Belongs to the argonaute family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Gly-rich_Ago1 | PF12764 | 97 - 208 | 2.7e-19 | Glycine-rich region of argonaut |
| ArgoN | PF16486 | 228 - 363 | 2e-38 | N-terminal domain of argonaute |
| ArgoL1 | PF08699 | 373 - 423 | 7.4e-22 | Argonaute linker 1 domain |
| PAZ | PF02170 | 455 - 565 | 3e-29 | PAZ domain |
| ArgoL2 | PF16488 | 575 - 621 | 2.1e-16 | Argonaute linker 2 domain |
| ArgoMid | PF16487 | 632 - 705 | 7.9e-09 | Mid domain of argonaute |
| Piwi | PF02171 | 726 - 1044 | 3.1e-116 | Piwi domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 581, 2177 |
| Acc16I | TGCGCA | 2 cut(s) | 1439, 2532 |
| Acc36I | ACCTGC | 2 cut(s) | 97, 2181 |
| Acc65I | GGTACC | 1 cut(s) | 2124 |
| AccB1I | GGYRCC | 2 cut(s) | 625, 2124 |
| AccI | GTMKAC | 2 cut(s) | 847, 878 |
| AccII | CGCG | 6 cut(s) | 1002, 1092, 1401, 3067, 3186, 3202 |
| AclWI | GGATC | 6 cut(s) | 952, 1769, 2250, 2576, 2589, 3166 |
| AcoI | YGGCCR | 5 cut(s) | 226, 364, 379, 1607, 2495 |
| AcsI | RAATTY | 4 cut(s) | 971, 989, 2229, 2949 |
| AcuI | CTGAAG | 2 cut(s) | 534, 1052 |
| AcvI | CACGTG | 1 cut(s) | 2983 |
| AcyI | GRCGYC | 1 cut(s) | 626 |
| AdeI | CACNNNGTG | 1 cut(s) | 1169 |
| AflII | CTTAAG | 1 cut(s) | 1697 |
| AflIII | ACRYGT | 3 cut(s) | 1245, 2278, 3065 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1752 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 819, 851 |
| AleI | CACNNNNGTG | 1 cut(s) | 2888 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1476, 1508 |
| Alw21I | GWGCWC | 8 cut(s) | 124, 601, 1375, 2089, 3124, 3178, 3209, 3217 |
| Alw26I | GTCTC | 5 cut(s) | 84, 1028, 1236, 2231, 3137 |
| Alw44I | GTGCAC | 2 cut(s) | 597, 1371 |
| AlwI | GGATC | 6 cut(s) | 952, 1769, 2250, 2576, 2589, 3166 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1303 |
| Ama87I | CYCGRG | 1 cut(s) | 428 |
| ApaI | GGGCCC | 1 cut(s) | 264 |
| ApaLI | GTGCAC | 2 cut(s) | 597, 1371 |
| ApeKI | GCWGC | 9 cut(s) | 247, 433, 565, 805, 995, 2471, 2937, 3110, 3230 |
| ApoI | RAATTY | 4 cut(s) | 971, 989, 2229, 2949 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3249, 3281 |
| Asp718I | GGTACC | 1 cut(s) | 2124 |
| AspLEI | GCGC | 8 cut(s) | 628, 1004, 1092, 1440, 1716, 2533, 2667, 3253 |
| AsuC2I | CCSGG | 1 cut(s) | 6 |
| AsuHPI | GGTGA | 9 cut(s) | 46, 383, 487, 823, 1181, 1696, 2228, 2497, 2801 |
| AvaI | CYCGRG | 1 cut(s) | 428 |
| AvaII | GGWCC | 6 cut(s) | 179, 326, 389, 407, 3197, 3221 |
| BaeGI | GKGCMC | 4 cut(s) | 264, 601, 1375, 2597 |
| BalI | TGGCCA | 1 cut(s) | 2497 |
| BamHI | GGATCC | 1 cut(s) | 2581 |
| BanI | GGYRCC | 2 cut(s) | 625, 2124 |
| BanII | GRGCYC | 2 cut(s) | 264, 3124 |
| BbrPI | CACGTG | 1 cut(s) | 2983 |
| BbsI | GAAGAC | 1 cut(s) | 1162 |
| Bbv12I | GWGCWC | 8 cut(s) | 124, 601, 1375, 2089, 3124, 3178, 3209, 3217 |
| BbvI | GCAGC | 9 cut(s) | 259, 420, 577, 817, 1007, 2483, 2949, 3097, 3217 |
| BccI | CCATC | 8 cut(s) | 793, 840, 854, 935, 1166, 1216, 2442, 3111 |
| BceAI | ACGGC | 5 cut(s) | 213, 351, 366, 1110, 2949 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 326, 360, 1763, 1797, 2522, 2556, 2714, 2748 |
| BciVI | GTATCC | 1 cut(s) | 2266 |
| BclI | TGATCA | 1 cut(s) | 2095 |
| BcnI | CCSGG | 1 cut(s) | 6 |
| BcoDI | GTCTC | 5 cut(s) | 84, 1028, 1236, 2231, 3137 |
| BfaI | CTAG | 4 cut(s) | 60, 603, 1107, 2121 |
| BfmI | CTRYAG | 3 cut(s) | 2935, 3020, 3231 |
| BfoI | RGCGCY | 2 cut(s) | 629, 1717 |
| BfrI | CTTAAG | 1 cut(s) | 1697 |
| BfuAI | ACCTGC | 2 cut(s) | 97, 2181 |
| BfuI | GTATCC | 1 cut(s) | 2266 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3107 |
| BglII | AGATCT | 1 cut(s) | 2560 |
| BmcAI | AGTACT | 1 cut(s) | 1535 |
| Bme18I | GGWCC | 6 cut(s) | 179, 326, 389, 407, 3197, 3221 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1752 |
| BmeT110I | CYCGRG | 1 cut(s) | 428 |
| BmrI | ACTGGG | 2 cut(s) | 443, 2254 |
| BmsI | GCATC | 6 cut(s) | 1039, 2122, 2356, 2676, 2722, 3050 |
| BmuI | ACTGGG | 2 cut(s) | 443, 2254 |
| BpiI | GAAGAC | 1 cut(s) | 1162 |
| Bpu10I | CCTNAGC | 2 cut(s) | 543, 1821 |
| BpuEI | CTTGAG | 2 cut(s) | 616, 1041 |
| BpuMI | CCSGG | 1 cut(s) | 6 |
| BsaAI | YACGTR | 2 cut(s) | 2983, 3051 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1341 |
| BsaHI | GRCGYC | 1 cut(s) | 626 |
| BsaI | GGTCTC | 1 cut(s) | 1028 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1395, 1425, 1932, 1962 |
| Bse118I | RCCGGY | 2 cut(s) | 181, 884 |
| Bse3DI | GCAATG | 2 cut(s) | 1271, 2142 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1341 |
| BseGI | GGATG | 6 cut(s) | 530, 1318, 2434, 2440, 2908, 2998 |
| BseJI | GATNNNNATC | 1 cut(s) | 1341 |
| BseMI | GCAATG | 2 cut(s) | 1271, 2142 |
| BseMII | CTCAG | 6 cut(s) | 66, 347, 534, 1232, 1835, 2600 |
| BseRI | GAGGAG | 1 cut(s) | 58 |
| BseSI | GKGCMC | 4 cut(s) | 264, 601, 1375, 2597 |
| BseXI | GCAGC | 9 cut(s) | 259, 420, 577, 817, 1007, 2483, 2949, 3097, 3217 |
| BseYI | CCCAGC | 3 cut(s) | 92, 114, 534 |
| BsgI | GTGCAG | 2 cut(s) | 419, 1830 |
| Bsh1236I | CGCG | 6 cut(s) | 1002, 1092, 1401, 3067, 3186, 3202 |
| BshNI | GGYRCC | 2 cut(s) | 625, 2124 |
| BsiHKAI | GWGCWC | 8 cut(s) | 124, 601, 1375, 2089, 3124, 3178, 3209, 3217 |
| BsiHKCI | CYCGRG | 1 cut(s) | 428 |
| BsiSI | CCGG | 7 cut(s) | 5, 182, 586, 885, 2149, 2969, 3089 |
| BsiWI | CGTACG | 1 cut(s) | 3051 |
| BslFI | GGGAC | 1 cut(s) | 2696 |
| BsmAI | GTCTC | 5 cut(s) | 84, 1028, 1236, 2231, 3137 |
| BsmBI | CGTCTC | 1 cut(s) | 2231 |
| BsmFI | GGGAC | 1 cut(s) | 2696 |
| BsmI | GAATGC | 1 cut(s) | 3113 |
| Bso31I | GGTCTC | 1 cut(s) | 1028 |
| BsoBI | CYCGRG | 1 cut(s) | 428 |
| Bsp120I | GGGCCC | 1 cut(s) | 260 |
| Bsp1407I | TGTACA | 1 cut(s) | 689 |
| Bsp143I | GATC | 8 cut(s) | 944, 1342, 1774, 2095, 2242, 2560, 2581, 3158 |
| Bsp19I | CCATGG | 1 cut(s) | 1623 |
| BspCNI | CTCAG | 6 cut(s) | 67, 346, 535, 1231, 1834, 2599 |
| BspFNI | CGCG | 6 cut(s) | 1002, 1092, 1401, 3067, 3186, 3202 |
| BspHI | TCATGA | 3 cut(s) | 82, 1720, 1864 |
| BspMAI | CTGCAG | 3 cut(s) | 2939, 3024, 3235 |
| BspMI | ACCTGC | 2 cut(s) | 97, 2181 |
| BspPI | GGATC | 6 cut(s) | 952, 1769, 2250, 2576, 2589, 3166 |
| BspQI | GCTCTTC | 1 cut(s) | 1401 |
| BspT107I | GGYRCC | 2 cut(s) | 625, 2124 |
| BspTI | CTTAAG | 1 cut(s) | 1697 |
| BspTNI | GGTCTC | 1 cut(s) | 1028 |
| BsrDI | GCAATG | 2 cut(s) | 1271, 2142 |
| BsrFI | RCCGGY | 2 cut(s) | 181, 884 |
| BsrGI | TGTACA | 1 cut(s) | 689 |
| BssAI | RCCGGY | 2 cut(s) | 181, 884 |
| BssMI | GATC | 8 cut(s) | 944, 1342, 1774, 2095, 2242, 2560, 2581, 3158 |
| BssNAI | GTATAC | 1 cut(s) | 879 |
| BssNI | GRCGYC | 1 cut(s) | 626 |
| BssT1I | CCWWGG | 4 cut(s) | 166, 1623, 1785, 2757 |
| Bst1107I | GTATAC | 1 cut(s) | 879 |
| Bst6I | CTCTTC | 5 cut(s) | 35, 660, 1401, 1939, 2570 |
| BstACI | GRCGYC | 1 cut(s) | 626 |
| BstAFI | CTTAAG | 1 cut(s) | 1697 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2315 |
| BstAUI | TGTACA | 1 cut(s) | 689 |
| BstBAI | YACGTR | 2 cut(s) | 2983, 3051 |
| BstDEI | CTNAG | 6 cut(s) | 75, 333, 543, 1218, 1821, 2586 |
| BstDSI | CCRYGG | 5 cut(s) | 229, 367, 382, 1623, 3200 |
| BstEII | GGTNACC | 2 cut(s) | 493, 1702 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 486, 905 |
| BstF5I | GGATG | 6 cut(s) | 530, 1318, 2434, 2440, 2908, 2998 |
| BstFNI | CGCG | 6 cut(s) | 1002, 1092, 1401, 3067, 3186, 3202 |
| BstH2I | RGCGCY | 2 cut(s) | 629, 1717 |
| BstHHI | GCGC | 8 cut(s) | 628, 1004, 1092, 1440, 1716, 2533, 2667, 3253 |
| BstKTI | GATC | 8 cut(s) | 947, 1345, 1777, 2098, 2245, 2563, 2584, 3161 |
| BstMAI | GTCTC | 5 cut(s) | 84, 1028, 1236, 2231, 3137 |
| BstMBI | GATC | 8 cut(s) | 944, 1342, 1774, 2095, 2242, 2560, 2581, 3158 |
| BstNSI | RCATGY | 3 cut(s) | 16, 1249, 2282 |
| BstPI | GGTNACC | 2 cut(s) | 493, 1702 |
| BstSFI | CTRYAG | 3 cut(s) | 2935, 3020, 3231 |
| BstSLI | GKGCMC | 4 cut(s) | 264, 601, 1375, 2597 |
| BstSNI | TACGTA | 1 cut(s) | 3051 |
| BstUI | CGCG | 6 cut(s) | 1002, 1092, 1401, 3067, 3186, 3202 |
| BstV1I | GCAGC | 9 cut(s) | 259, 420, 577, 817, 1007, 2483, 2949, 3097, 3217 |
| BstV2I | GAAGAC | 1 cut(s) | 1162 |
| BstX2I | RGATCY | 3 cut(s) | 2242, 2560, 2581 |
| BstYI | RGATCY | 3 cut(s) | 2242, 2560, 2581 |
| BstZ17I | GTATAC | 1 cut(s) | 879 |
| BsuI | GTATCC | 1 cut(s) | 2266 |
| BtgI | CCRYGG | 5 cut(s) | 229, 367, 382, 1623, 3200 |
| BtgZI | GCGATG | 1 cut(s) | 2525 |
| BtsCI | GGATG | 6 cut(s) | 530, 1318, 2434, 2440, 2908, 2998 |
| BtsI | GCAGTG | 1 cut(s) | 3240 |
| BveI | ACCTGC | 2 cut(s) | 97, 2181 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1303 |
| CciI | TCATGA | 3 cut(s) | 82, 1720, 1864 |
| CfoI | GCGC | 8 cut(s) | 628, 1004, 1092, 1440, 1716, 2533, 2667, 3253 |
| Cfr10I | RCCGGY | 2 cut(s) | 181, 884 |
| Cfr42I | CCGCGG | 1 cut(s) | 3203 |
| CseI | GACGC | 1 cut(s) | 3192 |
| CsiI | ACCWGGT | 1 cut(s) | 3217 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1348, 1383 |
| DdeI | CTNAG | 6 cut(s) | 75, 333, 543, 1218, 1821, 2586 |
| DinI | GGCGCC | 1 cut(s) | 627 |
| DpnI | GATC | 8 cut(s) | 946, 1344, 1776, 2097, 2244, 2562, 2583, 3160 |
| DpnII | GATC | 8 cut(s) | 944, 1342, 1774, 2095, 2242, 2560, 2581, 3158 |
| DraI | TTTAAA | 1 cut(s) | 916 |
| DraIII | CACNNNGTG | 1 cut(s) | 1169 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 581, 2177 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1752 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 581, 2177 |
| EaeI | YGGCCR | 5 cut(s) | 226, 364, 379, 1607, 2495 |
| Eam1104I | CTCTTC | 5 cut(s) | 35, 660, 1401, 1939, 2570 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1752 |
| EarI | CTCTTC | 5 cut(s) | 35, 660, 1401, 1939, 2570 |
| EciI | GGCGGA | 4 cut(s) | 126, 492, 575, 2358 |
| Ecl136II | GAGCTC | 1 cut(s) | 3122 |
| Eco105I | TACGTA | 1 cut(s) | 3051 |
| Eco130I | CCWWGG | 4 cut(s) | 166, 1623, 1785, 2757 |
| Eco147I | AGGCCT | 1 cut(s) | 2111 |
| Eco24I | GRGCYC | 2 cut(s) | 264, 3124 |
| Eco31I | GGTCTC | 1 cut(s) | 1028 |
| Eco47I | GGWCC | 6 cut(s) | 179, 326, 389, 407, 3197, 3221 |
| Eco53kI | GAGCTC | 1 cut(s) | 3122 |
| Eco57I | CTGAAG | 2 cut(s) | 534, 1052 |
| Eco72I | CACGTG | 1 cut(s) | 2983 |
| Eco88I | CYCGRG | 1 cut(s) | 428 |
| Eco91I | GGTNACC | 2 cut(s) | 493, 1702 |
| EcoICRI | GAGCTC | 1 cut(s) | 3122 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 486, 905 |
| EcoO109I | RGGNCCY | 2 cut(s) | 261, 3240 |
| EcoO65I | GGTNACC | 2 cut(s) | 493, 1702 |
| EcoRI | GAATTC | 1 cut(s) | 2949 |
| EcoT14I | CCWWGG | 4 cut(s) | 166, 1623, 1785, 2757 |
| EcoT38I | GRGCYC | 2 cut(s) | 264, 3124 |
| EgeI | GGCGCC | 1 cut(s) | 627 |
| EheI | GGCGCC | 1 cut(s) | 627 |
| ErhI | CCWWGG | 4 cut(s) | 166, 1623, 1785, 2757 |
| Esp3I | CGTCTC | 1 cut(s) | 2231 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1050, 1082 |
| FaqI | GGGAC | 1 cut(s) | 2696 |
| FauI | CCCGC | 2 cut(s) | 251, 3179 |
| FbaI | TGATCA | 1 cut(s) | 2095 |
| FblI | GTMKAC | 2 cut(s) | 847, 878 |
| FokI | GGATG | 6 cut(s) | 517, 1325, 2421, 2427, 2895, 3005 |
| FriOI | GRGCYC | 2 cut(s) | 264, 3124 |
| FspBI | CTAG | 4 cut(s) | 60, 603, 1107, 2121 |
| FspI | TGCGCA | 2 cut(s) | 1439, 2532 |
| GlaI | GCGC | 8 cut(s) | 627, 1003, 1091, 1439, 1715, 2532, 2666, 3252 |
| GsaI | CCCAGC | 3 cut(s) | 96, 118, 538 |
| HaeII | RGCGCY | 2 cut(s) | 629, 1717 |
| HapII | CCGG | 7 cut(s) | 5, 182, 586, 885, 2149, 2969, 3089 |
| HgaI | GACGC | 1 cut(s) | 3192 |
| HhaI | GCGC | 8 cut(s) | 628, 1004, 1092, 1440, 1716, 2533, 2667, 3253 |
| Hin1I | GRCGYC | 1 cut(s) | 626 |
| Hin6I | GCGC | 8 cut(s) | 626, 1002, 1090, 1438, 1714, 2531, 2665, 3251 |
| HinP1I | GCGC | 8 cut(s) | 626, 1002, 1090, 1438, 1714, 2531, 2665, 3251 |
| HincII | GTYRAC | 1 cut(s) | 2857 |
| HindII | GTYRAC | 1 cut(s) | 2857 |
| HpaII | CCGG | 7 cut(s) | 5, 182, 586, 885, 2149, 2969, 3089 |
| HphI | GGTGA | 9 cut(s) | 46, 383, 487, 823, 1181, 1696, 2228, 2497, 2801 |
| Hpy99I | CGWCG | 1 cut(s) | 1471 |
| HpyCH4IV | ACGT | 6 cut(s) | 844, 1466, 2380, 2806, 2982, 3050 |
| HpyF3I | CTNAG | 6 cut(s) | 75, 333, 543, 1218, 1821, 2586 |
| HpySE526I | ACGT | 6 cut(s) | 844, 1466, 2380, 2806, 2982, 3050 |
| Hsp92I | GRCGYC | 1 cut(s) | 626 |
| HspAI | GCGC | 8 cut(s) | 626, 1002, 1090, 1438, 1714, 2531, 2665, 3251 |
| KasI | GGCGCC | 1 cut(s) | 625 |
| KpnI | GGTACC | 1 cut(s) | 2128 |
| KroI | GCCGGC | 1 cut(s) | 884 |
| KroNI | GCCGGC | 1 cut(s) | 886 |
| Ksp22I | TGATCA | 1 cut(s) | 2095 |
| KspI | CCGCGG | 1 cut(s) | 3203 |
| Kzo9I | GATC | 8 cut(s) | 944, 1342, 1774, 2095, 2242, 2560, 2581, 3158 |
| LguI | GCTCTTC | 1 cut(s) | 1401 |
| Lsp1109I | GCAGC | 9 cut(s) | 259, 420, 577, 817, 1007, 2483, 2949, 3097, 3217 |
| LweI | GCATC | 6 cut(s) | 1039, 2122, 2356, 2676, 2722, 3050 |
| MabI | ACCWGGT | 1 cut(s) | 3217 |
| MaeI | CTAG | 4 cut(s) | 60, 603, 1107, 2121 |
| MaeII | ACGT | 6 cut(s) | 844, 1466, 2380, 2806, 2982, 3050 |
| MalI | GATC | 8 cut(s) | 946, 1344, 1776, 2097, 2244, 2562, 2583, 3160 |
| MboI | GATC | 8 cut(s) | 944, 1342, 1774, 2095, 2242, 2560, 2581, 3158 |
| MboII | GAAGA | 9 cut(s) | 52, 647, 1167, 1388, 1521, 1832, 1956, 2335, 2557 |
| MfeI | CAATTG | 2 cut(s) | 1954, 2466 |
| MflI | RGATCY | 3 cut(s) | 2242, 2560, 2581 |
| MlsI | TGGCCA | 1 cut(s) | 2497 |
| MluI | ACGCGT | 1 cut(s) | 3065 |
| MluNI | TGGCCA | 1 cut(s) | 2497 |
| Mly113I | GGCGCC | 1 cut(s) | 626 |
| MlyI | GAGTC | 5 cut(s) | 86, 127, 325, 1413, 2888 |
| MmeI | TCCRAC | 3 cut(s) | 1238, 1573, 2936 |
| Mox20I | TGGCCA | 1 cut(s) | 2497 |
| MroNI | GCCGGC | 1 cut(s) | 884 |
| MscI | TGGCCA | 1 cut(s) | 2497 |
| MseI | TTAA | 8 cut(s) | 915, 1386, 1463, 1698, 1968, 2055, 2114, 2616 |
| MslI | CAYNNNNRTG | 4 cut(s) | 29, 32, 744, 2888 |
| Msp20I | TGGCCA | 1 cut(s) | 2497 |
| MspA1I | CMGCKG | 6 cut(s) | 808, 1606, 2474, 3011, 3156, 3202 |
| MspCI | CTTAAG | 1 cut(s) | 1697 |
| MspI | CCGG | 7 cut(s) | 5, 182, 586, 885, 2149, 2969, 3089 |
| MunI | CAATTG | 2 cut(s) | 1954, 2466 |
| Mva1269I | GAATGC | 1 cut(s) | 3113 |
| MvnI | CGCG | 6 cut(s) | 1002, 1092, 1401, 3067, 3186, 3202 |
| NaeI | GCCGGC | 1 cut(s) | 886 |
| NarI | GGCGCC | 1 cut(s) | 626 |
| NciI | CCSGG | 1 cut(s) | 6 |
| NcoI | CCATGG | 1 cut(s) | 1623 |
| NdeII | GATC | 8 cut(s) | 944, 1342, 1774, 2095, 2242, 2560, 2581, 3158 |
| NgoMIV | GCCGGC | 1 cut(s) | 884 |
| NsbI | TGCGCA | 2 cut(s) | 1439, 2532 |
| NspI | RCATGY | 3 cut(s) | 16, 1249, 2282 |
| OliI | CACNNNNGTG | 1 cut(s) | 2888 |
| PagI | TCATGA | 3 cut(s) | 82, 1720, 1864 |
| PasI | CCCWGGG | 2 cut(s) | 190, 662 |
| PceI | AGGCCT | 1 cut(s) | 2111 |
| PciI | ACATGT | 2 cut(s) | 1245, 2278 |
| PciSI | GCTCTTC | 1 cut(s) | 1401 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 226, 1750, 2691 |
| PctI | GAATGC | 1 cut(s) | 3113 |
| PdiI | GCCGGC | 1 cut(s) | 886 |
| PfeI | GAWTC | 9 cut(s) | 787, 827, 1306, 1337, 1797, 1813, 2063, 2453, 2737 |
| Pfl23II | CGTACG | 1 cut(s) | 3051 |
| PflFI | GACNNNGTC | 1 cut(s) | 2687 |
| PfoI | TCCNGGA | 1 cut(s) | 3178 |
| PleI | GAGTC | 5 cut(s) | 85, 127, 325, 1412, 2888 |
| PluTI | GGCGCC | 1 cut(s) | 629 |
| PmaCI | CACGTG | 1 cut(s) | 2983 |
| PmlI | CACGTG | 1 cut(s) | 2983 |
| PpsI | GAGTC | 5 cut(s) | 85, 127, 325, 1412, 2888 |
| Ppu21I | YACGTR | 2 cut(s) | 2983, 3051 |
| PscI | ACATGT | 2 cut(s) | 1245, 2278 |
| Psp124BI | GAGCTC | 1 cut(s) | 3124 |
| PspCI | CACGTG | 1 cut(s) | 2983 |
| PspEI | GGTNACC | 2 cut(s) | 493, 1702 |
| PspFI | CCCAGC | 3 cut(s) | 92, 114, 534 |
| PspLI | CGTACG | 1 cut(s) | 3051 |
| PspOMI | GGGCCC | 1 cut(s) | 260 |
| PstI | CTGCAG | 3 cut(s) | 2939, 3024, 3235 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1303 |
| PsuI | RGATCY | 3 cut(s) | 2242, 2560, 2581 |
| PsyI | GACNNNGTC | 1 cut(s) | 2687 |
| PvuII | CAGCTG | 3 cut(s) | 808, 2474, 3011 |
| RseI | CAYNNNNRTG | 4 cut(s) | 29, 32, 744, 2888 |
| SacI | GAGCTC | 1 cut(s) | 3124 |
| SacII | CCGCGG | 1 cut(s) | 3203 |
| SapI | GCTCTTC | 1 cut(s) | 1401 |
| SaqAI | TTAA | 8 cut(s) | 915, 1386, 1463, 1698, 1968, 2055, 2114, 2616 |
| Sau3AI | GATC | 8 cut(s) | 944, 1342, 1774, 2095, 2242, 2560, 2581, 3158 |
| ScaI | AGTACT | 1 cut(s) | 1535 |
| SchI | GAGTC | 5 cut(s) | 86, 127, 325, 1413, 2888 |
| SexAI | ACCWGGT | 1 cut(s) | 3217 |
| SfaNI | GCATC | 6 cut(s) | 1039, 2122, 2356, 2676, 2722, 3050 |
| SfcI | CTRYAG | 3 cut(s) | 2935, 3020, 3231 |
| SfoI | GGCGCC | 1 cut(s) | 627 |
| Sfr303I | CCGCGG | 1 cut(s) | 3203 |
| SgrBI | CCGCGG | 1 cut(s) | 3203 |
| SinI | GGWCC | 6 cut(s) | 179, 326, 389, 407, 3197, 3221 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 29, 32, 744, 2888 |
| SmlI | CTYRAG | 3 cut(s) | 631, 1056, 1697 |
| SmoI | CTYRAG | 3 cut(s) | 631, 1056, 1697 |
| SnaBI | TACGTA | 1 cut(s) | 3051 |
| SseBI | AGGCCT | 1 cut(s) | 2111 |
| SspDI | GGCGCC | 1 cut(s) | 625 |
| SspI | AATATT | 1 cut(s) | 1240 |
| SspMI | CTAG | 4 cut(s) | 60, 603, 1107, 2121 |
| SstI | GAGCTC | 1 cut(s) | 3124 |
| StuI | AGGCCT | 1 cut(s) | 2111 |
| StyI | CCWWGG | 4 cut(s) | 166, 1623, 1785, 2757 |
| TaiI | ACGT | 6 cut(s) | 847, 1469, 2383, 2809, 2985, 3053 |
| TaqI | TCGA | 2 cut(s) | 1644, 2089 |
| TaqII | GACCGA | 1 cut(s) | 343 |
| TatI | WGTACW | 3 cut(s) | 689, 819, 1533 |
| TauI | GCSGC | 1 cut(s) | 1609 |
| TfiI | GAWTC | 9 cut(s) | 787, 827, 1306, 1337, 1797, 1813, 2063, 2453, 2737 |
| Tru1I | TTAA | 8 cut(s) | 915, 1386, 1463, 1698, 1968, 2055, 2114, 2616 |
| Tru9I | TTAA | 8 cut(s) | 915, 1386, 1463, 1698, 1968, 2055, 2114, 2616 |
| TseI | GCWGC | 9 cut(s) | 247, 433, 565, 805, 995, 2471, 2937, 3110, 3230 |
| TspGWI | ACGGA | 2 cut(s) | 2255, 2627 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2687 |
| Vha464I | CTTAAG | 1 cut(s) | 1697 |
| VneI | GTGCAC | 2 cut(s) | 597, 1371 |
| VpaK11BI | GGWCC | 6 cut(s) | 179, 326, 389, 407, 3197, 3221 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 486, 905 |
| XapI | RAATTY | 4 cut(s) | 971, 989, 2229, 2949 |
| XceI | RCATGY | 3 cut(s) | 16, 1249, 2282 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 173, 197, 2441 |
| XmiI | GTMKAC | 2 cut(s) | 847, 878 |
| XspI | CTAG | 4 cut(s) | 60, 603, 1107, 2121 |
| ZrmI | AGTACT | 1 cut(s) | 1535 |