Rorug06G0405900

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001348
Physical Location & Seq
Forward (+)
54965047 .. 54965805
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0405900.1

Sequence Viewer

Length: 759 bp
ATGGCTTTATCCATGTGGGTCTCTTTAAAATCTTCATTTCTGCAAAACCCAGATCCTCTTTTGCCCCAAATCTCACGCCCAAGTTGTCACTCCCAATCTCCACGAACCCCAGCGATCCGCTGCGGTCTGCGTGAGCTCCGAGAGAGAATTGATTCCATTAAGAGCACCCAGAAAATCACAGAAGCCATGAAGCTTGTAGCGGCTGCCAGGGTACGAAGAGCTCAAGACGCAGTCATCAATGGCCGGCCCTTCTCTGAGACCCTTGTGGAGGTTTTATACGACATCAATGAGCAGCTTCAAGGTGAAGACGTTGATATCCCTTTGACTAATGTTAGACCTGTCAAGAAAGTAGCCCTTGTGGTCATTACCAGTGATAGAGGTCTGTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCGCAGACCCGAATTGTGGAGTTGAGGAAATTTGGATTGGAGGTGGTTCTGATCAGCGTTGGGAAGAAGGGAAACTCGTATTTTATGCGTAGGCTGGAGATTAAGGTGGATAGGTTGATGGAAGGAGGGGCGTTTCCGACTGCGAAAGAAACTTCAATCAACTTAAATCCCCTTCTCAATCCGATAGCTTCTTTTCCTTTGATTATCGTCATTCCCTCCTTCTCTTCTTCCTGCTTCATCTCCACCATTTATGGGTTCTTAGTTCTTACAGAGAAGGGAAGAAAAAAGGAAAGGGAAGAAGAAGAAGACGACACGATATGGTGCTTCAGTCCACCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

252

Amino Acids

28.21

Weight (kDa)

9.24

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 43 - 190 2.1e-39 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 118, 123, 200
AclWI GGATC 2 cut(s) 47, 109
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 727
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 268, 433, 669
AgsI TTSAA 3 cut(s) 299, 397, 573
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AleI CACNNNNGTG 1 cut(s) 754
AluBI AGCT 5 cut(s) 136, 193, 221, 295, 605
AluI AGCT 5 cut(s) 136, 193, 221, 295, 605
Alw21I GWGCWC 3 cut(s) 138, 167, 223
Alw26I GTCTC 2 cut(s) 25, 251
AlwI GGATC 2 cut(s) 47, 109
AoxI GGCC 2 cut(s) 241, 245
ApeKI GCWGC 3 cut(s) 120, 203, 292
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 314
BanII GRGCYC 2 cut(s) 138, 223
BbsI GAAGAC 2 cut(s) 312, 729
Bbv12I GWGCWC 3 cut(s) 138, 167, 223
BbvI GCAGC 3 cut(s) 107, 190, 304
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 25, 251
BisI GCNGC 4 cut(s) 121, 201, 204, 293
BlsI GCNGC 4 cut(s) 122, 202, 205, 294
Bme1390I CCNGG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 208
BpiI GAAGAC 2 cut(s) 312, 729
BpmI CTGGAG 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 207
BsaI GGTCTC 2 cut(s) 25, 251
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 433, 669
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 268, 433, 669
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 107, 190, 304
BseYI CCCAGC 1 cut(s) 109
BshFI GGCC 2 cut(s) 243, 247
BsiHKAI GWGCWC 3 cut(s) 138, 167, 223
BsiSI CCGG 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 268, 433, 669
BsmAI GTCTC 2 cut(s) 25, 251
BsnI GGCC 2 cut(s) 243, 247
Bso31I GGTCTC 2 cut(s) 25, 251
Bsp1286I GDGCHC 3 cut(s) 138, 167, 223
Bsp143I GATC 3 cut(s) 52, 114, 468
BspACI CCGC 3 cut(s) 118, 123, 200
BspANI GGCC 2 cut(s) 243, 247
BspCNI CTCAG 1 cut(s) 247
BspPI GGATC 2 cut(s) 47, 109
BspQI GCTCTTC 1 cut(s) 211
BspTNI GGTCTC 2 cut(s) 25, 251
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 1 cut(s) 369
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 52, 114, 468
Bst2UI CCWGG 1 cut(s) 208
Bst6I CTCTTC 2 cut(s) 211, 646
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 255, 411, 676
BstENI CCTNNNNNAGG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 3 cut(s) 55, 117, 471
BstMAI GTCTC 2 cut(s) 25, 251
BstMBI GATC 3 cut(s) 52, 114, 468
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 107, 190, 304
BstV2I GAAGAC 2 cut(s) 312, 729
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 2 cut(s) 243, 247
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 212
CviAII CATG 2 cut(s) 13, 187
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 3 cut(s) 255, 411, 676
DpnI GATC 3 cut(s) 54, 116, 470
DpnII GATC 3 cut(s) 52, 114, 468
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 211, 646
EarI CTCTTC 2 cut(s) 211, 646
Ecl136II GAGCTC 2 cut(s) 136, 221
Eco24I GRGCYC 2 cut(s) 138, 223
Eco31I GGTCTC 2 cut(s) 25, 251
Eco32I GATATC 1 cut(s) 316
Eco53kI GAGCTC 2 cut(s) 136, 221
Eco57I CTGAAG 1 cut(s) 727
EcoICRI GAGCTC 2 cut(s) 136, 221
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 2 cut(s) 138, 223
FaeI CATG 2 cut(s) 16, 190
FaiI YATR 6 cut(s) 14, 188, 277, 503, 669, 736
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 2 cut(s) 12, 186
FbaI TGATCA 1 cut(s) 468
Fnu4HI GCNGC 4 cut(s) 121, 201, 204, 293
FriOI GRGCYC 2 cut(s) 138, 223
FseI GGCCGGCC 1 cut(s) 247
Fsp4HI GCNGC 4 cut(s) 121, 201, 204, 293
GlaI GCGC 1 cut(s) 420
GluI GCNGC 4 cut(s) 121, 201, 204, 293
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 2 cut(s) 243, 247
HapII CCGG 1 cut(s) 244
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 16, 190
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 244
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 749
Hpy188I TCNGA 5 cut(s) 140, 256, 468, 555, 600
Hpy188III TCNNGA 2 cut(s) 224, 343
Hpy8I GTNNAC 1 cut(s) 749
HpyAV CCTTC 6 cut(s) 259, 478, 533, 599, 646, 685
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 43, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 3 cut(s) 255, 411, 676
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 16, 190
HspAI GCGC 1 cut(s) 419
KroI GCCGGC 1 cut(s) 243
KroNI GCCGGC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 3 cut(s) 52, 114, 468
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 3 cut(s) 107, 190, 304
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 54, 116, 470
MboI GATC 3 cut(s) 52, 114, 468
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 3 cut(s) 138, 167, 223
MluCI AATT 3 cut(s) 147, 429, 446
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 7 cut(s) 66, 262, 371, 435, 451, 536, 643
Mph1103I ATGCAT 1 cut(s) 406
MroNI GCCGGC 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 151
MseI TTAA 4 cut(s) 26, 159, 519, 581
MslI CAYNNNNRTG 1 cut(s) 754
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 227
NaeI GCCGGC 1 cut(s) 245
NdeII GATC 3 cut(s) 52, 114, 468
NgoMIV GCCGGC 1 cut(s) 243
NlaIII CATG 2 cut(s) 16, 190
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 406
OliI CACNNNNGTG 1 cut(s) 754
PciSI GCTCTTC 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 152
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 4 cut(s) 122, 202, 205, 294
Psp124BI GAGCTC 2 cut(s) 138, 223
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 206
PspPI GGNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 52
PsyI GACNNNGTC 1 cut(s) 230
RigI GGCCGGCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 754
SacI GAGCTC 2 cut(s) 138, 223
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 4 cut(s) 26, 159, 519, 581
SatI GCNGC 4 cut(s) 121, 201, 204, 293
Sau3AI GATC 3 cut(s) 52, 114, 468
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 3 cut(s) 138, 167, 223
SmiMI CAYNNNNRTG 1 cut(s) 754
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 3 cut(s) 147, 429, 446
SsiI CCGC 3 cut(s) 118, 123, 200
SstI GAGCTC 2 cut(s) 138, 223
StyD4I CCNGG 1 cut(s) 206
TaiI ACGT 1 cut(s) 312
TasI AATT 3 cut(s) 147, 429, 446
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 4 cut(s) 26, 159, 519, 581
Tru9I TTAA 4 cut(s) 26, 159, 519, 581
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 3 cut(s) 120, 203, 292
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 24, 203, 643
TspRI CASTG 1 cut(s) 376
Tth111I GACNNNGTC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 266
XapI RAATTY 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.