Rmu_co8369415.1_g000001

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8369415.1
OG0001348
Physical Location & Seq
Reverse (-)
2 .. 924
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8369415.1_g000001.1.cds

Sequence Viewer

Length: 836 bp
atggtgaggaagaggagaactgagcttcctagcggaagtgaaagctctgagtctggttcccagcgtcccgctgctccaccagcacaacaacaacaaggtgccggaggtccccaagggggaaggggatctccgcctcaacaacagggtggaaggggagctccgcctcaacaacagggtggaggttaccaaggtggaagaggatctactccacagggagggcgtgggggttatggtggtggccgtggaggctatccaacgccacaacagcagtatggcggccctcctgaatatcaaggcagaggcaggggagggcctcctcagcaaggaggccgaggagggtacagtggcggtcgtggaggaccttctcctggtggcccatccagatcaccagtttccgagctgcaccaagcaaccccagttccttatcaagctggaatcacccctcagcctgcttatcaagcaagttcatcatctcatccacctgagccttcagaagtggcagagcagtttcagcaggtttccatccagcaagaggaagctcctagtcaggccattcaacgcgttccagtctctagcaagggtatgaggttccctcttcgccctggtaagggtaagactggcacaaggtgtacagtcaaggcaaatcatttctttgctgaattaccagacaaggatctgcaccaatatgatgtaactattacaccagaagtcacatcacggggtgtgaaccgtgctgtgatgtctcagctagtgaaaacctacaaggactcccatctttcaagccggcttcctgcttatgatggacggaagagcctgtatactgctggacctcttcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

279

Amino Acids

29.1

Weight (kDa)

10.11

Isoelectric Point (pI)

75.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 818
AccII CGCG 1 cut(s) 561
AciI CCGC 6 cut(s) 33, 69, 131, 161, 276, 348
AclWI GGATC 3 cut(s) 133, 208, 681
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 474
AdeI CACNNNGTG 2 cut(s) 627, 722
AfaI GTAC 2 cut(s) 341, 631
AfiI CCNNNNNNNGG 7 cut(s) 116, 215, 323, 368, 532, 607, 608
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 2 cut(s) 557, 780
AjnI CCWGG 2 cut(s) 367, 601
AloI GAACNNNNNNTCC 2 cut(s) 10, 42
AluBI AGCT 7 cut(s) 25, 45, 158, 400, 431, 539, 748
AluI AGCT 7 cut(s) 25, 45, 158, 400, 431, 539, 748
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 574, 747
AlwI GGATC 3 cut(s) 133, 208, 681
AoxI GGCC 6 cut(s) 238, 277, 311, 328, 373, 549
ApeKI GCWGC 2 cut(s) 71, 400
AspS9I GGNCC 6 cut(s) 107, 278, 311, 359, 374, 827
AsuHPI GGTGA 3 cut(s) 16, 378, 430
AvaII GGWCC 3 cut(s) 107, 359, 827
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
Bbv12I GWGCWC 1 cut(s) 160
BbvCI CCTCAGC 2 cut(s) 318, 444
BbvI GCAGC 2 cut(s) 58, 387
BccI CCATC 4 cut(s) 385, 530, 780, 794
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 369, 603
BcoDI GTCTC 2 cut(s) 574, 747
BfaI CTAG 4 cut(s) 30, 543, 573, 749
BfuAI ACCTGC 1 cut(s) 505
BglI GCCNNNNNGGC 1 cut(s) 246
BisI GCNGC 3 cut(s) 72, 277, 401
BlsI GCNGC 3 cut(s) 73, 278, 402
Bme1390I CCNGG 2 cut(s) 369, 603
Bme18I GGWCC 3 cut(s) 107, 359, 827
BmgT120I GGNCC 6 cut(s) 107, 278, 311, 359, 374, 827
BmiI GGNNCC 4 cut(s) 58, 100, 109, 590
BmrFI CCNGG 2 cut(s) 369, 603
BmrI ACTGGG 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 577, 609
Bpu10I CCTNAGC 3 cut(s) 318, 444, 483
BsaJI CCNNGG 5 cut(s) 112, 187, 241, 331, 601
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bsc4I CCNNNNNNNGG 7 cut(s) 116, 215, 323, 368, 532, 607, 608
Bse118I RCCGGY 1 cut(s) 783
Bse1I ACTGG 4 cut(s) 389, 416, 566, 622
BseBI CCWGG 2 cut(s) 369, 603
BseDI CCNNGG 5 cut(s) 112, 187, 241, 331, 601
BseGI GGATG 3 cut(s) 377, 475, 522
BseLI CCNNNNNNNGG 7 cut(s) 116, 215, 323, 368, 532, 607, 608
BseMII CTCAG 6 cut(s) 12, 39, 332, 458, 474, 758
BseNI ACTGG 4 cut(s) 389, 416, 566, 622
BseRI GAGGAG 3 cut(s) 28, 306, 348
BseXI GCAGC 2 cut(s) 58, 387
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 2 cut(s) 386, 662
Bsh1236I CGCG 1 cut(s) 561
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 6 cut(s) 240, 279, 313, 330, 375, 551
BshNI GGYRCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 102, 784
BslFI GGGAC 2 cut(s) 51, 93
BslI CCNNNNNNNGG 7 cut(s) 116, 215, 323, 368, 532, 607, 608
BsmAI GTCTC 2 cut(s) 574, 747
BsmFI GGGAC 2 cut(s) 51, 93
BsnI GGCC 6 cut(s) 240, 279, 313, 330, 375, 551
Bsp1286I GDGCHC 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 629
Bsp143I GATC 4 cut(s) 125, 200, 383, 673
BspACI CCGC 6 cut(s) 33, 69, 131, 161, 276, 348
BspANI GGCC 6 cut(s) 240, 279, 313, 330, 375, 551
BspCNI CTCAG 6 cut(s) 13, 40, 331, 457, 475, 757
BspFNI CGCG 1 cut(s) 561
BspLI GGNNCC 4 cut(s) 58, 100, 109, 590
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 3 cut(s) 133, 208, 681
BspQI GCTCTTC 1 cut(s) 803
BspT107I GGYRCC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 783
BsrGI TGTACA 1 cut(s) 629
BsrI ACTGG 4 cut(s) 389, 416, 566, 622
BssAI RCCGGY 1 cut(s) 783
BssECI CCNNGG 5 cut(s) 112, 187, 241, 331, 601
BssMI GATC 4 cut(s) 125, 200, 383, 673
BssNAI GTATAC 1 cut(s) 819
BssT1I CCWWGG 2 cut(s) 112, 187
Bst1107I GTATAC 1 cut(s) 819
Bst2UI CCWGG 2 cut(s) 369, 603
Bst4CI ACNGT 3 cut(s) 344, 634, 731
Bst6I CTCTTC 4 cut(s) 5, 190, 600, 803
BstAUI TGTACA 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 450, 785
BstDEI CTNAG 6 cut(s) 21, 48, 318, 444, 483, 744
BstDSI CCRYGG 1 cut(s) 241
BstEII GGTNACC 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 3 cut(s) 377, 475, 522
BstFNI CGCG 1 cut(s) 561
BstKTI GATC 4 cut(s) 128, 203, 386, 676
BstMAI GTCTC 2 cut(s) 574, 747
BstMBI GATC 4 cut(s) 125, 200, 383, 673
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 6 cut(s) 80, 246, 265, 319, 458, 511
BstNI CCWGG 2 cut(s) 369, 603
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 367, 601
BstUI CGCG 1 cut(s) 561
BstV1I GCAGC 2 cut(s) 58, 387
BstX2I RGATCY 3 cut(s) 125, 200, 673
BstYI RGATCY 3 cut(s) 125, 200, 673
BstZ17I GTATAC 1 cut(s) 819
BsuRI GGCC 6 cut(s) 240, 279, 313, 330, 375, 551
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 3 cut(s) 377, 475, 522
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 450, 785
Cfr10I RCCGGY 1 cut(s) 783
Cfr13I GGNCC 6 cut(s) 107, 278, 311, 359, 374, 827
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 340, 630
CviQI GTAC 2 cut(s) 340, 630
DdeI CTNAG 6 cut(s) 21, 48, 318, 444, 483, 744
DpnI GATC 4 cut(s) 127, 202, 385, 675
DpnII GATC 4 cut(s) 125, 200, 383, 673
DraIII CACNNNGTG 2 cut(s) 627, 722
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 4 cut(s) 5, 190, 600, 803
EarI CTCTTC 4 cut(s) 5, 190, 600, 803
EciI GGCGGA 2 cut(s) 120, 150
Ecl136II GAGCTC 1 cut(s) 158
Eco130I CCWWGG 2 cut(s) 112, 187
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 3 cut(s) 107, 359, 827
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 474
Eco91I GGTNACC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoO109I RGGNCCY 3 cut(s) 107, 311, 359
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 367, 601
EcoT14I CCWWGG 2 cut(s) 112, 187
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 2 cut(s) 112, 187
FaiI YATR 6 cut(s) 231, 273, 584, 687, 798, 819
FaqI GGGAC 2 cut(s) 51, 93
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 3 cut(s) 72, 277, 401
FokI GGATG 3 cut(s) 364, 462, 509
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 72, 277, 401
FspBI CTAG 4 cut(s) 30, 543, 573, 749
GluI GCNGC 3 cut(s) 72, 277, 401
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 6 cut(s) 240, 279, 313, 330, 375, 551
HapII CCGG 2 cut(s) 102, 784
HgaI GACGC 1 cut(s) 53
HinfI GANTC 3 cut(s) 50, 435, 767
HpaII CCGG 2 cut(s) 102, 784
HphI GGTGA 3 cut(s) 16, 378, 430
Hpy166II GTNNAC 3 cut(s) 630, 727, 819
Hpy188I TCNGA 3 cut(s) 49, 397, 493
Hpy188III TCNNGA 2 cut(s) 284, 381
Hpy8I GTNNAC 3 cut(s) 630, 727, 819
HpyAV CCTTC 4 cut(s) 114, 144, 372, 498
HpyCH4III ACNGT 3 cut(s) 344, 634, 731
HpyCH4V TGCA 2 cut(s) 403, 679
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 246, 265, 319, 458, 511
HpyF3I CTNAG 6 cut(s) 21, 48, 318, 444, 483, 744
KroI GCCGGC 1 cut(s) 783
KroNI GCCGGC 1 cut(s) 785
Kzo9I GATC 4 cut(s) 125, 200, 383, 673
LguI GCTCTTC 1 cut(s) 803
LmnI GCTCC 4 cut(s) 79, 155, 163, 544
Lsp1109I GCAGC 2 cut(s) 58, 387
MaeI CTAG 4 cut(s) 30, 543, 573, 749
MaeIII GTNAC 3 cut(s) 182, 691, 709
MalI GATC 4 cut(s) 127, 202, 385, 675
MboI GATC 4 cut(s) 125, 200, 383, 673
MboII GAAGA 5 cut(s) 22, 207, 587, 820, 824
MflI RGATCY 3 cut(s) 125, 200, 673
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 659
MluI ACGCGT 1 cut(s) 559
MlyI GAGTC 2 cut(s) 59, 761
MmeI TCCRAC 1 cut(s) 278
MroNI GCCGGC 1 cut(s) 783
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 102, 784
MspR9I CCNGG 2 cut(s) 369, 603
MvaI CCWGG 2 cut(s) 369, 603
MvnI CGCG 1 cut(s) 561
MwoI GCNNNNNNNGC 6 cut(s) 80, 246, 265, 319, 458, 511
NaeI GCCGGC 1 cut(s) 785
NdeII GATC 4 cut(s) 125, 200, 383, 673
NgoMIV GCCGGC 1 cut(s) 783
NlaIV GGNNCC 4 cut(s) 58, 100, 109, 590
NmeAIII GCCGAG 1 cut(s) 356
NmuCI GTSAC 1 cut(s) 709
PciSI GCTCTTC 1 cut(s) 803
PdiI GCCGGC 1 cut(s) 785
PfeI GAWTC 1 cut(s) 435
PkrI GCNGC 3 cut(s) 73, 278, 402
PleI GAGTC 2 cut(s) 58, 761
PpsI GAGTC 2 cut(s) 58, 761
PpuMI RGGWCCY 2 cut(s) 107, 359
Psp124BI GAGCTC 1 cut(s) 160
Psp5II RGGWCCY 2 cut(s) 107, 359
Psp6I CCWGG 2 cut(s) 367, 601
PspEI GGTNACC 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 2 cut(s) 367, 601
PspN4I GGNNCC 4 cut(s) 58, 100, 109, 590
PspPI GGNCC 6 cut(s) 107, 278, 311, 359, 374, 827
PspPPI RGGWCCY 2 cut(s) 107, 359
PsuI RGATCY 3 cut(s) 125, 200, 673
RsaI GTAC 2 cut(s) 341, 631
RsaNI GTAC 2 cut(s) 340, 630
RseI CAYNNNNRTG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 803
SatI GCNGC 3 cut(s) 72, 277, 401
Sau3AI GATC 4 cut(s) 125, 200, 383, 673
Sau96I GGNCC 6 cut(s) 107, 278, 311, 359, 374, 827
SchI GAGTC 2 cut(s) 59, 761
ScrFI CCNGG 2 cut(s) 369, 603
SduI GDGCHC 1 cut(s) 160
SinI GGWCC 3 cut(s) 107, 359, 827
SmiMI CAYNNNNRTG 1 cut(s) 684
Sse9I AATT 1 cut(s) 659
SsiI CCGC 6 cut(s) 33, 69, 131, 161, 276, 348
SspMI CTAG 4 cut(s) 30, 543, 573, 749
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 367, 601
StyI CCWWGG 2 cut(s) 112, 187
TaaI ACNGT 3 cut(s) 344, 634, 731
TasI AATT 1 cut(s) 659
TatI WGTACW 1 cut(s) 629
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 1 cut(s) 435
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 2 cut(s) 71, 400
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 1 cut(s) 456
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 107, 359, 827
XagI CCTNNNNNAGG 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 818
XspI CTAG 4 cut(s) 30, 543, 573, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.