Belongs to the argonaute family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Gly-rich_Ago1 | PF12764 | 137 - 243 | 1.8e-08 | Glycine-rich region of argonaut |
| ArgoN | PF16486 | 262 - 396 | 9.7e-36 | N-terminal domain of argonaute |
| ArgoL1 | PF08699 | 407 - 456 | 8.6e-21 | Argonaute linker 1 domain |
| PAZ | PF02170 | 462 - 588 | 1.2e-30 | PAZ domain |
| ArgoL2 | PF16488 | 598 - 644 | 1.2e-16 | Argonaute linker 2 domain |
| ArgoMid | PF16487 | 655 - 730 | 1.1e-09 | Mid domain of argonaute |
| Piwi | PF02171 | 747 - 1067 | 2.5e-115 | Piwi domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 115 |
| Acc16I | TGCGCA | 1 cut(s) | 1508 |
| Acc36I | ACCTGC | 5 cut(s) | 115, 555, 958, 1116, 1159 |
| AccB1I | GGYRCC | 2 cut(s) | 770, 3148 |
| AccBSI | CCGCTC | 3 cut(s) | 2156, 2176, 2597 |
| AccI | GTMKAC | 2 cut(s) | 977, 2958 |
| AccII | CGCG | 4 cut(s) | 492, 877, 1225, 3295 |
| AclWI | GGATC | 6 cut(s) | 420, 1051, 1838, 2642, 2655, 3283 |
| AcoI | YGGCCR | 3 cut(s) | 337, 343, 487 |
| AcsI | RAATTY | 8 cut(s) | 413, 1070, 1088, 2038, 2448, 2984, 3015, 3068 |
| AcuI | CTGAAG | 4 cut(s) | 621, 997, 2201, 3359 |
| AcvI | CACGTG | 1 cut(s) | 1100 |
| AcyI | GRCGYC | 1 cut(s) | 2549 |
| AdeI | CACNNNGTG | 1 cut(s) | 1268 |
| AfaI | GTAC | 6 cut(s) | 1604, 1727, 2139, 2950, 3161, 3292 |
| AflIII | ACRYGT | 2 cut(s) | 1344, 2341 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1821 |
| AjiI | CACGTC | 2 cut(s) | 2344, 3254 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 918, 950, 1874, 1906 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1545, 1577 |
| AluBI | AGCT | 8 cut(s) | 527, 1399, 1645, 1901, 2236, 2540, 3038, 3077 |
| AluI | AGCT | 8 cut(s) | 527, 1399, 1645, 1901, 2236, 2540, 3038, 3077 |
| Alw21I | GWGCWC | 1 cut(s) | 3131 |
| Alw26I | GTCTC | 4 cut(s) | 1404, 1741, 2294, 2556 |
| Alw44I | GTGCAC | 1 cut(s) | 3127 |
| AlwI | GGATC | 6 cut(s) | 420, 1051, 1838, 2642, 2655, 3283 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 605 |
| Ama87I | CYCGRG | 3 cut(s) | 429, 730, 1965 |
| ApaI | GGGCCC | 2 cut(s) | 289, 387 |
| ApaLI | GTGCAC | 1 cut(s) | 3127 |
| ApoI | RAATTY | 8 cut(s) | 413, 1070, 1088, 2038, 2448, 2984, 3015, 3068 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1294, 1326 |
| AseI | ATTAAT | 1 cut(s) | 2394 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 684, 1010, 1125 |
| AspLEI | GCGC | 6 cut(s) | 966, 1225, 1509, 1918, 2819, 2874 |
| AsuC2I | CCSGG | 4 cut(s) | 430, 431, 1732, 2946 |
| AsuHPI | GGTGA | 7 cut(s) | 16, 50, 90, 577, 1280, 2291, 2488 |
| AvaI | CYCGRG | 3 cut(s) | 429, 730, 1965 |
| AvaII | GGWCC | 6 cut(s) | 158, 191, 224, 254, 296, 503 |
| AxyI | CCTNAGG | 2 cut(s) | 54, 1155 |
| BaeGI | GKGCMC | 5 cut(s) | 289, 387, 3026, 3131, 3153 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2940, 2973 |
| BamHI | GGATCC | 1 cut(s) | 2647 |
| BanI | GGYRCC | 2 cut(s) | 770, 3148 |
| BanII | GRGCYC | 4 cut(s) | 289, 387, 2182, 3190 |
| BbrPI | CACGTG | 1 cut(s) | 1100 |
| Bbv12I | GWGCWC | 1 cut(s) | 3131 |
| BbvCI | CCTCAGC | 1 cut(s) | 630 |
| BceAI | ACGGC | 3 cut(s) | 324, 330, 3015 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1802, 1836 |
| BclI | TGATCA | 2 cut(s) | 76, 2679 |
| BcnI | CCSGG | 4 cut(s) | 430, 431, 1732, 2946 |
| BcoDI | GTCTC | 4 cut(s) | 1404, 1741, 2294, 2556 |
| BfaI | CTAG | 5 cut(s) | 528, 1118, 1422, 2426, 3027 |
| BfmI | CTRYAG | 2 cut(s) | 1166, 3315 |
| BfoI | RGCGCY | 1 cut(s) | 2875 |
| BfuAI | ACCTGC | 5 cut(s) | 115, 555, 958, 1116, 1159 |
| BglII | AGATCT | 1 cut(s) | 2305 |
| BlpI | GCTNAGC | 1 cut(s) | 523 |
| BmcAI | AGTACT | 2 cut(s) | 1604, 2139 |
| Bme18I | GGWCC | 6 cut(s) | 158, 191, 224, 254, 296, 503 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1821 |
| BmeT110I | CYCGRG | 3 cut(s) | 429, 730, 1965 |
| BmgBI | CACGTC | 2 cut(s) | 2344, 3254 |
| BmrI | ACTGGG | 2 cut(s) | 2317, 2724 |
| BmsI | GCATC | 8 cut(s) | 342, 881, 1426, 1914, 2050, 2422, 2742, 2788 |
| BmuI | ACTGGG | 2 cut(s) | 2317, 2724 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1429 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 736, 768 |
| BpmI | CTGGAG | 3 cut(s) | 279, 2532, 2829 |
| Bpu10I | CCTNAGC | 2 cut(s) | 630, 1854 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 523 |
| BpuEI | CTTGAG | 2 cut(s) | 576, 2538 |
| BpuMI | CCSGG | 4 cut(s) | 430, 431, 1732, 2946 |
| BsaAI | YACGTR | 1 cut(s) | 1100 |
| BsaBI | GATNNNNATC | 4 cut(s) | 668, 1440, 1871, 2124 |
| BsaHI | GRCGYC | 1 cut(s) | 2549 |
| BsaWI | WCCGGW | 1 cut(s) | 1375 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 550, 580 |
| Bse1I | ACTGG | 9 cut(s) | 469, 781, 841, 1206, 2135, 2323, 2564, 2719, 2846 |
| Bse21I | CCTNAGG | 2 cut(s) | 54, 1155 |
| Bse8I | GATNNNNATC | 4 cut(s) | 668, 1440, 1871, 2124 |
| BseJI | GATNNNNATC | 4 cut(s) | 668, 1440, 1871, 2124 |
| BseMII | CTCAG | 7 cut(s) | 62, 68, 537, 644, 1137, 1169, 1868 |
| BseNI | ACTGG | 9 cut(s) | 469, 781, 841, 1206, 2135, 2323, 2564, 2719, 2846 |
| BseSI | GKGCMC | 5 cut(s) | 289, 387, 3026, 3131, 3153 |
| BseX3I | CGGCCG | 1 cut(s) | 337 |
| BseYI | CCCAGC | 2 cut(s) | 578, 1641 |
| BsgI | GTGCAG | 5 cut(s) | 93, 533, 591, 1080, 1094 |
| Bsh1236I | CGCG | 4 cut(s) | 492, 877, 1225, 3295 |
| Bsh1285I | CGRYCG | 1 cut(s) | 340 |
| BshNI | GGYRCC | 2 cut(s) | 770, 3148 |
| BsiEI | CGRYCG | 1 cut(s) | 340 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3131 |
| BsiHKCI | CYCGRG | 3 cut(s) | 429, 730, 1965 |
| BsiSI | CCGG | 5 cut(s) | 430, 725, 1376, 1732, 2946 |
| BslFI | GGGAC | 2 cut(s) | 321, 2674 |
| BsmAI | GTCTC | 4 cut(s) | 1404, 1741, 2294, 2556 |
| BsmBI | CGTCTC | 1 cut(s) | 2556 |
| BsmFI | GGGAC | 2 cut(s) | 321, 2674 |
| BsoBI | CYCGRG | 3 cut(s) | 429, 730, 1965 |
| Bsp120I | GGGCCC | 2 cut(s) | 285, 383 |
| Bsp1286I | GDGCHC | 7 cut(s) | 289, 387, 2182, 3026, 3131, 3153, 3190 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 523 |
| Bsp19I | CCATGG | 1 cut(s) | 1692 |
| BspCNI | CTCAG | 7 cut(s) | 61, 67, 536, 643, 1138, 1168, 1867 |
| BspFNI | CGCG | 4 cut(s) | 492, 877, 1225, 3295 |
| BspHI | TCATGA | 2 cut(s) | 1609, 1933 |
| BspMAI | CTGCAG | 2 cut(s) | 1170, 3319 |
| BspMI | ACCTGC | 5 cut(s) | 115, 555, 958, 1116, 1159 |
| BspPI | GGATC | 6 cut(s) | 420, 1051, 1838, 2642, 2655, 3283 |
| BspQI | GCTCTTC | 1 cut(s) | 271 |
| BspT107I | GGYRCC | 2 cut(s) | 770, 3148 |
| BsrBI | CCGCTC | 3 cut(s) | 2156, 2176, 2597 |
| BsrI | ACTGG | 9 cut(s) | 469, 781, 841, 1206, 2135, 2323, 2564, 2719, 2846 |
| BssNAI | GTATAC | 1 cut(s) | 978 |
| BssNI | GRCGYC | 1 cut(s) | 2549 |
| BssT1I | CCWWGG | 5 cut(s) | 172, 205, 238, 268, 1692 |
| Bst1107I | GTATAC | 1 cut(s) | 978 |
| Bst4CI | ACNGT | 8 cut(s) | 1496, 1819, 1977, 2367, 2422, 2920, 2953, 3371 |
| Bst6I | CTCTTC | 5 cut(s) | 8, 142, 271, 759, 3347 |
| BstACI | GRCGYC | 1 cut(s) | 2549 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3305, 3314 |
| BstBAI | YACGTR | 1 cut(s) | 1100 |
| BstC8I | GCNNGC | 9 cut(s) | 985, 1052, 1542, 1903, 1961, 2178, 2815, 3297, 3333 |
| BstDEI | CTNAG | 7 cut(s) | 48, 54, 523, 630, 1146, 1155, 1854 |
| BstDSI | CCRYGG | 6 cut(s) | 340, 346, 490, 1495, 1692, 3144 |
| BstEII | GGTNACC | 5 cut(s) | 167, 200, 233, 263, 583 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 33, 57, 765 |
| BstFNI | CGCG | 4 cut(s) | 492, 877, 1225, 3295 |
| BstH2I | RGCGCY | 1 cut(s) | 2875 |
| BstHHI | GCGC | 6 cut(s) | 966, 1225, 1509, 1918, 2819, 2874 |
| BstMAI | GTCTC | 4 cut(s) | 1404, 1741, 2294, 2556 |
| BstMCI | CGRYCG | 1 cut(s) | 340 |
| BstNSI | RCATGY | 2 cut(s) | 1348, 2817 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1429 |
| BstPI | GGTNACC | 5 cut(s) | 167, 200, 233, 263, 583 |
| BstSFI | CTRYAG | 2 cut(s) | 1166, 3315 |
| BstSLI | GKGCMC | 5 cut(s) | 289, 387, 3026, 3131, 3153 |
| BstUI | CGCG | 4 cut(s) | 492, 877, 1225, 3295 |
| BstX2I | RGATCY | 4 cut(s) | 425, 1843, 2305, 2647 |
| BstYI | RGATCY | 4 cut(s) | 425, 1843, 2305, 2647 |
| BstZ17I | GTATAC | 1 cut(s) | 978 |
| BstZI | CGGCCG | 1 cut(s) | 337 |
| Bsu36I | CCTNAGG | 2 cut(s) | 54, 1155 |
| BtgI | CCRYGG | 6 cut(s) | 340, 346, 490, 1495, 1692, 3144 |
| BtgZI | GCGATG | 2 cut(s) | 858, 1521 |
| BtrI | CACGTC | 2 cut(s) | 2344, 3254 |
| BtsI | GCAGTG | 2 cut(s) | 70, 3324 |
| BveI | ACCTGC | 5 cut(s) | 115, 555, 958, 1116, 1159 |
| Cac8I | GCNNGC | 9 cut(s) | 985, 1052, 1542, 1903, 1961, 2178, 2815, 3297, 3333 |
| CaiI | CAGNNNCTG | 1 cut(s) | 605 |
| CciI | TCATGA | 2 cut(s) | 1609, 1933 |
| CfoI | GCGC | 6 cut(s) | 966, 1225, 1509, 1918, 2819, 2874 |
| Cfr42I | CCGCGG | 1 cut(s) | 493 |
| Cfr9I | CCCGGG | 1 cut(s) | 429 |
| CseI | GACGC | 2 cut(s) | 1772, 2538 |
| Csp6I | GTAC | 6 cut(s) | 1603, 1726, 2138, 2949, 3160, 3291 |
| CviQI | GTAC | 6 cut(s) | 1603, 1726, 2138, 2949, 3160, 3291 |
| DdeI | CTNAG | 7 cut(s) | 48, 54, 523, 630, 1146, 1155, 1854 |
| DraI | TTTAAA | 1 cut(s) | 1075 |
| DraIII | CACNNNGTG | 1 cut(s) | 1268 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1821 |
| EaeI | YGGCCR | 3 cut(s) | 337, 343, 487 |
| EagI | CGGCCG | 1 cut(s) | 337 |
| Eam1104I | CTCTTC | 5 cut(s) | 8, 142, 271, 759, 3347 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1821 |
| EarI | CTCTTC | 5 cut(s) | 8, 142, 271, 759, 3347 |
| EciI | GGCGGA | 1 cut(s) | 3285 |
| EclXI | CGGCCG | 1 cut(s) | 337 |
| Eco130I | CCWWGG | 5 cut(s) | 172, 205, 238, 268, 1692 |
| Eco24I | GRGCYC | 4 cut(s) | 289, 387, 2182, 3190 |
| Eco47I | GGWCC | 6 cut(s) | 158, 191, 224, 254, 296, 503 |
| Eco52I | CGGCCG | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 4 cut(s) | 621, 997, 2201, 3359 |
| Eco72I | CACGTG | 1 cut(s) | 1100 |
| Eco81I | CCTNAGG | 2 cut(s) | 54, 1155 |
| Eco88I | CYCGRG | 3 cut(s) | 429, 730, 1965 |
| Eco91I | GGTNACC | 5 cut(s) | 167, 200, 233, 263, 583 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 33, 57, 765 |
| EcoO109I | RGGNCCY | 6 cut(s) | 254, 384, 406, 503, 602, 3324 |
| EcoO65I | GGTNACC | 5 cut(s) | 167, 200, 233, 263, 583 |
| EcoRI | GAATTC | 3 cut(s) | 413, 2448, 3015 |
| EcoT14I | CCWWGG | 5 cut(s) | 172, 205, 238, 268, 1692 |
| EcoT38I | GRGCYC | 4 cut(s) | 289, 387, 2182, 3190 |
| ErhI | CCWWGG | 5 cut(s) | 172, 205, 238, 268, 1692 |
| Esp3I | CGTCTC | 1 cut(s) | 2556 |
| FaqI | GGGAC | 2 cut(s) | 321, 2674 |
| FauI | CCCGC | 5 cut(s) | 109, 121, 485, 1043, 2169 |
| FauNDI | CATATG | 1 cut(s) | 3118 |
| FbaI | TGATCA | 2 cut(s) | 76, 2679 |
| FblI | GTMKAC | 2 cut(s) | 977, 2958 |
| FriOI | GRGCYC | 4 cut(s) | 289, 387, 2182, 3190 |
| FspBI | CTAG | 5 cut(s) | 528, 1118, 1422, 2426, 3027 |
| FspI | TGCGCA | 1 cut(s) | 1508 |
| GlaI | GCGC | 6 cut(s) | 965, 1224, 1508, 1917, 2818, 2873 |
| GsaI | CCCAGC | 2 cut(s) | 582, 1645 |
| GsuI | CTGGAG | 3 cut(s) | 279, 2532, 2829 |
| HaeII | RGCGCY | 1 cut(s) | 2875 |
| HapII | CCGG | 5 cut(s) | 430, 725, 1376, 1732, 2946 |
| HgaI | GACGC | 2 cut(s) | 1772, 2538 |
| HhaI | GCGC | 6 cut(s) | 966, 1225, 1509, 1918, 2819, 2874 |
| Hin1I | GRCGYC | 1 cut(s) | 2549 |
| Hin6I | GCGC | 6 cut(s) | 964, 1223, 1507, 1916, 2817, 2872 |
| HinP1I | GCGC | 6 cut(s) | 964, 1223, 1507, 1916, 2817, 2872 |
| HincII | GTYRAC | 2 cut(s) | 2020, 2923 |
| HindII | GTYRAC | 2 cut(s) | 2020, 2923 |
| HinfI | GANTC | 7 cut(s) | 886, 926, 1293, 1882, 2016, 2519, 2960 |
| HpaII | CCGG | 5 cut(s) | 430, 725, 1376, 1732, 2946 |
| HphI | GGTGA | 7 cut(s) | 16, 50, 90, 577, 1280, 2291, 2488 |
| Hpy166II | GTNNAC | 8 cut(s) | 98, 978, 1193, 2020, 2923, 2959, 3129, 3284 |
| Hpy8I | GTNNAC | 8 cut(s) | 98, 978, 1193, 2020, 2923, 2959, 3129, 3284 |
| Hpy99I | CGWCG | 2 cut(s) | 2076, 3217 |
| HpyCH4III | ACNGT | 8 cut(s) | 1496, 1819, 1977, 2367, 2422, 2920, 2953, 3371 |
| HpyCH4IV | ACGT | 5 cut(s) | 849, 1099, 2343, 3212, 3253 |
| HpyF3I | CTNAG | 7 cut(s) | 48, 54, 523, 630, 1146, 1155, 1854 |
| HpySE526I | ACGT | 5 cut(s) | 849, 1099, 2343, 3212, 3253 |
| Hsp92I | GRCGYC | 1 cut(s) | 2549 |
| HspAI | GCGC | 6 cut(s) | 964, 1223, 1507, 1916, 2817, 2872 |
| Ksp22I | TGATCA | 2 cut(s) | 76, 2679 |
| KspI | CCGCGG | 1 cut(s) | 493 |
| LguI | GCTCTTC | 1 cut(s) | 271 |
| LmnI | GCTCC | 5 cut(s) | 571, 697, 1156, 2173, 2827 |
| LweI | GCATC | 8 cut(s) | 342, 881, 1426, 1914, 2050, 2422, 2742, 2788 |
| MaeI | CTAG | 5 cut(s) | 528, 1118, 1422, 2426, 3027 |
| MaeII | ACGT | 5 cut(s) | 849, 1099, 2343, 3212, 3253 |
| MbiI | CCGCTC | 3 cut(s) | 2156, 2176, 2597 |
| MfeI | CAATTG | 2 cut(s) | 2023, 2532 |
| MflI | RGATCY | 4 cut(s) | 425, 1843, 2305, 2647 |
| MhlI | GDGCHC | 7 cut(s) | 289, 387, 2182, 3026, 3131, 3153, 3190 |
| MlyI | GAGTC | 2 cut(s) | 2025, 2954 |
| MmeI | TCCRAC | 5 cut(s) | 1337, 1951, 2675, 3002, 3195 |
| MroXI | GAANNNNTTC | 3 cut(s) | 684, 1010, 1125 |
| MseI | TTAA | 9 cut(s) | 1074, 1632, 1767, 1869, 1926, 2004, 2333, 2349, 2394 |
| MslI | CAYNNNNRTG | 3 cut(s) | 843, 2904, 3045 |
| MspA1I | CMGCKG | 4 cut(s) | 492, 1645, 2540, 3077 |
| MspI | CCGG | 5 cut(s) | 430, 725, 1376, 1732, 2946 |
| MunI | CAATTG | 2 cut(s) | 2023, 2532 |
| MvnI | CGCG | 4 cut(s) | 492, 877, 1225, 3295 |
| NciI | CCSGG | 4 cut(s) | 430, 431, 1732, 2946 |
| NcoI | CCATGG | 1 cut(s) | 1692 |
| NdeI | CATATG | 1 cut(s) | 3118 |
| NmuCI | GTSAC | 7 cut(s) | 583, 1260, 1771, 2462, 2494, 2848, 3229 |
| NsbI | TGCGCA | 1 cut(s) | 1508 |
| NspI | RCATGY | 2 cut(s) | 1348, 2817 |
| PaeI | GCATGC | 1 cut(s) | 2817 |
| PaeR7I | CTCGAG | 2 cut(s) | 730, 1965 |
| PagI | TCATGA | 2 cut(s) | 1609, 1933 |
| PaqCI | CACCTGC | 1 cut(s) | 115 |
| PciI | ACATGT | 1 cut(s) | 1344 |
| PciSI | GCTCTTC | 1 cut(s) | 271 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3292 |
| PdmI | GAANNNNTTC | 3 cut(s) | 684, 1010, 1125 |
| PfeI | GAWTC | 5 cut(s) | 886, 926, 1293, 1882, 2519 |
| PflFI | GACNNNGTC | 1 cut(s) | 2665 |
| PfoI | TCCNGGA | 2 cut(s) | 1730, 2509 |
| PleI | GAGTC | 2 cut(s) | 2024, 2954 |
| PmaCI | CACGTG | 1 cut(s) | 1100 |
| PmlI | CACGTG | 1 cut(s) | 1100 |
| PpsI | GAGTC | 2 cut(s) | 2024, 2954 |
| Ppu21I | YACGTR | 1 cut(s) | 1100 |
| PpuMI | RGGWCCY | 2 cut(s) | 254, 503 |
| PscI | ACATGT | 1 cut(s) | 1344 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1429 |
| PshBI | ATTAAT | 1 cut(s) | 2394 |
| Psp5II | RGGWCCY | 2 cut(s) | 254, 503 |
| PspCI | CACGTG | 1 cut(s) | 1100 |
| PspEI | GGTNACC | 5 cut(s) | 167, 200, 233, 263, 583 |
| PspFI | CCCAGC | 2 cut(s) | 578, 1641 |
| PspOMI | GGGCCC | 2 cut(s) | 285, 383 |
| PspPPI | RGGWCCY | 2 cut(s) | 254, 503 |
| PspXI | VCTCGAGB | 2 cut(s) | 730, 1965 |
| PstI | CTGCAG | 2 cut(s) | 1170, 3319 |
| PstNI | CAGNNNCTG | 1 cut(s) | 605 |
| PsuI | RGATCY | 4 cut(s) | 425, 1843, 2305, 2647 |
| PsyI | GACNNNGTC | 1 cut(s) | 2665 |
| PvuII | CAGCTG | 3 cut(s) | 1645, 2540, 3077 |
| RsaI | GTAC | 6 cut(s) | 1604, 1727, 2139, 2950, 3161, 3292 |
| RsaNI | GTAC | 6 cut(s) | 1603, 1726, 2138, 2949, 3160, 3291 |
| RseI | CAYNNNNRTG | 3 cut(s) | 843, 2904, 3045 |
| SacII | CCGCGG | 1 cut(s) | 493 |
| SapI | GCTCTTC | 1 cut(s) | 271 |
| SaqAI | TTAA | 9 cut(s) | 1074, 1632, 1767, 1869, 1926, 2004, 2333, 2349, 2394 |
| SbfI | CCTGCAGG | 1 cut(s) | 1170 |
| ScaI | AGTACT | 2 cut(s) | 1604, 2139 |
| SchI | GAGTC | 2 cut(s) | 2025, 2954 |
| SdaI | CCTGCAGG | 1 cut(s) | 1170 |
| SduI | GDGCHC | 7 cut(s) | 289, 387, 2182, 3026, 3131, 3153, 3190 |
| SfaNI | GCATC | 8 cut(s) | 342, 881, 1426, 1914, 2050, 2422, 2742, 2788 |
| SfcI | CTRYAG | 2 cut(s) | 1166, 3315 |
| Sfr274I | CTCGAG | 2 cut(s) | 730, 1965 |
| Sfr303I | CCGCGG | 1 cut(s) | 493 |
| SgrBI | CCGCGG | 1 cut(s) | 493 |
| SinI | GGWCC | 6 cut(s) | 158, 191, 224, 254, 296, 503 |
| SlaI | CTCGAG | 2 cut(s) | 730, 1965 |
| SmaI | CCCGGG | 1 cut(s) | 431 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 843, 2904, 3045 |
| SmlI | CTYRAG | 4 cut(s) | 591, 730, 1965, 2553 |
| SmoI | CTYRAG | 4 cut(s) | 591, 730, 1965, 2553 |
| SphI | GCATGC | 1 cut(s) | 2817 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1170 |
| SspI | AATATT | 1 cut(s) | 1339 |
| SspMI | CTAG | 5 cut(s) | 528, 1118, 1422, 2426, 3027 |
| StyI | CCWWGG | 5 cut(s) | 172, 205, 238, 268, 1692 |
| TaaI | ACNGT | 8 cut(s) | 1496, 1819, 1977, 2367, 2422, 2920, 2953, 3371 |
| TaiI | ACGT | 5 cut(s) | 852, 1102, 2346, 3215, 3256 |
| TaqI | TCGA | 4 cut(s) | 731, 1569, 1966, 3184 |
| TaqII | GACCGA | 1 cut(s) | 2481 |
| TatI | WGTACW | 2 cut(s) | 1602, 2137 |
| TauI | GCSGC | 4 cut(s) | 336, 339, 492, 2013 |
| TfiI | GAWTC | 5 cut(s) | 886, 926, 1293, 1882, 2519 |
| Tru1I | TTAA | 9 cut(s) | 1074, 1632, 1767, 1869, 1926, 2004, 2333, 2349, 2394 |
| Tru9I | TTAA | 9 cut(s) | 1074, 1632, 1767, 1869, 1926, 2004, 2333, 2349, 2394 |
| TseFI | GTSAC | 7 cut(s) | 583, 1260, 1771, 2462, 2494, 2848, 3229 |
| Tsp45I | GTSAC | 7 cut(s) | 583, 1260, 1771, 2462, 2494, 2848, 3229 |
| TspGWI | ACGGA | 3 cut(s) | 558, 2693, 3133 |
| TspMI | CCCGGG | 1 cut(s) | 429 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2665 |
| VneI | GTGCAC | 1 cut(s) | 3127 |
| VpaK11BI | GGWCC | 6 cut(s) | 158, 191, 224, 254, 296, 503 |
| VspI | ATTAAT | 1 cut(s) | 2394 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 33, 57, 765 |
| XapI | RAATTY | 8 cut(s) | 413, 1070, 1088, 2038, 2448, 2984, 3015, 3068 |
| XbaI | TCTAGA | 2 cut(s) | 1117, 1421 |
| XceI | RCATGY | 2 cut(s) | 1348, 2817 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2507 |
| XhoI | CTCGAG | 2 cut(s) | 730, 1965 |
| XmaI | CCCGGG | 1 cut(s) | 429 |
| XmiI | GTMKAC | 2 cut(s) | 977, 2958 |
| XmnI | GAANNNNTTC | 3 cut(s) | 684, 1010, 1125 |
| XspI | CTAG | 5 cut(s) | 528, 1118, 1422, 2426, 3027 |
| ZrmI | AGTACT | 2 cut(s) | 1604, 2139 |