Rmu_co8292499.1_g000001

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8292499.1
OG0001348
Physical Location & Seq
Forward (+)
1 .. 867
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8292499.1_g000001.1.cds

Sequence Viewer

Length: 542 bp
ggaagagtctgtacactgctgggccgcttcctttctcatccaaggaattcaagatcgtgcttgttgatgatgatgatggatcaggcgggcaaaggaaggagaaggagagagaatttaaagtcgtggtcaagtttgctgcacgtgctgacctacaccatctagaactctttttgatggggaggcaagctgaggctcctcaggaagcccttcaggttctcgacattgttctgcgtgaattgcctacagctagttactttcctgtggcacgttcattttattcccctgatctggggagaaggcagtcgctaggtgagggtttggaaagttggcgtggattctatcagagtattcgtccaacgcagatggggctgtctctaaatattgatatgtcatctactgctttcatcgagccactgccaatcattgaatttgtcaatcagctactcaatcgagacatttcatttagacaattgtcagatgctgatcgtgtgaaggttagattctgttcatggtcttctttgtttctgatgacttgtgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

179

Amino Acids

20.37

Weight (kDa)

6.19

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 86
AclWI GGATC 1 cut(s) 87
AcsI RAATTY 3 cut(s) 46, 112, 427
AcuI CTGAAG 1 cut(s) 193
AcvI CACGTG 1 cut(s) 142
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 288, 289
AgsI TTSAA 2 cut(s) 51, 427
AluBI AGCT 3 cut(s) 187, 247, 441
AluI AGCT 3 cut(s) 187, 247, 441
Alw26I GTCTC 2 cut(s) 377, 446
AlwI GGATC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 481
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 3 cut(s) 46, 112, 427
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 322
AxyI CCTNAGG 1 cut(s) 197
BarI GAAGNNNNNNTAC 1 cut(s) 27
BbrPI CACGTG 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 506
BbvCI CCTCAGC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 123
BccI CCATC 4 cut(s) 70, 164, 168, 357
BcoDI GTCTC 2 cut(s) 377, 446
BfaI CTAG 3 cut(s) 160, 248, 307
BfmI CTRYAG 1 cut(s) 242
BisI GCNGC 2 cut(s) 25, 137
BlsI GCNGC 2 cut(s) 26, 138
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 194
BmsI GCATC 1 cut(s) 468
BoxI GACNNNNGTC 2 cut(s) 471, 535
BpiI GAAGAC 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 41
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 289
Bse21I CCTNAGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 482
BseLI CCNNNNNNNGG 2 cut(s) 288, 289
BseMII CTCAG 2 cut(s) 179, 211
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 288, 289
BsmAI GTCTC 2 cut(s) 377, 446
BsnI GGCC 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 11
Bsp143I GATC 4 cut(s) 53, 79, 285, 483
BspACI CCGC 2 cut(s) 25, 86
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 180, 210
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 4 cut(s) 53, 79, 285, 483
BssT1I CCWWGG 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 88, 185
BstDEI CTNAG 2 cut(s) 188, 197
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 4 cut(s) 56, 82, 288, 486
BstMAI GTCTC 2 cut(s) 377, 446
BstMBI GATC 4 cut(s) 53, 79, 285, 483
BstMWI GCNNNNNNNGC 3 cut(s) 142, 237, 366
BstPAI GACNNNNGTC 2 cut(s) 471, 535
BstSFI CTRYAG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 506
Bsu36I CCTNAGG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 2 cut(s) 14, 412
BtsIMutI CAGTG 2 cut(s) 14, 412
Cac8I GCNNGC 2 cut(s) 88, 185
CaiI CAGNNNCTG 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 509
CviJI RGCY 8 cut(s) 24, 187, 193, 205, 247, 369, 411, 441
CviKI_1 RGCY 8 cut(s) 24, 187, 193, 205, 247, 369, 411, 441
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 188, 197
DpnI GATC 4 cut(s) 55, 81, 287, 485
DpnII GATC 4 cut(s) 53, 79, 285, 483
DraI TTTAAA 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 193
Eco72I CACGTG 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 512
FaiI YATR 2 cut(s) 388, 510
FatI CATG 1 cut(s) 508
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 25, 137
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 25, 137
FspBI CTAG 3 cut(s) 160, 248, 307
GluI GCNGC 2 cut(s) 25, 137
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 24
Hin1II CATG 1 cut(s) 512
HinfI GANTC 3 cut(s) 6, 335, 500
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 3 cut(s) 344, 477, 527
Hpy188III TCNNGA 5 cut(s) 51, 160, 199, 217, 451
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 5 cut(s) 90, 96, 217, 290, 486
HpyCH4IV ACGT 2 cut(s) 141, 267
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 237, 366
HpyF3I CTNAG 2 cut(s) 188, 197
HpySE526I ACGT 2 cut(s) 141, 267
Hsp92II CATG 1 cut(s) 512
Kzo9I GATC 4 cut(s) 53, 79, 285, 483
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 7 cut(s) 5, 68, 184, 196, 272, 274, 296
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 468
MaeI CTAG 3 cut(s) 160, 248, 307
MaeII ACGT 2 cut(s) 141, 267
MaeIII GTNAC 1 cut(s) 250
MalI GATC 4 cut(s) 55, 81, 287, 485
MboI GATC 4 cut(s) 53, 79, 285, 483
MboII GAAGA 2 cut(s) 15, 506
MfeI CAATTG 1 cut(s) 469
MluCI AATT 5 cut(s) 46, 112, 235, 427, 469
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 4 cut(s) 173, 183, 206, 306
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 1 cut(s) 116
MunI CAATTG 1 cut(s) 469
MwoI GCNNNNNNNGC 3 cut(s) 142, 237, 366
NdeII GATC 4 cut(s) 53, 79, 285, 483
NlaIII CATG 1 cut(s) 512
NlaIV GGNNCC 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 335, 500
PkrI GCNGC 2 cut(s) 26, 138
PleI GAGTC 1 cut(s) 14
PmaCI CACGTG 1 cut(s) 142
PmlI CACGTG 1 cut(s) 142
PpsI GAGTC 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 142
PshAI GACNNNNGTC 2 cut(s) 471, 535
PspCI CACGTG 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 481
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 2 cut(s) 25, 137
Sau3AI GATC 4 cut(s) 53, 79, 285, 483
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 1 cut(s) 15
SetI ASST 9 cut(s) 144, 152, 189, 215, 249, 270, 312, 443, 497
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 242
Sse9I AATT 5 cut(s) 46, 112, 235, 427, 469
SsiI CCGC 2 cut(s) 25, 86
SspI AATATT 1 cut(s) 381
SspMI CTAG 3 cut(s) 160, 248, 307
StyI CCWWGG 1 cut(s) 41
TaiI ACGT 2 cut(s) 144, 270
TaqI TCGA 3 cut(s) 218, 407, 450
TasI AATT 5 cut(s) 46, 112, 235, 427, 469
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 335, 500
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 21, 419
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 4 cut(s) 260, 393, 449, 497
TspRI CASTG 2 cut(s) 21, 419
XapI RAATTY 3 cut(s) 46, 112, 427
XbaI TCTAGA 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 3 cut(s) 160, 248, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.