Rmu_co8176236.1_g000001

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8176236.1
OG0001348
Physical Location & Seq
Forward (+)
1 .. 680
680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8176236.1_g000001.1.cds

Sequence Viewer

Length: 588 bp
ggaggcagggggaggggacagggaggaggaagtcgaggtggtggaggttacgtcagcggtaggggtggtggtggtggttacggccgtgggggaggatcttcttccggtggctatggcccgcccaaaacatcaattcctgacctgcaccaagcgacccctgctgctccatatgttgctggggtcaaccctcagcctcaccctacaacaccatctgtgtcttcaccttcaccttcagaactggtggagtcttttcagcaggtttctattgggcaacaagttgctcctcttcctgtgcaggccatccagcctattcccacctcaagtaagtcggttaggttccctcttcgccctggcagaggcaccgtcggcgctaaatgtattgtcaaggccaatcacttctttgctgagttacctgacaaagatctgcaccagtatgatgttactatcacaccggacattgcatcgaggaggttgaatcgggctgtgatcaagcagctggtggatttgtacaggcaatcccagcttggaaataggctccctgcctatgatggacggaagagtctgtacactgctgggccgcttcctttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

196

Amino Acids

20.32

Weight (kDa)

10.16

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 558
Acc36I ACCTGC 2 cut(s) 150, 247
AccB1I GGYRCC 1 cut(s) 359
AciI CCGC 3 cut(s) 57, 119, 578
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 2 cut(s) 509, 566
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 475
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 2 cut(s) 496, 523
AluI AGCT 2 cut(s) 496, 523
AlwI GGATC 1 cut(s) 103
AoxI GGCC 5 cut(s) 82, 115, 297, 387, 575
ApeKI GCWGC 2 cut(s) 161, 493
AspLEI GCGC 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 116, 575
AsuHPI GGTGA 3 cut(s) 188, 213, 219
BanI GGYRCC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 548, 580
BbsI GAAGAC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 148, 505
BccI CCATC 3 cut(s) 217, 308, 542
BceAI ACGGC 2 cut(s) 69, 97
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 372
BfuAI ACCTGC 2 cut(s) 150, 247
BglII AGATCT 1 cut(s) 421
BisI GCNGC 3 cut(s) 162, 494, 578
BlsI GCNGC 3 cut(s) 163, 495, 579
Bme1390I CCNGG 1 cut(s) 351
BmgT120I GGNCC 2 cut(s) 116, 575
BmiI GGNNCC 3 cut(s) 338, 361, 536
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 85, 349
BsaWI WCCGGW 2 cut(s) 104, 451
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 243, 430
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 85, 349
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 203, 396
BseNI ACTGG 2 cut(s) 243, 430
BseRI GAGGAG 3 cut(s) 39, 273, 481
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 148, 505
BseYI CCCAGC 3 cut(s) 176, 519, 572
BsgI GTGCAG 3 cut(s) 128, 314, 410
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 5 cut(s) 84, 117, 299, 389, 577
BshNI GGYRCC 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 85
BsiSI CCGG 2 cut(s) 105, 452
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 5 cut(s) 84, 117, 299, 389, 577
Bsp1407I TGTACA 2 cut(s) 507, 564
Bsp143I GATC 3 cut(s) 95, 421, 486
BspACI CCGC 3 cut(s) 57, 119, 578
BspANI GGCC 5 cut(s) 84, 117, 299, 389, 577
BspCNI CTCAG 2 cut(s) 202, 397
BspLI GGNNCC 3 cut(s) 338, 361, 536
BspMI ACCTGC 2 cut(s) 150, 247
BspPI GGATC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 456
BsrGI TGTACA 2 cut(s) 507, 564
BsrI ACTGG 2 cut(s) 243, 430
BssECI CCNNGG 2 cut(s) 85, 349
BssMI GATC 3 cut(s) 95, 421, 486
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 3 cut(s) 291, 348, 551
BstAUI TGTACA 2 cut(s) 507, 564
BstC8I GCNNGC 2 cut(s) 119, 297
BstDEI CTNAG 2 cut(s) 189, 405
BstDSI CCRYGG 1 cut(s) 85
BstENI CCTNNNNNAGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 3 cut(s) 98, 424, 489
BstMBI GATC 3 cut(s) 95, 421, 486
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 158, 366, 520
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 148, 505
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 95, 421
BstYI RGATCY 2 cut(s) 95, 421
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 5 cut(s) 84, 117, 299, 389, 577
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 2 cut(s) 150, 247
Cac8I GCNNGC 2 cut(s) 119, 297
CfoI GCGC 1 cut(s) 371
Cfr13I GGNCC 2 cut(s) 116, 575
Csp6I GTAC 2 cut(s) 508, 565
CviQI GTAC 2 cut(s) 508, 565
DdeI CTNAG 2 cut(s) 189, 405
DpnI GATC 3 cut(s) 97, 423, 488
DpnII GATC 3 cut(s) 95, 421, 486
DrdI GACNNNNNNGTC 1 cut(s) 558
DseDI GACNNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 82
EagI CGGCCG 1 cut(s) 82
Eam1104I CTCTTC 3 cut(s) 291, 348, 551
EarI CTCTTC 3 cut(s) 291, 348, 551
EclXI CGGCCG 1 cut(s) 82
Eco52I CGGCCG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 349
FaiI YATR 5 cut(s) 114, 169, 171, 435, 546
FaqI GGGAC 1 cut(s) 30
FauI CCCGC 1 cut(s) 126
FauNDI CATATG 1 cut(s) 169
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 3 cut(s) 162, 494, 578
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 3 cut(s) 162, 494, 578
GlaI GCGC 1 cut(s) 370
GluI GCNGC 3 cut(s) 162, 494, 578
GsaI CCCAGC 3 cut(s) 180, 523, 576
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 5 cut(s) 84, 117, 299, 389, 577
HapII CCGG 2 cut(s) 105, 452
HhaI GCGC 1 cut(s) 371
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 3 cut(s) 245, 475, 559
HpaII CCGG 2 cut(s) 105, 452
HphI GGTGA 3 cut(s) 188, 213, 219
Hpy166II GTNNAC 2 cut(s) 184, 567
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 2 cut(s) 184, 567
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 234, 240
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 145, 295, 427, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 366, 520
HpyF3I CTNAG 2 cut(s) 189, 405
HpySE526I ACGT 1 cut(s) 51
HspAI GCGC 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 3 cut(s) 95, 421, 486
LmnI GCTCC 3 cut(s) 169, 286, 540
Lsp1109I GCAGC 2 cut(s) 148, 505
LweI GCATC 1 cut(s) 470
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 4 cut(s) 47, 77, 408, 439
MalI GATC 3 cut(s) 97, 423, 488
MboI GATC 3 cut(s) 95, 421, 486
MboII GAAGA 6 cut(s) 90, 93, 210, 278, 335, 568
MflI RGATCY 2 cut(s) 95, 421
MluCI AATT 1 cut(s) 132
MlyI GAGTC 2 cut(s) 254, 568
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 2 cut(s) 57, 496
MspI CCGG 2 cut(s) 105, 452
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 158, 366, 520
NdeI CATATG 1 cut(s) 169
NdeII GATC 3 cut(s) 95, 421, 486
NlaIV GGNNCC 3 cut(s) 338, 361, 536
PfeI GAWTC 1 cut(s) 475
PkrI GCNGC 3 cut(s) 163, 495, 579
PleI GAGTC 2 cut(s) 253, 567
PpsI GAGTC 2 cut(s) 253, 567
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 3 cut(s) 176, 519, 572
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 3 cut(s) 338, 361, 536
PspPI GGNCC 2 cut(s) 116, 575
PsuI RGATCY 2 cut(s) 95, 421
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 2 cut(s) 509, 566
RsaNI GTAC 2 cut(s) 508, 565
RseI CAYNNNNRTG 1 cut(s) 432
SatI GCNGC 3 cut(s) 162, 494, 578
Sau3AI GATC 3 cut(s) 95, 421, 486
Sau96I GGNCC 2 cut(s) 116, 575
SchI GAGTC 2 cut(s) 254, 568
ScrFI CCNGG 1 cut(s) 351
SfaNI GCATC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 1 cut(s) 132
SsiI CCGC 3 cut(s) 57, 119, 578
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 34, 464
TasI AATT 1 cut(s) 132
TatI WGTACW 2 cut(s) 507, 564
TauI GCSGC 1 cut(s) 580
TfiI GAWTC 1 cut(s) 475
TscAI CASTG 1 cut(s) 574
TseI GCWGC 2 cut(s) 161, 493
TspGWI ACGGA 1 cut(s) 568
TspRI CASTG 1 cut(s) 574
XagI CCTNNNNNAGG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.