Rh7CG005800

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001348
Physical Location & Seq
Reverse (-)
460002 .. 462432
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG005800.1

Sequence Viewer

Length: 1071 bp
ATGAAATCTGTTGTTGACTACTTTCATGAAACTTATGGTTTCATTATAAAGCATACTCAGTTGCCGTGTCTACAAGTGGGAAATCAGCAGAGATCAAATTACTTGCCCATGGAGGTAAATAAATGCTACTCTTTTCGTCATTATAAGCTCTACAAGCATGTTAATAGGAAGTCATTGTTGCAGGTCTGTAAAATAGTTGAAGGTCAAAGGTACTCCAGGAGGTTGAATGAGAGACAGATTACTGCTTTGCTGAAGGTGACCTGCCAGCGTCCTCATGAAAGGGAACGTGATATTATCCAGACAGTTCGTCAAAACGCTTACCATGAAGATCCTTATGCTCAGGAGTTTGGCATTAAAATCAGTGAGAATCTCACTTTGCTTGAAGCTCGTATTCTTCCTGCACCAAGAGCATTTAATCCAGAACCAGTACTTCCACCTGTCACCGCTCATCCCGGTCATGTCGAGAGGGCCCTAAAATCTCGCTTTCATGAAGCACTGACCAAACTCCAGCCCCGCGGCCAGGAGCTTGAGCTACTTATTGCTATTTTGCCAGATAATAATGGCTCTCTTTATGGTGATTTGAAGCGAATTTGTGAGACGGATCTCGGCCTTGTTTCCCAATGCTGTTTAACAAAGCATGTATTTAAAAACAATAAGCAACAGTATTTGGCAAATGTAACGTTGAAGATCAACGTGAAGGTCGGGGGAAGGAATACAGTGCTTGTTGATGCTCTGTCCAGGCGAATTCCTTTAGTCAGTGATCGGCCTACCATCATTTTTGGTGCTGATGTCACCCATCCTCATCCTGGAGAGGATTCAAGTCCGTCAATTGCAGCGGTTGTGGCTTCTCAAGATTGGCCTGAAGTTACAAAGTATGCTGGTTTGGTTTCTGCTCAAACCCATCGACAGGAACTCATCCAAGATTTGTTCAAAACATGGCAGGATCCAGCAAAGGGGACAATGTCTGGTGGCATGATCAAGGAACTGCTCATATCTTTCCGTAGATCAACTGGGCAAAAACCACAACGGATCATATTCTACAGGTACCATCTTATATTCTGCCTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

356

Amino Acids

40.82

Weight (kDa)

9.46

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAZ PF02170 3 - 83 5.5e-10 PAZ domain
ArgoL2 PF16488 93 - 136 1.3e-13 Argonaute linker 2 domain
Piwi PF02171 179 - 348 2.6e-42 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 47, 144
Acc36I ACCTGC 2 cut(s) 172, 269
Acc65I GGTACC 1 cut(s) 1044
AccB1I GGYRCC 1 cut(s) 1044
AccBSI CCGCTC 1 cut(s) 446
AccI GTMKAC 1 cut(s) 70
AccII CGCG 1 cut(s) 516
AciI CCGC 4 cut(s) 444, 514, 516, 836
AclI AACGTT 1 cut(s) 680
AclWI GGATC 5 cut(s) 323, 609, 938, 951, 1037
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 2 cut(s) 588, 744
AcuI CTGAAG 2 cut(s) 272, 882
AfaI GTAC 3 cut(s) 212, 429, 1046
AfiI CCNNNNNNNGG 4 cut(s) 520, 806, 907, 953
AgsI TTSAA 7 cut(s) 200, 226, 383, 583, 685, 819, 931
AhdI GACNNNNNGTC 1 cut(s) 306
AjnI CCWGG 4 cut(s) 215, 519, 737, 805
AluBI AGCT 4 cut(s) 148, 386, 526, 532
AluI AGCT 4 cut(s) 148, 386, 526, 532
Alw26I GTCTC 2 cut(s) 226, 590
AlwI GGATC 5 cut(s) 323, 609, 938, 951, 1037
AoxI GGCC 5 cut(s) 468, 517, 607, 764, 857
ApaI GGGCCC 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 833
ApoI RAATTY 2 cut(s) 588, 744
Asp718I GGTACC 1 cut(s) 1044
AspS9I GGNCC 2 cut(s) 468, 469
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 4 cut(s) 268, 433, 587, 784
BaeGI GKGCMC 1 cut(s) 472
BamHI GGATCC 1 cut(s) 943
BanI GGYRCC 1 cut(s) 1044
BanII GRGCYC 1 cut(s) 472
BbvI GCAGC 1 cut(s) 845
BccI CCATC 4 cut(s) 779, 804, 909, 1056
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 4 cut(s) 217, 521, 739, 807
BclI TGATCA 1 cut(s) 975
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 2 cut(s) 226, 590
BfaI CTAG 1 cut(s) 1069
BfmI CTRYAG 1 cut(s) 1039
BfuAI ACCTGC 2 cut(s) 172, 269
BisI GCNGC 2 cut(s) 517, 834
BlsI GCNGC 2 cut(s) 518, 835
BmcAI AGTACT 1 cut(s) 429
Bme1390I CCNGG 5 cut(s) 217, 453, 521, 739, 807
BmeRI GACNNNNNGTC 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 468, 469
BmiI GGNNCC 3 cut(s) 470, 945, 1046
BmrFI CCNGG 5 cut(s) 217, 453, 521, 739, 807
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 1 cut(s) 718
BmuI ACTGGG 1 cut(s) 1020
BpmI CTGGAG 3 cut(s) 199, 491, 828
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 548, 834
BpuMI CCSGG 1 cut(s) 453
BsaJI CCNNGG 2 cut(s) 108, 514
Bsc4I CCNNNNNNNGG 4 cut(s) 520, 806, 907, 953
Bse1I ACTGG 2 cut(s) 425, 1015
BseBI CCWGG 4 cut(s) 217, 521, 739, 807
BseDI CCNNGG 2 cut(s) 108, 514
BseGI GGATG 4 cut(s) 448, 796, 802, 915
BseLI CCNNNNNNNGG 4 cut(s) 520, 806, 907, 953
BseMII CTCAG 2 cut(s) 71, 353
BseNI ACTGG 2 cut(s) 425, 1015
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 1 cut(s) 845
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 1 cut(s) 516
BshFI GGCC 5 cut(s) 470, 519, 609, 766, 859
BshNI GGYRCC 1 cut(s) 1044
BsiSI CCGG 1 cut(s) 453
BslFI GGGAC 1 cut(s) 970
BslI CCNNNNNNNGG 4 cut(s) 520, 806, 907, 953
BsmAI GTCTC 2 cut(s) 226, 590
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 970
BsnI GGCC 5 cut(s) 470, 519, 609, 766, 859
Bsp120I GGGCCC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 9 cut(s) 92, 328, 601, 687, 760, 943, 975, 1004, 1029
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 4 cut(s) 444, 514, 516, 836
BspANI GGCC 5 cut(s) 470, 519, 609, 766, 859
BspCNI CTCAG 2 cut(s) 70, 352
BspFNI CGCG 1 cut(s) 516
BspHI TCATGA 3 cut(s) 25, 274, 487
BspLI GGNNCC 3 cut(s) 470, 945, 1046
BspMI ACCTGC 2 cut(s) 172, 269
BspPI GGATC 5 cut(s) 323, 609, 938, 951, 1037
BspT107I GGYRCC 1 cut(s) 1044
BsrBI CCGCTC 1 cut(s) 446
BsrI ACTGG 2 cut(s) 425, 1015
BssECI CCNNGG 2 cut(s) 108, 514
BssMI GATC 9 cut(s) 92, 328, 601, 687, 760, 943, 975, 1004, 1029
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 4 cut(s) 217, 521, 739, 807
Bst4CI ACNGT 3 cut(s) 304, 663, 718
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 57, 339
BstDSI CCRYGG 2 cut(s) 108, 514
BstEII GGTNACC 1 cut(s) 256
BstF5I GGATG 4 cut(s) 448, 796, 802, 915
BstFNI CGCG 1 cut(s) 516
BstKTI GATC 9 cut(s) 95, 331, 604, 690, 763, 946, 978, 1007, 1032
BstMAI GTCTC 2 cut(s) 226, 590
BstMBI GATC 9 cut(s) 92, 328, 601, 687, 760, 943, 975, 1004, 1029
BstMWI GCNNNNNNNGC 3 cut(s) 154, 407, 842
BstNI CCWGG 4 cut(s) 217, 521, 739, 807
BstNSI RCATGY 2 cut(s) 161, 641
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 5 cut(s) 215, 451, 519, 737, 805
BstSFI CTRYAG 1 cut(s) 1039
BstSLI GKGCMC 1 cut(s) 472
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 845
BstX2I RGATCY 3 cut(s) 328, 601, 943
BstYI RGATCY 3 cut(s) 328, 601, 943
BsuRI GGCC 5 cut(s) 470, 519, 609, 766, 859
BtgI CCRYGG 2 cut(s) 108, 514
BtsCI GGATG 4 cut(s) 448, 796, 802, 915
BtsIMutI CAGTG 4 cut(s) 367, 494, 723, 763
BveI ACCTGC 2 cut(s) 172, 269
Cac8I GCNNGC 1 cut(s) 266
CciI TCATGA 3 cut(s) 25, 274, 487
Cfr13I GGNCC 2 cut(s) 468, 469
Cfr42I CCGCGG 1 cut(s) 517
CseI GACGC 1 cut(s) 257
Csp6I GTAC 3 cut(s) 211, 428, 1045
CviQI GTAC 3 cut(s) 211, 428, 1045
DdeI CTNAG 2 cut(s) 57, 339
DpnI GATC 9 cut(s) 94, 330, 603, 689, 762, 945, 977, 1006, 1031
DpnII GATC 9 cut(s) 92, 328, 601, 687, 760, 943, 975, 1004, 1029
DraI TTTAAA 1 cut(s) 646
DriI GACNNNNNGTC 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 517
Eam1105I GACNNNNNGTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 472
Eco57I CTGAAG 2 cut(s) 272, 882
Eco91I GGTNACC 1 cut(s) 256
EcoO109I RGGNCCY 2 cut(s) 468, 469
EcoO65I GGTNACC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 744
EcoRII CCWGG 4 cut(s) 215, 519, 737, 805
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 590
FaqI GGGAC 1 cut(s) 970
FauI CCCGC 1 cut(s) 521
FbaI TGATCA 1 cut(s) 975
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 517, 834
FokI GGATG 4 cut(s) 435, 783, 789, 902
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 2 cut(s) 517, 834
FspBI CTAG 1 cut(s) 1069
GluI GCNGC 2 cut(s) 517, 834
GsuI CTGGAG 3 cut(s) 199, 491, 828
HaeIII GGCC 5 cut(s) 470, 519, 609, 766, 859
HapII CCGG 1 cut(s) 453
HgaI GACGC 1 cut(s) 257
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 2 cut(s) 367, 815
HpaII CCGG 1 cut(s) 453
HphI GGTGA 4 cut(s) 268, 433, 587, 784
Hpy166II GTNNAC 2 cut(s) 16, 71
Hpy188III TCNNGA 8 cut(s) 26, 275, 298, 341, 419, 463, 488, 851
Hpy8I GTNNAC 2 cut(s) 16, 71
HpyAV CCTTC 4 cut(s) 194, 247, 691, 702
HpyCH4III ACNGT 3 cut(s) 304, 663, 718
HpyCH4IV ACGT 3 cut(s) 286, 680, 693
HpyCH4V TGCA 3 cut(s) 181, 401, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 407, 842
HpyF3I CTNAG 2 cut(s) 57, 339
HpySE526I ACGT 3 cut(s) 286, 680, 693
KpnI GGTACC 1 cut(s) 1048
Ksp22I TGATCA 1 cut(s) 975
KspI CCGCGG 1 cut(s) 517
Kzo9I GATC 9 cut(s) 92, 328, 601, 687, 760, 943, 975, 1004, 1029
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 1 cut(s) 845
LweI GCATC 1 cut(s) 718
MaeI CTAG 1 cut(s) 1069
MaeII ACGT 3 cut(s) 286, 680, 693
MaeIII GTNAC 5 cut(s) 256, 439, 676, 790, 865
MalI GATC 9 cut(s) 94, 330, 603, 689, 762, 945, 977, 1006, 1031
MbiI CCGCTC 1 cut(s) 446
MboI GATC 9 cut(s) 92, 328, 601, 687, 760, 943, 975, 1004, 1029
MboII GAAGA 3 cut(s) 338, 386, 697
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 3 cut(s) 328, 601, 943
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 4 cut(s) 97, 588, 744, 828
MnlI CCTC 6 cut(s) 106, 213, 282, 459, 805, 810
MseI TTAA 5 cut(s) 162, 354, 414, 629, 645
MspA1I CMGCKG 2 cut(s) 516, 836
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 5 cut(s) 217, 453, 521, 739, 807
MunI CAATTG 1 cut(s) 828
MvaI CCWGG 4 cut(s) 217, 521, 739, 807
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 3 cut(s) 154, 407, 842
NciI CCSGG 1 cut(s) 453
NcoI CCATGG 1 cut(s) 108
NdeII GATC 9 cut(s) 92, 328, 601, 687, 760, 943, 975, 1004, 1029
NlaIV GGNNCC 3 cut(s) 470, 945, 1046
NmeAIII GCCGAG 1 cut(s) 585
NmuCI GTSAC 3 cut(s) 256, 439, 790
NspI RCATGY 2 cut(s) 161, 641
PagI TCATGA 3 cut(s) 25, 274, 487
PfeI GAWTC 2 cut(s) 367, 815
PflFI GACNNNGTC 1 cut(s) 961
PfoI TCCNGGA 2 cut(s) 215, 805
PkrI GCNGC 2 cut(s) 518, 835
PsiI TTATAA 2 cut(s) 47, 144
Psp1406I AACGTT 1 cut(s) 680
Psp6I CCWGG 4 cut(s) 215, 519, 737, 805
PspEI GGTNACC 1 cut(s) 256
PspGI CCWGG 4 cut(s) 215, 519, 737, 805
PspN4I GGNNCC 3 cut(s) 470, 945, 1046
PspOMI GGGCCC 1 cut(s) 468
PspPI GGNCC 2 cut(s) 468, 469
PsuI RGATCY 3 cut(s) 328, 601, 943
PsyI GACNNNGTC 1 cut(s) 961
RsaI GTAC 3 cut(s) 212, 429, 1046
RsaNI GTAC 3 cut(s) 211, 428, 1045
SacII CCGCGG 1 cut(s) 517
SaqAI TTAA 5 cut(s) 162, 354, 414, 629, 645
SatI GCNGC 2 cut(s) 517, 834
Sau3AI GATC 9 cut(s) 92, 328, 601, 687, 760, 943, 975, 1004, 1029
Sau96I GGNCC 2 cut(s) 468, 469
ScaI AGTACT 1 cut(s) 429
ScrFI CCNGG 5 cut(s) 217, 453, 521, 739, 807
SduI GDGCHC 1 cut(s) 472
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 1039
Sfr303I CCGCGG 1 cut(s) 517
SgrBI CCGCGG 1 cut(s) 517
SmlI CTYRAG 2 cut(s) 527, 849
SmoI CTYRAG 2 cut(s) 527, 849
Sse9I AATT 4 cut(s) 97, 588, 744, 828
SsiI CCGC 4 cut(s) 444, 514, 516, 836
SspMI CTAG 1 cut(s) 1069
StyD4I CCNGG 5 cut(s) 215, 451, 519, 737, 805
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 304, 663, 718
TaiI ACGT 3 cut(s) 289, 683, 696
TaqI TCGA 2 cut(s) 462, 904
TasI AATT 4 cut(s) 97, 588, 744, 828
TatI WGTACW 1 cut(s) 427
TauI GCSGC 1 cut(s) 519
TfiI GAWTC 2 cut(s) 367, 815
Tru1I TTAA 5 cut(s) 162, 354, 414, 629, 645
Tru9I TTAA 5 cut(s) 162, 354, 414, 629, 645
TscAI CASTG 4 cut(s) 367, 501, 723, 763
TseFI GTSAC 3 cut(s) 256, 439, 790
TseI GCWGC 1 cut(s) 833
Tsp45I GTSAC 3 cut(s) 256, 439, 790
TspDTI ATGAA 8 cut(s) 14, 17, 31, 42, 291, 339, 476, 504
TspGWI ACGGA 4 cut(s) 614, 813, 989, 1042
TspRI CASTG 4 cut(s) 367, 501, 723, 763
Tth111I GACNNNGTC 1 cut(s) 961
XapI RAATTY 2 cut(s) 588, 744
XceI RCATGY 2 cut(s) 161, 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 803
XmiI GTMKAC 1 cut(s) 70
XspI CTAG 1 cut(s) 1069
ZrmI AGTACT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.