RLG00000005537

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001348
Physical Location & Seq
Forward (+)
68376798 .. 68383439
6642 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005537

Sequence Viewer

Length: 3288 bp
ATGAAGAGGCGAGCAGGGTACGGCCCTCATCGGTTTTCTGCTTTTTACGACACCATCATGGTGAGGAAGAGGAGAACTGAGCTTCCGAGCGGAAGTGAAAGCTCTGAGTCTGGTTCCCAGCGTCCCGCTGCTTCACCGGCACAACAACAACAAGGTGCTGGAGGTCCCCAAGGGGGAAGGGGATCTCCGCCTCAACAGCAGGGTGGAGGAGTTTACCAAAGTGGAAGGGGAGCTCCGCCTCAACAACAGGGTGGAGGTTACCAGGGTGGAAGAGGATCTACTCCACAGGGAGGGCGTGGGGGTTATGGTGGTGGCCGTGGAGGCTATCCAACGCCACAACAGCAGTATGGCGGCCCTCCTGAATATCAAGGCAGAGGCAGGGGAGGGCCTCCTCAGCAAGGAGGCCGAGGAGGGTACAGTGGCGGTCGTGGAGGACCTTCTCCTGGTGGCCCATCCAGATCACCAGTTTCCGAGCTGCACCAAGCAACCCCAGTTCCTTATCAAGCTGGAATCACCCCCCAGCCTGCTTATCAAGCAAGTTCATCATCTCATCCACCTGAGCCTTCAGAAGTGGCAGAGCAGTTTCAGCAGGTTTCCATCCAGCAGGAGGAAGCTCCTAGTCAGGCCATTCAACGCGTTCCAGTTTCTAGCAAGGGTATGAGGTTCCCTCTTCGCCCTGGGAAGGGTAAGTCTGGCACAAGGTGTACAGTCAAGGCAAATCATTTCTTTGCTGAATTACCAGACAAGGATCTGCACCAATATGATGTAACTATTACACCAGAAGTCACATCACGGGGTGTAAACCGTGCTGTGATGTCTCAGCTAGTGAAAACCTACAAGGACTCCCATCTTTCAAGCCGGCTTCCTGCTTATGATGGACGGAAGAGCCTGTATACTGCTGGACCCCTTCCTTTCCAGTCGAAGGAGTTCAAAATCACTCTTCTGGATGATGAGGAGGGACAGGCTGGACAAGCTAGGCGAGAGAGAGATTTCAGAGTGGTGATTAAATTCGCTGCTCGTGCTGACCTTCACCATTTAGGTCTCTTTTTGCAAGGGAGGATAGCTGATGCACCCCAGGAGGCCCTTCAGGTTCTTGACATTGTTCTAAGGGAGTTGCCTACTTCTAGGTACTGTCCTGTGGGGCGTTCATTTTACGACCCTGGCTTGGGGAGAAGACAACCACTTGGTGAGGGTTTGGAAAGCTGGCGTGGTTTCTACCAGAGTATTCGTCCAACTCAAATGGGTCTATCTTTAAATATTGATATGTCCTCGACAGCTTTTATTGAGCCATTGCCAGTTATTGAGTTTGTAACCCAGCTACTGAATCGTGATGTTCAAGCGAGGCCACTTTCTGATTCTGATCGTGTAAAGATTAAAAAGGCTCTACGTGGAGTGAGGGTTGAAGTTACACACCGGGGAAATATGCGCAGAAAATACCGCATCTCTGGTTTAACGTCCCAGGCAACAAGAGAATTAACTTTTCCTGTGGATGAAAGAGGAACAATGAAATCGGTTGTTGAATACTTTCATGAAACCTATGGTTTTGCCATTCAACATCCATATTGGCCTTGTCTTCAAGTTGGAAATCAACAGCGACCAAACTATTTACCCATGGAGGTCTGTAAAATTGTTGAGGGACAAAGGTACTCCAAGAGACTGAATGAGAGACAGATAACTGCTTTGCTCAAGGTGACCTGTCAGCGCCCTCAAGAAAGGGAGCGTGATATTATGCAGACAGTACGCCATAATGCCTATGCTGAAGATCCTTATGCACAGGAATTCGGAATTAAAATTAGTGAGAATCTGGCTCAGGTTGAAGCTCGTATTCTTCCTCCACCATGGCTTAAATACCATGATACTGGAAGGGAAAAGGATTGCCTGCCCCAAGTTGGACAGTGGAATATGATGAATAAGAAAATGGTAAATGGAGGAAAAGTAACCAATTGGATCTGCATAAACTTTTCCCGCAATGTACAAGACAGTGTGGCAAAAGGATTTTGTTATGAACTTGCTCAGATGTGTCACATTTCTGGCATGGCATTTAACCCTGAGCCTGTGCTTCCACCAGTCAGTGCTCGACCCGATCAGGTGGAAAAGGTCTTAAAAACTCGATACCATGATGCAATGACGAAGATTCCGGGCAAGGAGCTTGACCTTCTTGTTGTCATTTTGCCAGATAATAATGGCTCTCTTTATGGTGATTTAAAAAGGATCTGTGAGACAGATCTTGGCCTAGTATCCCAGTGCTGTTTAACCAAACATGTGTTTAGAATGAGTAAACAGTATTTGGCAAACGTTGCCTTGAAGATAAATGTAAAGGTCGGGGGACGGAACACGGTACTTGTTGATGCAATCTCCAGGCGTATTCCCTTGGTCAGCGACCGTCCTACAATAATTTTTGGTGCAGATGTGACGCATCCTCACCCAGGGGAGGACTCAAGCCCATCAATTGCAGCTGTTGTGGCTTCTCAAGACTGGCCGGAAATTACCAAGTATGCTGGTTTAGTATGTGCTCAAGCCCATCGTCAGGAGCTCATCCAAGATTTGTTTAAACAGTGGCAGGATCCAGTAAAAGGGACAATGTCCGGTGGAATGATAAAGGAACTGCTTATTTCCTTTCGTAGAGCAACTGGGCAGAAGCCTCAACGCATCATTTTCTACAGGGATGGTGTCAGCGAGGGCCAATTCTACCAAGTTCTACTGTATGAACTTGATGCAATTCGTAAGGCCTGCGCTTCACTGGAGCCAAATTATCAGCCTCCTGTGACTTTTGTTGTTGTTCAAAAGCGTCATCATACAAGATTGTTTGCTGACAACCATCGTGATCGCAATGCAATTGACAGGAGTGGGAACATATTACCTGGTACGGTCGTGGACTCCAAAATCTGTCACCCAACTGAGTTTGACTTCTACCTCTGCAGCCATGCAGGAATTCAGGGTACAAGCCGCCCAGCTCACTACCATGTGCTGTGGGATGAAAATAAGTTCACAGCAGATGCACTCCAGTCCCTTACCAATAATCTTTGCTACACATATGCAAGGTGTACACGCTCAGTTTCAATTGTTCCTCCTGCATATTATGCTCATCTCGCGGCGTTCCGAGCGAGATTTTACATGGAGCCTGAGACCTCAGATAGCGGTTCAATGTCAAGTGGTGCTCATGGACGTGGAGGCGGCATGGCTGGTGCTGGTGGAGGACGGAGCACCCGAGCACCGGGTCCAAATGCTGCTGTGAGGCCTTTACCTGCACTGAAAGAGAATGTGAAGAAGGTCATGTTCTACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

1096

Amino Acids

121.21

Weight (kDa)

9.48

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly-rich_Ago1 PF12764 117 - 214 2.6e-24 Glycine-rich region of argonaut
ArgoN PF16486 234 - 369 1.4e-37 N-terminal domain of argonaute
ArgoL1 PF08699 379 - 429 1.3e-21 Argonaute linker 1 domain
PAZ PF02170 435 - 561 3.4e-30 PAZ domain
ArgoL2 PF16488 571 - 617 7.7e-18 Argonaute linker 2 domain
ArgoMid PF16487 628 - 703 1.5e-09 Mid domain of argonaute
Piwi PF02171 720 - 1039 7.3e-116 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1427
Acc36I ACCTGC 2 cut(s) 580, 3253
AccBSI CCGCTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 893
AccII CGCG 2 cut(s) 636, 3092
AclI AACGTT 1 cut(s) 2295
AclWI GGATC 8 cut(s) 190, 283, 756, 1757, 1955, 2219, 2558, 2571
AcoI YGGCCR 2 cut(s) 313, 2477
AcsI RAATTY 3 cut(s) 1007, 1778, 2931
AcuI CTGAAG 3 cut(s) 549, 1070, 1779
AdeI CACNNNGTG 3 cut(s) 702, 797, 1187
AflIII ACRYGT 2 cut(s) 634, 2260
AjiI CACGTC 1 cut(s) 3167
AjnI CCWGG 9 cut(s) 261, 442, 676, 1074, 1159, 1458, 2357, 2425, 2860
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
Alw21I GWGCWC 7 cut(s) 235, 2077, 2515, 2535, 3160, 3206, 3214
Alw26I GTCTC 6 cut(s) 822, 1046, 1648, 1660, 2213, 3119
AlwI GGATC 8 cut(s) 190, 283, 756, 1757, 1955, 2219, 2558, 2571
AlwNI CAGNNNCTG 1 cut(s) 1321
Ama87I CYCGRG 1 cut(s) 3207
ApeKI GCWGC 6 cut(s) 128, 475, 1013, 2453, 2919, 3227
ApoI RAATTY 3 cut(s) 1007, 1778, 2931
Asp700I GAANNNNTTC 2 cut(s) 926, 1524
AspLEI GCGC 3 cut(s) 1428, 1704, 2735
AsuC2I CCSGG 3 cut(s) 1415, 2139, 3216
AvaI CYCGRG 1 cut(s) 3207
AvaII GGWCC 4 cut(s) 164, 434, 902, 3218
BaeI ACNNNNGTAYC 2 cut(s) 2856, 2889
BamHI GGATCC 1 cut(s) 2563
BanII GRGCYC 2 cut(s) 235, 2535
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BauI CACGAG 1 cut(s) 1017
BbsI GAAGAC 2 cut(s) 1180, 1565
Bbv12I GWGCWC 7 cut(s) 235, 2077, 2515, 2535, 3160, 3206, 3214
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 6 cut(s) 115, 462, 1000, 2465, 2931, 3214
BccI CCATC 9 cut(s) 62, 460, 605, 855, 869, 2452, 2529, 2660, 2826
BceAI ACGGC 2 cut(s) 37, 300
BciT130I CCWGG 9 cut(s) 263, 444, 678, 1076, 1161, 1460, 2359, 2427, 2862
BciVI GTATCC 1 cut(s) 2248
BcnI CCSGG 3 cut(s) 1415, 2139, 3216
BcoDI GTCTC 6 cut(s) 822, 1046, 1648, 1660, 2213, 3119
BfaI CTAG 7 cut(s) 618, 648, 824, 975, 1125, 2234, 3286
BfmI CTRYAG 2 cut(s) 2659, 2917
BfoI RGCGCY 1 cut(s) 1705
BfuAI ACCTGC 2 cut(s) 580, 3253
BfuI GTATCC 1 cut(s) 2248
BglI GCCNNNNNGGC 1 cut(s) 321
BglII AGATCT 1 cut(s) 2224
Bme18I GGWCC 4 cut(s) 164, 434, 902, 3218
BmeT110I CYCGRG 1 cut(s) 3207
BmgBI CACGTC 1 cut(s) 3167
BmiI GGNNCC 8 cut(s) 115, 166, 665, 904, 2565, 2745, 3120, 3219
BmrI ACTGGG 3 cut(s) 485, 2236, 2640
BmsI GCATC 8 cut(s) 1057, 1449, 2110, 2338, 2425, 2658, 2704, 2986
BmuI ACTGGG 3 cut(s) 485, 2236, 2640
BpiI GAAGAC 2 cut(s) 1180, 1565
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpmI CTGGAG 4 cut(s) 180, 2341, 2762, 2987
Bpu10I CCTNAGC 4 cut(s) 393, 558, 1809, 2049
BpuEI CTTGAG 5 cut(s) 1670, 1692, 2422, 2454, 2499
BpuMI CCSGG 3 cut(s) 1415, 2139, 3216
BsaAI YACGTR 1 cut(s) 1388
BsaBI GATNNNNATC 1 cut(s) 1359
BsaI GGTCTC 2 cut(s) 1046, 3119
BsaWI WCCGGW 1 cut(s) 2585
BsaXI ACNNNNNCTCC 6 cut(s) 827, 857, 1383, 1413, 1920, 1950
Bse118I RCCGGY 2 cut(s) 136, 858
Bse3DI GCAATG 4 cut(s) 1289, 1975, 2130, 2836
Bse8I GATNNNNATC 1 cut(s) 1359
BseBI CCWGG 9 cut(s) 263, 444, 678, 1076, 1161, 1460, 2359, 2427, 2862
BseJI GATNNNNATC 1 cut(s) 1359
BseMI GCAATG 4 cut(s) 1289, 1975, 2130, 2836
BseRI GAGGAG 5 cut(s) 85, 222, 381, 423, 968
BseXI GCAGC 6 cut(s) 115, 462, 1000, 2465, 2931, 3214
BseYI CCCAGC 4 cut(s) 117, 519, 1314, 2950
BsgI GTGCAG 4 cut(s) 461, 737, 2424, 3231
Bsh1236I CGCG 2 cut(s) 636, 3092
Bsh1285I CGRYCG 3 cut(s) 427, 2383, 2871
BsiEI CGRYCG 3 cut(s) 427, 2383, 2871
BsiHKAI GWGCWC 7 cut(s) 235, 2077, 2515, 2535, 3160, 3206, 3214
BsiHKCI CYCGRG 1 cut(s) 3207
BsiSI CCGG 7 cut(s) 137, 859, 1414, 2138, 2480, 2586, 3215
BslFI GGGAC 8 cut(s) 108, 150, 972, 1441, 1650, 2340, 2590, 2992
BsmAI GTCTC 6 cut(s) 822, 1046, 1648, 1660, 2213, 3119
BsmFI GGGAC 8 cut(s) 108, 150, 972, 1441, 1650, 2340, 2590, 2992
Bso31I GGTCTC 2 cut(s) 1046, 3119
BsoBI CYCGRG 1 cut(s) 3207
Bsp1286I GDGCHC 7 cut(s) 235, 2077, 2515, 2535, 3160, 3206, 3214
Bsp1407I TGTACA 3 cut(s) 704, 1972, 3044
Bsp19I CCATGG 2 cut(s) 1611, 1838
BspFNI CGCG 2 cut(s) 636, 3092
BspHI TCATGA 1 cut(s) 1528
BspLI GGNNCC 8 cut(s) 115, 166, 665, 904, 2565, 2745, 3120, 3219
BspMAI CTGCAG 1 cut(s) 2921
BspMI ACCTGC 2 cut(s) 580, 3253
BspPI GGATC 8 cut(s) 190, 283, 756, 1757, 1955, 2219, 2558, 2571
BspQI GCTCTTC 1 cut(s) 878
BspTNI GGTCTC 2 cut(s) 1046, 3119
BsrBI CCGCTC 1 cut(s) 90
BsrDI GCAATG 4 cut(s) 1289, 1975, 2130, 2836
BsrFI RCCGGY 2 cut(s) 136, 858
BsrGI TGTACA 3 cut(s) 704, 1972, 3044
BssAI RCCGGY 2 cut(s) 136, 858
BssNAI GTATAC 1 cut(s) 894
BssSI CACGAG 1 cut(s) 1017
BssT1I CCWWGG 4 cut(s) 169, 1611, 1838, 2370
Bst1107I GTATAC 1 cut(s) 894
Bst2BI CACGAG 1 cut(s) 1017
Bst2UI CCWGG 9 cut(s) 263, 444, 678, 1076, 1161, 1460, 2359, 2427, 2862
Bst6I CTCTTC 5 cut(s) 62, 265, 675, 878, 945
BstAPI GCANNNNNTGC 2 cut(s) 2297, 3080
BstAUI TGTACA 3 cut(s) 704, 1972, 3044
BstBAI YACGTR 1 cut(s) 1388
BstC8I GCNNGC 6 cut(s) 12, 525, 860, 1205, 1880, 2731
BstDSI CCRYGG 3 cut(s) 316, 1611, 1838
BstEII GGTNACC 2 cut(s) 257, 1690
BstENI CCTNNNNNAGG 2 cut(s) 396, 2424
BstFNI CGCG 2 cut(s) 636, 3092
BstH2I RGCGCY 1 cut(s) 1705
BstHHI GCGC 3 cut(s) 1428, 1704, 2735
BstMAI GTCTC 6 cut(s) 822, 1046, 1648, 1660, 2213, 3119
BstMCI CGRYCG 3 cut(s) 427, 2383, 2871
BstNI CCWGG 9 cut(s) 263, 444, 678, 1076, 1161, 1460, 2359, 2427, 2862
BstNSI RCATGY 1 cut(s) 2264
BstPI GGTNACC 2 cut(s) 257, 1690
BstSFI CTRYAG 2 cut(s) 2659, 2917
BstUI CGCG 2 cut(s) 636, 3092
BstV1I GCAGC 6 cut(s) 115, 462, 1000, 2465, 2931, 3214
BstV2I GAAGAC 2 cut(s) 1180, 1565
BstX2I RGATCY 8 cut(s) 182, 275, 748, 1762, 1947, 2211, 2224, 2563
BstXI CCANNNNNNTGG 1 cut(s) 1859
BstYI RGATCY 8 cut(s) 182, 275, 748, 1762, 1947, 2211, 2224, 2563
BstZ17I GTATAC 1 cut(s) 894
BsuI GTATCC 1 cut(s) 2248
BtgI CCRYGG 3 cut(s) 316, 1611, 1838
BtrI CACGTC 1 cut(s) 3167
BtsIMutI CAGTG 8 cut(s) 424, 1901, 1987, 2077, 2249, 2561, 2738, 3248
BveI ACCTGC 2 cut(s) 580, 3253
Cac8I GCNNGC 6 cut(s) 12, 525, 860, 1205, 1880, 2731
CaiI CAGNNNCTG 1 cut(s) 1321
CciI TCATGA 1 cut(s) 1528
CfoI GCGC 3 cut(s) 1428, 1704, 2735
Cfr10I RCCGGY 2 cut(s) 136, 858
CseI GACGC 3 cut(s) 110, 2422, 2777
CsiI ACCWGGT 1 cut(s) 2860
DraI TTTAAA 3 cut(s) 1254, 2205, 2551
DraIII CACNNNGTG 3 cut(s) 702, 797, 1187
EaeI YGGCCR 2 cut(s) 313, 2477
Eam1104I CTCTTC 5 cut(s) 62, 265, 675, 878, 945
EarI CTCTTC 5 cut(s) 62, 265, 675, 878, 945
EciI GGCGGA 2 cut(s) 177, 225
Ecl136II GAGCTC 2 cut(s) 233, 2533
Eco130I CCWWGG 4 cut(s) 169, 1611, 1838, 2370
Eco147I AGGCCT 2 cut(s) 2729, 3238
Eco24I GRGCYC 2 cut(s) 235, 2535
Eco31I GGTCTC 2 cut(s) 1046, 3119
Eco47I GGWCC 4 cut(s) 164, 434, 902, 3218
Eco53kI GAGCTC 2 cut(s) 233, 2533
Eco57I CTGAAG 3 cut(s) 549, 1070, 1779
Eco88I CYCGRG 1 cut(s) 3207
Eco91I GGTNACC 2 cut(s) 257, 1690
EcoICRI GAGCTC 2 cut(s) 233, 2533
EcoNI CCTNNNNNAGG 2 cut(s) 396, 2424
EcoO109I RGGNCCY 4 cut(s) 164, 386, 434, 1081
EcoO65I GGTNACC 2 cut(s) 257, 1690
EcoRI GAATTC 2 cut(s) 1778, 2931
EcoRII CCWGG 9 cut(s) 261, 442, 676, 1074, 1159, 1458, 2357, 2425, 2860
EcoT14I CCWWGG 4 cut(s) 169, 1611, 1838, 2370
EcoT38I GRGCYC 2 cut(s) 235, 2535
ErhI CCWWGG 4 cut(s) 169, 1611, 1838, 2370
FaqI GGGAC 8 cut(s) 108, 150, 972, 1441, 1650, 2340, 2590, 2992
FauI CCCGC 2 cut(s) 133, 1973
FauNDI CATATG 1 cut(s) 3034
FblI GTMKAC 1 cut(s) 893
FriOI GRGCYC 2 cut(s) 235, 2535
FspBI CTAG 7 cut(s) 618, 648, 824, 975, 1125, 2234, 3286
FspI TGCGCA 1 cut(s) 1427
GlaI GCGC 3 cut(s) 1427, 1703, 2734
GsaI CCCAGC 4 cut(s) 121, 523, 1318, 2954
GsuI CTGGAG 4 cut(s) 180, 2341, 2762, 2987
HaeII RGCGCY 1 cut(s) 1705
HapII CCGG 7 cut(s) 137, 859, 1414, 2138, 2480, 2586, 3215
HgaI GACGC 3 cut(s) 110, 2422, 2777
HhaI GCGC 3 cut(s) 1428, 1704, 2735
Hin6I GCGC 3 cut(s) 1426, 1702, 2733
HinP1I GCGC 3 cut(s) 1426, 1702, 2733
HinfI GANTC 9 cut(s) 107, 510, 842, 1324, 1355, 1801, 2134, 2435, 2876
HpaII CCGG 7 cut(s) 137, 859, 1414, 2138, 2480, 2586, 3215
Hpy166II GTNNAC 9 cut(s) 214, 705, 802, 894, 2279, 2875, 2988, 3045, 3047
Hpy8I GTNNAC 9 cut(s) 214, 705, 802, 894, 2279, 2875, 2988, 3045, 3047
HpyCH4IV ACGT 4 cut(s) 1387, 1454, 2295, 3166
HpySE526I ACGT 4 cut(s) 1387, 1454, 2295, 3166
HspAI GCGC 3 cut(s) 1426, 1702, 2733
KroI GCCGGC 1 cut(s) 858
KroNI GCCGGC 1 cut(s) 860
LguI GCTCTTC 1 cut(s) 878
LmnI GCTCC 9 cut(s) 230, 238, 619, 1717, 2146, 2530, 2743, 3118, 3201
Lsp1109I GCAGC 6 cut(s) 115, 462, 1000, 2465, 2931, 3214
LweI GCATC 8 cut(s) 1057, 1449, 2110, 2338, 2425, 2658, 2704, 2986
MabI ACCWGGT 1 cut(s) 2860
MaeI CTAG 7 cut(s) 618, 648, 824, 975, 1125, 2234, 3286
MaeII ACGT 4 cut(s) 1387, 1454, 2295, 3166
MbiI CCGCTC 1 cut(s) 90
MfeI CAATTG 4 cut(s) 1942, 2448, 2835, 3060
MflI RGATCY 8 cut(s) 182, 275, 748, 1762, 1947, 2211, 2224, 2563
MhlI GDGCHC 7 cut(s) 235, 2077, 2515, 2535, 3160, 3206, 3214
MluI ACGCGT 1 cut(s) 634
MlyI GAGTC 4 cut(s) 116, 836, 2429, 2870
MmeI TCCRAC 4 cut(s) 353, 1256, 1561, 1870
MroNI GCCGGC 1 cut(s) 858
MroXI GAANNNNTTC 2 cut(s) 926, 1524
MslI CAYNNNNRTG 5 cut(s) 56, 59, 759, 2961, 3165
MspA1I CMGCKG 2 cut(s) 128, 2456
MspI CCGG 7 cut(s) 137, 859, 1414, 2138, 2480, 2586, 3215
MssI GTTTAAAC 1 cut(s) 2551
MunI CAATTG 4 cut(s) 1942, 2448, 2835, 3060
MvaI CCWGG 9 cut(s) 263, 444, 678, 1076, 1161, 1460, 2359, 2427, 2862
MvnI CGCG 2 cut(s) 636, 3092
NaeI GCCGGC 1 cut(s) 860
NciI CCSGG 3 cut(s) 1415, 2139, 3216
NcoI CCATGG 2 cut(s) 1611, 1838
NdeI CATATG 1 cut(s) 3034
NgoMIV GCCGGC 1 cut(s) 858
NlaIV GGNNCC 8 cut(s) 115, 166, 665, 904, 2565, 2745, 3120, 3219
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 6 cut(s) 784, 1690, 2021, 2410, 2764, 2888
NsbI TGCGCA 1 cut(s) 1427
NspI RCATGY 1 cut(s) 2264
PagI TCATGA 1 cut(s) 1528
PasI CCCWGGG 2 cut(s) 677, 2426
PceI AGGCCT 2 cut(s) 2729, 3238
PciI ACATGT 1 cut(s) 2260
PciSI GCTCTTC 1 cut(s) 878
PcsI WCGNNNNNNNCGW 1 cut(s) 3205
PdiI GCCGGC 1 cut(s) 860
PdmI GAANNNNTTC 2 cut(s) 926, 1524
PfeI GAWTC 5 cut(s) 510, 1324, 1355, 1801, 2134
PflFI GACNNNGTC 1 cut(s) 2581
PleI GAGTC 4 cut(s) 115, 836, 2429, 2870
PmeI GTTTAAAC 1 cut(s) 2551
PpsI GAGTC 4 cut(s) 115, 836, 2429, 2870
Ppu21I YACGTR 1 cut(s) 1388
PpuMI RGGWCCY 2 cut(s) 164, 434
PscI ACATGT 1 cut(s) 2260
Psp124BI GAGCTC 2 cut(s) 235, 2535
Psp1406I AACGTT 1 cut(s) 2295
Psp5II RGGWCCY 2 cut(s) 164, 434
Psp6I CCWGG 9 cut(s) 261, 442, 676, 1074, 1159, 1458, 2357, 2425, 2860
PspEI GGTNACC 2 cut(s) 257, 1690
PspFI CCCAGC 4 cut(s) 117, 519, 1314, 2950
PspGI CCWGG 9 cut(s) 261, 442, 676, 1074, 1159, 1458, 2357, 2425, 2860
PspN4I GGNNCC 8 cut(s) 115, 166, 665, 904, 2565, 2745, 3120, 3219
PspPPI RGGWCCY 2 cut(s) 164, 434
PstI CTGCAG 1 cut(s) 2921
PstNI CAGNNNCTG 1 cut(s) 1321
PsuI RGATCY 8 cut(s) 182, 275, 748, 1762, 1947, 2211, 2224, 2563
PsyI GACNNNGTC 1 cut(s) 2581
PvuII CAGCTG 1 cut(s) 2456
RseI CAYNNNNRTG 5 cut(s) 56, 59, 759, 2961, 3165
SacI GAGCTC 2 cut(s) 235, 2535
SapI GCTCTTC 1 cut(s) 878
SchI GAGTC 4 cut(s) 116, 836, 2429, 2870
SduI GDGCHC 7 cut(s) 235, 2077, 2515, 2535, 3160, 3206, 3214
SexAI ACCWGGT 1 cut(s) 2860
SfaNI GCATC 8 cut(s) 1057, 1449, 2110, 2338, 2425, 2658, 2704, 2986
SfcI CTRYAG 2 cut(s) 2659, 2917
SinI GGWCC 4 cut(s) 164, 434, 902, 3218
SmiMI CAYNNNNRTG 5 cut(s) 56, 59, 759, 2961, 3165
SmlI CTYRAG 5 cut(s) 1685, 1707, 2437, 2469, 2514
SmoI CTYRAG 5 cut(s) 1685, 1707, 2437, 2469, 2514
SseBI AGGCCT 2 cut(s) 2729, 3238
SspI AATATT 1 cut(s) 1258
SspMI CTAG 7 cut(s) 618, 648, 824, 975, 1125, 2234, 3286
SstI GAGCTC 2 cut(s) 235, 2535
StuI AGGCCT 2 cut(s) 2729, 3238
StyI CCWWGG 4 cut(s) 169, 1611, 1838, 2370
TaiI ACGT 4 cut(s) 1390, 1457, 2298, 3169
TaqI TCGA 4 cut(s) 920, 1271, 2077, 2110
TatI WGTACW 3 cut(s) 704, 1972, 3044
TauI GCSGC 4 cut(s) 354, 2949, 3095, 3177
TfiI GAWTC 5 cut(s) 510, 1324, 1355, 1801, 2134
TscAI CASTG 8 cut(s) 424, 1901, 1987, 2077, 2249, 2561, 2745, 3255
TseFI GTSAC 6 cut(s) 784, 1690, 2021, 2410, 2764, 2888
TseI GCWGC 6 cut(s) 128, 475, 1013, 2453, 2919, 3227
Tsp45I GTSAC 6 cut(s) 784, 1690, 2021, 2410, 2764, 2888
TspGWI ACGGA 3 cut(s) 895, 2344, 3214
TspRI CASTG 8 cut(s) 424, 1901, 1987, 2077, 2249, 2561, 2745, 3255
Tth111I GACNNNGTC 1 cut(s) 2581
VpaK11BI GGWCC 4 cut(s) 164, 434, 902, 3218
XagI CCTNNNNNAGG 2 cut(s) 396, 2424
XapI RAATTY 3 cut(s) 1007, 1778, 2931
XceI RCATGY 1 cut(s) 2264
XmiI GTMKAC 1 cut(s) 893
XmnI GAANNNNTTC 2 cut(s) 926, 1524
XspI CTAG 7 cut(s) 618, 648, 824, 975, 1125, 2234, 3286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.