYCGRG 1 cut(s) 1152
Bsp1286I GDGCHC 5 cut(s) 187, 625, 1072, 1089, 1159
Bsp1407I TGTACA 1 cut(s) 1010
Bsp143I GATC 3 cut(s) 5, 67, 673
Bsp19I CCATGG 1 cut(s) 865
BspACI CCGC 1 cut(s) 1059
BspANI GGCC 2 cut(s) 342, 589
BspCNI CTCAG 2 cut(s) 127, 232
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 5 cut(s) 28, 675, 792, 1086, 1164
BspMAI CTGCAG 1 cut(s) 972
BspPI GGATC 3 cut(s) 62, 668, 681
BsrGI TGTACA 1 cut(s) 1010
BsrI ACTGG 5 cut(s) 176, 352, 590, 677, 792
BssECI CCNNGG 3 cut(s) 480, 536, 865
BssMI GATC 3 cut(s) 5, 67, 673
BssT1I CCWWGG 2 cut(s) 480, 865
Bst2UI CCWGG 3 cut(s) 344, 537, 909
Bst4CI ACNGT 6 cut(s) 393, 448, 494, 666, 750, 1103
BstAUI TGTACA 1 cut(s) 1010
BstC8I GCNNGC 2 cut(s) 778, 1191
BstDEI CTNAG 3 cut(s) 114, 219, 240
BstDSI CCRYGG 1 cut(s) 865
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 4 cut(s) 526, 532, 645, 1148
BstHHI GCGC 1 cut(s) 782
BstKTI GATC 3 cut(s) 8, 70, 676
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 3 cut(s) 5, 67, 673
BstMWI GCNNNNNNNGC 6 cut(s) 146, 155, 572, 1046, 1055, 1067
BstNI CCWGG 3 cut(s) 344, 537, 909
BstNSI RCATGY 2 cut(s) 374, 780
BstPAI GACNNNNGTC 1 cut(s) 818
BstSCI CCNGG 5 cut(s) 247, 342, 535, 907, 1159
BstSFI CTRYAG 1 cut(s) 968
BstV1I GCAGC 3 cut(s) 575, 652, 1159
BstX2I RGATCY 3 cut(s) 5, 67, 673
BstYI RGATCY 3 cut(s) 5, 67, 673
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 2 cut(s) 342, 589
BtgI CCRYGG 1 cut(s) 865
BtsCI GGATG 4 cut(s) 526, 532, 645, 1148
BtsI GCAGTG 1 cut(s) 965
BtsIMutI CAGTG 7 cut(s) 187, 359, 671, 727, 785, 965, 1108
Cac8I GCNNGC 2 cut(s) 778, 1191
CaiI CAGNNNCTG 1 cut(s) 164
CciI TCATGA 1 cut(s) 226
CfoI GCGC 1 cut(s) 782
Cfr13I GGNCC 2 cut(s) 27, 1163
CseI GACGC 2 cut(s) 532, 971
Csp6I GTAC 5 cut(s) 44, 449, 751, 843, 1011
CviAII CATG 5 cut(s) 227, 371, 777, 866, 1219
CviQI GTAC 5 cut(s) 44, 449, 751, 843, 1011
DdeI CTNAG 3 cut(s) 114, 219, 240
DpnI GATC 3 cut(s) 7, 69, 675
DpnII GATC 3 cut(s) 5, 67, 673
DraI TTTAAA 3 cut(s) 315, 379, 661
Ecl136II GAGCTC 1 cut(s) 1070
Eco130I CCWWGG 2 cut(s) 480, 865
Eco24I GRGCYC 2 cut(s) 1072, 1089
Eco47I GGWCC 2 cut(s) 27, 1163
Eco53kI GAGCTC 1 cut(s) 1070
Eco57I CTGAAG 1 cut(s) 1080
Eco88I CYCGRG 1 cut(s) 1152
EcoICRI GAGCTC 1 cut(s) 1070
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 27
EcoRI GAATTC 2 cut(s) 544, 912
EcoRII CCWGG 3 cut(s) 342, 535, 907
EcoT14I CCWWGG 2 cut(s) 480, 865
EcoT38I GRGCYC 2 cut(s) 1072, 1089
ErhI CCWWGG 2 cut(s) 480, 865
FaeI CATG 5 cut(s) 230, 374, 780, 869, 1222
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 4 cut(s) 40, 450, 700, 958
FatI CATG 5 cut(s) 226, 370, 776, 865, 1218
FauNDI CATATG 1 cut(s) 1000
Fnu4HI GCNGC 4 cut(s) 564, 641, 1059, 1173
FokI GGATG 4 cut(s) 513, 519, 632, 1155
FriOI GRGCYC 2 cut(s) 1072, 1089
Fsp4HI GCNGC 4 cut(s) 564, 641, 1059, 1173
FspBI CTAG 1 cut(s) 1231
GlaI GCGC 1 cut(s) 781
GluI GCNGC 4 cut(s) 564, 641, 1059, 1173
GsuI CTGGAG 3 cut(s) 451, 809, 1103
HaeIII GGCC 2 cut(s) 342, 589
HapII CCGG 3 cut(s) 248, 889, 1160
HgaI GACGC 2 cut(s) 532, 971
HhaI GCGC 1 cut(s) 782
Hin1II CATG 5 cut(s) 230, 374, 780, 869, 1222
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HindIII AAGCTT 2 cut(s) 257, 1181
HinfI GANTC 3 cut(s) 244, 835, 924
HpaII CCGG 3 cut(s) 248, 889, 1160
HphI GGTGA 2 cut(s) 320, 881
Hpy166II GTNNAC 3 cut(s) 886, 1011, 1013
Hpy188I TCNGA 5 cut(s) 12, 89, 105, 1067, 1099
Hpy188III TCNNGA 7 cut(s) 65, 227, 412, 468, 581, 1082, 1152
Hpy8I GTNNAC 3 cut(s) 886, 1011, 1013
HpyAV CCTTC 4 cut(s) 199, 421, 677, 1192
HpyCH4III ACNGT 6 cut(s) 393, 448, 494, 666, 750, 1103
HpyCH4IV ACGT 2 cut(s) 46, 472
HpyCH4V TGCA 9 cut(s) 77, 140, 158, 461, 563, 764, 881, 970, 1004
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 155, 572, 1046, 1055, 1067
HpyF3I CTNAG 3 cut(s) 114, 219, 240
HpySE526I ACGT 2 cut(s) 46, 472
Hsp92II CATG 5 cut(s) 230, 374, 780, 869, 1222
HspAI GCGC 1 cut(s) 780
Kzo9I GATC 3 cut(s) 5, 67, 673
LmnI GCTCC 3 cut(s) 790, 1022, 1084
Lsp1109I GCAGC 3 cut(s) 575, 652, 1159
LweI GCATC 3 cut(s) 448, 535, 751
MaeI CTAG 1 cut(s) 1231
MaeII ACGT 2 cut(s) 46, 472
MaeIII GTNAC 2 cut(s) 811, 1090
MalI GATC 3 cut(s) 7, 69, 675
MboI GATC 3 cut(s) 5, 67, 673
MboII GAAGA 2 cut(s) 125, 427
MfeI CAATTG 2 cut(s) 558, 1026
MflI RGATCY 3 cut(s) 5, 67, 673
MhlI GDGCHC 5 cut(s) 187, 625, 1072, 1089, 1159
MlyI GAGTC 1 cut(s) 844
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 6 cut(s) 28, 540, 718, 816, 1044, 1133
MroXI GAANNNNTTC 1 cut(s) 928
MseI TTAA 6 cut(s) 93, 212, 314, 362, 378, 660
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 3 cut(s) 248, 889, 1160
MspR9I CCNGG 5 cut(s) 249, 344, 537, 909, 1161
MssI GTTTAAAC 1 cut(s) 661
MunI CAATTG 2 cut(s) 558, 1026
MvaI CCWGG 3 cut(s) 344, 537, 909
MwoI GCNNNNNNNGC 6 cut(s) 146, 155, 572, 1046, 1055, 1067
NciI CCSGG 2 cut(s) 249, 1161
NcoI CCATGG 1 cut(s) 865
NdeI CATATG 1 cut(s) 1000
NdeII GATC 3 cut(s) 5, 67, 673
NlaIII CATG 5 cut(s) 230, 374, 780, 869, 1222
NlaIV GGNNCC 5 cut(s) 28, 675, 792, 1086, 1164
NmuCI GTSAC 2 cut(s) 811, 1090
NspI RCATGY 2 cut(s) 374, 780
PaeI GCATGC 1 cut(s) 780
PaeR7I CTCGAG 1 cut(s) 1152
PagI TCATGA 1 cut(s) 226
PciI ACATGT 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 928
PfeI GAWTC 2 cut(s) 244, 924
PflFI GACNNNGTC 1 cut(s) 691
PkrI GCNGC 4 cut(s) 565, 642, 1060, 1174
PleI GAGTC 1 cut(s) 843
PmeI GTTTAAAC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 843
PpuMI RGGWCCY 1 cut(s) 27
PscI ACATGT 1 cut(s) 370
PshAI GACNNNNGTC 1 cut(s) 818
Psp124BI GAGCTC 1 cut(s) 1072
Psp5II RGGWCCY 1 cut(s) 27
Psp6I CCWGG 3 cut(s) 342, 535, 907
PspGI CCWGG 3 cut(s) 342, 535, 907
PspN4I GGNNCC 5 cut(s) 28, 675, 792, 1086, 1164
PspPI GGNCC 2 cut(s) 27, 1163
PspPPI RGGWCCY 1 cut(s) 27
PsrI GAACNNNNNNTAC 2 cut(s) 1114, 1146
PstI CTGCAG 1 cut(s) 972
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 3 cut(s) 5, 67, 673
PsyI GACNNNGTC 1 cut(s) 691
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 5 cut(s) 45, 450, 752, 844, 1012
RsaNI GTAC 5 cut(s) 44, 449, 751, 843, 1011
SacI GAGCTC 1 cut(s) 1072
SaqAI TTAA 6 cut(s) 93, 212, 314, 362, 378, 660
SatI GCNGC 4 cut(s) 564, 641, 1059, 1173
Sau3AI GATC 3 cut(s) 5, 67, 673
Sau96I GGNCC 2 cut(s) 27, 1163
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 1 cut(s) 844
ScrFI CCNGG 5 cut(s) 249, 344, 537, 909, 1161
SduI GDGCHC 5 cut(s) 187, 625, 1072, 1089, 1159
SfaNI GCATC 3 cut(s) 448, 535, 751
SfcI CTRYAG 1 cut(s) 968
Sfr274I CTCGAG 1 cut(s) 1152
SinI GGWCC 2 cut(s) 27, 1163
SlaI CTCGAG 1 cut(s) 1152
SmlI CTYRAG 3 cut(s) 579, 624, 1152
SmoI CTYRAG 3 cut(s) 579, 624, 1152
SphI GCATGC 1 cut(s) 780
SsiI CCGC 1 cut(s) 1059
SspMI CTAG 1 cut(s) 1231
SstI GAGCTC 1 cut(s) 1072
StyD4I CCNGG 5 cut(s) 247, 342, 535, 907, 1159
StyI CCWWGG 2 cut(s) 480, 865
TaaI ACNGT 6 cut(s) 393, 448, 494, 666, 750, 1103
TaiI ACGT 2 cut(s) 49, 475
TaqI TCGA 1 cut(s) 1153
TatI WGTACW 2 cut(s) 448, 1010
TauI GCSGC 1 cut(s) 1061
TfiI GAWTC 2 cut(s) 244, 924
Tru1I TTAA 6 cut(s) 93, 212, 314, 362, 378, 660
Tru9I TTAA 6 cut(s) 93, 212, 314, 362, 378, 660
TscAI CASTG 7 cut(s) 187, 359, 671, 727, 792, 972, 1108
TseFI GTSAC 2 cut(s) 811, 1090
TseI GCWGC 3 cut(s) 563, 640, 1172
Tsp45I GTSAC 2 cut(s) 811, 1090
TspGWI ACGGA 2 cut(s) 454, 1009
TspRI CASTG 7 cut(s) 187, 359, 671, 727, 792, 972, 1108
Tth111I GACNNNGTC 1 cut(s) 691
VpaK11BI GGWCC 2 cut(s) 27, 1163
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 2 cut(s) 544, 912
XceI RCATGY 2 cut(s) 374, 780
XhoI CTCGAG 1 cut(s) 1152
XmnI GAANNNNTTC 1 cut(s) 928
XspI CTAG 1 cut(s) 1231
ZrmI AGTACT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.