Rh7CG311700

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001348
Physical Location & Seq
Reverse (-)
33214481 .. 33215163
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG311700.1

Sequence Viewer

Length: 444 bp
ATGGATAAACAGTATTTAGCAAACATTGTCTTGAAGATAAATGTGAAGGTTGGGGGACGGAACACAGTACTTGTTGATGCAATCTCCAGACGTATTCCCTTGGTTAGCAACCGTCCTACAATAATTTTTGGTGCTGGTATGACGCATCCTCATCCAGGGGAGAATTCAAGCCCATCAATTGCAGCTGTTGTGGCTTCTCAAGACTGGCCTGAAATTACCAAGTATGCTGGTTTGGTTTGTGCTCAAGCCCATCATCAGGAGCTCATCCAAGATTTGTTTAAACAGTGGCAGGATCCGGTAGAAGGGACAATGTCTGGTGGAATGATGAAGGAACTGCTTATTTCACTTTATGGAGCGACAGGGCAGAAGCCTCAACGCATCATTTTCTACAGGCACTTTCTACCTTCTTTGGCATTTTCTCATCCTACGTACTCGTGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

147

Amino Acids

16.27

Weight (kDa)

8.98

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Piwi PF02171 3 - 131 4.5e-28 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 287, 300
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 2 cut(s) 69, 431
AfiI CCNNNNNNNGG 3 cut(s) 155, 256, 302
AgsI TTSAA 2 cut(s) 34, 168
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 2 cut(s) 185, 262
AluI AGCT 2 cut(s) 185, 262
Alw21I GWGCWC 2 cut(s) 244, 264
AlwI GGATC 2 cut(s) 287, 300
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 163
BaeI ACNNNNGTAYC 1 cut(s) 421
BamHI GGATCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 264
BauI CACGAG 1 cut(s) 433
Bbv12I GWGCWC 2 cut(s) 244, 264
BbvI GCAGC 1 cut(s) 194
BccI CCATC 2 cut(s) 181, 258
BciT130I CCWGG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 3 cut(s) 67, 154, 387
BpmI CTGGAG 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 183, 228
BsaAI YACGTR 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 99, 155
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 256, 302
Bse1I ACTGG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 99, 155
BseGI GGATG 4 cut(s) 145, 151, 264, 421
BseLI CCNNNNNNNGG 3 cut(s) 155, 256, 302
BseNI ACTGG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 244, 264
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 2 cut(s) 69, 319
BslI CCNNNNNNNGG 3 cut(s) 155, 256, 302
BsmFI GGGAC 2 cut(s) 69, 319
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 244, 264
Bsp143I GATC 1 cut(s) 292
BspANI GGCC 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 2 cut(s) 287, 300
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 99, 155
BssMI GATC 1 cut(s) 292
BssSI CACGAG 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 433
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 4 cut(s) 12, 67, 113, 285
BstBAI YACGTR 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 4 cut(s) 145, 151, 264, 421
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 388
BstSNI TACGTA 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 4 cut(s) 145, 151, 264, 421
BtsIMutI CAGTG 1 cut(s) 290
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 68, 430
CviJI RGCY 7 cut(s) 171, 185, 194, 208, 248, 262, 370
CviKI_1 RGCY 7 cut(s) 171, 185, 194, 208, 248, 262, 370
CviQI GTAC 2 cut(s) 68, 430
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DraI TTTAAA 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 262
Eco105I TACGTA 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 99
FaiI YATR 3 cut(s) 140, 225, 351
FaqI GGGAC 2 cut(s) 69, 319
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 4 cut(s) 132, 138, 251, 408
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 296
HgaI GACGC 1 cut(s) 151
HpaII CCGG 1 cut(s) 296
Hpy188III TCNNGA 4 cut(s) 31, 87, 200, 257
HpyAV CCTTC 4 cut(s) 40, 296, 322, 414
HpyCH4III ACNGT 4 cut(s) 12, 67, 113, 285
HpyCH4IV ACGT 2 cut(s) 91, 428
HpyCH4V TGCA 2 cut(s) 80, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpySE526I ACGT 2 cut(s) 91, 428
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 2 cut(s) 259, 353
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 3 cut(s) 67, 154, 387
MaeII ACGT 2 cut(s) 91, 428
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 1 cut(s) 46
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 2 cut(s) 244, 264
MluCI AATT 4 cut(s) 123, 163, 177, 213
MnlI CCTC 2 cut(s) 159, 381
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 156
MssI GTTTAAAC 1 cut(s) 280
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 294
PflFI GACNNNGTC 1 cut(s) 310
PkrI GCNGC 1 cut(s) 184
PmeI GTTTAAAC 1 cut(s) 280
Ppu21I YACGTR 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 294
PsuI RGATCY 1 cut(s) 292
PsyI GACNNNGTC 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 69, 431
RsaNI GTAC 2 cut(s) 68, 430
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 2 cut(s) 244, 264
SetI ASST 6 cut(s) 51, 94, 187, 264, 406, 431
SfaNI GCATC 3 cut(s) 67, 154, 387
SfcI CTRYAG 1 cut(s) 388
SmlI CTYRAG 2 cut(s) 198, 243
SmoI CTYRAG 2 cut(s) 198, 243
SnaBI TACGTA 1 cut(s) 429
Sse9I AATT 4 cut(s) 123, 163, 177, 213
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 4 cut(s) 12, 67, 113, 285
TaiI ACGT 2 cut(s) 94, 431
TasI AATT 4 cut(s) 123, 163, 177, 213
TatI WGTACW 1 cut(s) 67
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 290
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 290
Tth111I GACNNNGTC 1 cut(s) 310
XagI CCTNNNNNAGG 1 cut(s) 153
XapI RAATTY 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.