Rh7AG291500

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001348
Physical Location & Seq
Reverse (-)
31630828 .. 31673791
42964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG291500.1

Sequence Viewer

Length: 987 bp
ATGGAGGTCTGTAAAATTGTTAAGGGACAAAGGTACTCAAAGATGTTGAATAAGATACAGAAAATTGATTTGCTCAGGGTGACAGCTCAGCGCCCTTCTGAAAAGGAACGTGACATTATACAGATAGTACGTCATAATGCCTATGATCAAGATCCTTATGCAAAGGAGTTCGGAATTAAAATTAGTGAGAATATGGCTCAGGTTGAAGCTCGTATTCTTCCTGCACCACGGCTTAAATACCATAATACTGGAAAGCAAAAGGATTTCCTGCCCAGACTTGGACAGTGGAGCATGATAAATAAGCAAATGGTAAATGGAGGAAAAGTTGTGGCTTCTCAAGACTGGCCTCAAATTACCACGTATGCTGGTTTGGTTTGTGCTCAAGCCCATCGTCAGGAGCTTATCCAAGATTTCTTTAAACAGTGGCAAGATCCAGTAGAAGGAACAATGTCTGGTGGAATGATGAACGGGAAATGTGTCAGCGAGGGGCAGTTCTACCAAGTTCTACTGTACGAACTTGATGCAATTCGTAAGATTCCTCTTACACATGCTATGTTGGCCTGCGCTTTACTGGAGTCAAATTATCAGTCTCCTGTGACTTTTGTTGTTGTTCAAAAGAGTCATCGTATAAGATTATTTGCCAACAACCATGGGGATCGCCGTGCAGTTGACAGGAGTGGGAACATATTACCTGACATGCAGGAATTTAGGCAAGAATCATTTCCTTCCCTTGTGTTTATATGTTTAGTGAGATATGCAAGGTGTACACGCTCCGTTTCAATTGTGCCTCCTGCTTATTATGCTCATCTCGCCGCAATCCGTGCTCGTTTCTATCTGGAGCCCGTGACTTCAGACAGTGGTTCAATGTCAAGTGGTATGGGTGGTTCTGGTGGACGATGGAACTCTCGAGCACCGGGTCCAAAAGCTGCTGTGAAACTTTTGCCTGCGTTGAAGGAGAATGTGAAAAAGGTCATGTTCTACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

328

Amino Acids

37.16

Weight (kDa)

9.62

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoL2 PF16488 35 - 80 4.6e-18 Argonaute linker 2 domain
Piwi PF02171 102 - 229 5e-13 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 813
AclWI GGATC 3 cut(s) 146, 425, 663
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 1 cut(s) 834
AfaI GTAC 4 cut(s) 35, 129, 512, 766
AfiI CCNNNNNNNGG 3 cut(s) 278, 394, 440
AgsI TTSAA 6 cut(s) 49, 206, 614, 780, 864, 952
AluBI AGCT 4 cut(s) 86, 209, 400, 926
AluI AGCT 4 cut(s) 86, 209, 400, 926
Alw21I GWGCWC 3 cut(s) 382, 826, 913
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 3 cut(s) 146, 425, 663
Ama87I CYCGRG 1 cut(s) 906
AoxI GGCC 2 cut(s) 344, 558
ApeKI GCWGC 1 cut(s) 926
ApoI RAATTY 1 cut(s) 704
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 2 cut(s) 93, 566
AspS9I GGNCC 1 cut(s) 917
AsuC2I CCSGG 1 cut(s) 915
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 906
AvaII GGWCC 1 cut(s) 917
BanII GRGCYC 1 cut(s) 843
Bbv12I GWGCWC 3 cut(s) 382, 826, 913
BbvI GCAGC 1 cut(s) 913
BccI CCATC 2 cut(s) 396, 891
BceAI ACGGC 2 cut(s) 245, 645
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 915
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 1 cut(s) 985
BfoI RGCGCY 1 cut(s) 94
BisI GCNGC 2 cut(s) 813, 927
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 2 cut(s) 814, 928
Bme1390I CCNGG 1 cut(s) 915
Bme18I GGWCC 1 cut(s) 917
BmeT110I CYCGRG 1 cut(s) 906
BmgT120I GGNCC 1 cut(s) 917
BmiI GGNNCC 2 cut(s) 840, 918
BmrFI CCNGG 1 cut(s) 915
BmsI GCATC 1 cut(s) 511
BpmI CTGGAG 2 cut(s) 593, 857
Bpu10I CCTNAGC 2 cut(s) 74, 198
Bpu1102I GCTNAGC 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 321, 366
BpuMI CCSGG 1 cut(s) 915
BsaAI YACGTR 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 227, 649
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 394, 440
Bse1I ACTGG 4 cut(s) 253, 347, 434, 576
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 227, 649
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 3 cut(s) 278, 394, 440
BseMII CTCAG 3 cut(s) 88, 101, 212
BseNI ACTGG 4 cut(s) 253, 347, 434, 576
BseXI GCAGC 1 cut(s) 913
BsgI GTGCAG 2 cut(s) 207, 684
BshFI GGCC 2 cut(s) 346, 560
BsiHKAI GWGCWC 3 cut(s) 382, 826, 913
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 1 cut(s) 914
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 3 cut(s) 278, 394, 440
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 2 cut(s) 346, 560
BsoBI CYCGRG 1 cut(s) 906
Bsp1286I GDGCHC 4 cut(s) 382, 826, 843, 913
Bsp1407I TGTACA 1 cut(s) 764
Bsp143I GATC 4 cut(s) 145, 151, 430, 655
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 1 cut(s) 813
BspANI GGCC 2 cut(s) 346, 560
BspCNI CTCAG 3 cut(s) 87, 100, 211
BspLI GGNNCC 2 cut(s) 840, 918
BspPI GGATC 3 cut(s) 146, 425, 663
BsrGI TGTACA 1 cut(s) 764
BsrI ACTGG 4 cut(s) 253, 347, 434, 576
BssECI CCNNGG 2 cut(s) 227, 649
BssMI GATC 4 cut(s) 145, 151, 430, 655
BssT1I CCWWGG 1 cut(s) 649
Bst4CI ACNGT 4 cut(s) 285, 423, 510, 857
BstAPI GCANNNNNTGC 1 cut(s) 821
BstAUI TGTACA 1 cut(s) 764
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 562, 945
BstDEI CTNAG 3 cut(s) 74, 87, 198
BstDSI CCRYGG 2 cut(s) 227, 649
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 2 cut(s) 93, 566
BstKTI GATC 4 cut(s) 148, 154, 433, 658
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 4 cut(s) 145, 151, 430, 655
BstMWI GCNNNNNNNGC 4 cut(s) 557, 800, 809, 821
BstNSI RCATGY 2 cut(s) 551, 700
BstSCI CCNGG 1 cut(s) 913
BstV1I GCAGC 1 cut(s) 913
BstX2I RGATCY 2 cut(s) 151, 430
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 2 cut(s) 151, 430
BsuRI GGCC 2 cut(s) 346, 560
BtgI CCRYGG 2 cut(s) 227, 649
BtsIMutI CAGTG 3 cut(s) 290, 428, 862
Cac8I GCNNGC 2 cut(s) 562, 945
CfoI GCGC 2 cut(s) 93, 566
Cfr13I GGNCC 1 cut(s) 917
Csp6I GTAC 4 cut(s) 34, 128, 511, 765
CviAII CATG 5 cut(s) 292, 548, 650, 697, 973
CviQI GTAC 4 cut(s) 34, 128, 511, 765
DdeI CTNAG 3 cut(s) 74, 87, 198
DpnI GATC 4 cut(s) 147, 153, 432, 657
DpnII GATC 4 cut(s) 145, 151, 430, 655
DraI TTTAAA 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 1 cut(s) 917
Eco57I CTGAAG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 906
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 5 cut(s) 295, 551, 653, 700, 976
FaqI GGGAC 1 cut(s) 39
FatI CATG 5 cut(s) 291, 547, 649, 696, 972
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 813, 927
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 2 cut(s) 813, 927
FspBI CTAG 1 cut(s) 985
GlaI GCGC 2 cut(s) 92, 565
GluI GCNGC 2 cut(s) 813, 927
GsuI CTGGAG 2 cut(s) 593, 857
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 2 cut(s) 346, 560
HapII CCGG 1 cut(s) 914
HhaI GCGC 2 cut(s) 93, 566
Hin1II CATG 5 cut(s) 295, 551, 653, 700, 976
Hin6I GCGC 2 cut(s) 91, 564
HinP1I GCGC 2 cut(s) 91, 564
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 4 cut(s) 535, 575, 619, 716
HpaII CCGG 1 cut(s) 914
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 4 cut(s) 670, 765, 767, 893
Hpy188I TCNGA 3 cut(s) 100, 173, 853
Hpy188III TCNNGA 5 cut(s) 149, 338, 395, 836, 906
Hpy8I GTNNAC 4 cut(s) 670, 765, 767, 893
HpyAV CCTTC 4 cut(s) 105, 434, 735, 946
HpyCH4III ACNGT 4 cut(s) 285, 423, 510, 857
HpyCH4IV ACGT 3 cut(s) 109, 130, 359
HpyCH4V TGCA 6 cut(s) 161, 224, 524, 665, 700, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 557, 800, 809, 821
HpyF3I CTNAG 3 cut(s) 74, 87, 198
HpySE526I ACGT 3 cut(s) 109, 130, 359
Hsp92II CATG 5 cut(s) 295, 551, 653, 700, 976
HspAI GCGC 2 cut(s) 91, 564
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 145, 151, 430, 655
LmnI GCTCC 4 cut(s) 288, 397, 776, 838
Lsp1109I GCAGC 1 cut(s) 913
LweI GCATC 1 cut(s) 511
MaeI CTAG 1 cut(s) 985
MaeII ACGT 3 cut(s) 109, 130, 359
MaeIII GTNAC 4 cut(s) 79, 110, 595, 844
MalI GATC 4 cut(s) 147, 153, 432, 657
MboI GATC 4 cut(s) 145, 151, 430, 655
MboII GAAGA 1 cut(s) 209
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 2 cut(s) 151, 430
MhlI GDGCHC 4 cut(s) 382, 826, 843, 913
MluCI AATT 9 cut(s) 15, 63, 174, 180, 351, 525, 580, 704, 780
MlyI GAGTC 2 cut(s) 584, 628
MnlI CCTC 5 cut(s) 311, 357, 478, 549, 798
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 4 cut(s) 21, 177, 234, 417
MspI CCGG 1 cut(s) 914
MspR9I CCNGG 1 cut(s) 915
MunI CAATTG 1 cut(s) 780
MwoI GCNNNNNNNGC 4 cut(s) 557, 800, 809, 821
NciI CCSGG 1 cut(s) 915
NcoI CCATGG 1 cut(s) 649
NdeII GATC 4 cut(s) 145, 151, 430, 655
NlaIII CATG 5 cut(s) 295, 551, 653, 700, 976
NlaIV GGNNCC 2 cut(s) 840, 918
NmuCI GTSAC 4 cut(s) 79, 110, 595, 844
NspI RCATGY 2 cut(s) 551, 700
PaeR7I CTCGAG 1 cut(s) 906
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 2 cut(s) 535, 716
PkrI GCNGC 2 cut(s) 814, 928
PleI GAGTC 2 cut(s) 583, 627
PpsI GAGTC 2 cut(s) 583, 627
Ppu21I YACGTR 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 840, 918
PspPI GGNCC 1 cut(s) 917
PsrI GAACNNNNNNTAC 2 cut(s) 868, 900
PsuI RGATCY 2 cut(s) 151, 430
RsaI GTAC 4 cut(s) 35, 129, 512, 766
RsaNI GTAC 4 cut(s) 34, 128, 511, 765
SaqAI TTAA 4 cut(s) 21, 177, 234, 417
SatI GCNGC 2 cut(s) 813, 927
Sau3AI GATC 4 cut(s) 145, 151, 430, 655
Sau96I GGNCC 1 cut(s) 917
SchI GAGTC 2 cut(s) 584, 628
ScrFI CCNGG 1 cut(s) 915
SduI GDGCHC 4 cut(s) 382, 826, 843, 913
SfaNI GCATC 1 cut(s) 511
Sfr274I CTCGAG 1 cut(s) 906
SinI GGWCC 1 cut(s) 917
SlaI CTCGAG 1 cut(s) 906
SmlI CTYRAG 3 cut(s) 336, 381, 906
SmoI CTYRAG 3 cut(s) 336, 381, 906
Sse9I AATT 9 cut(s) 15, 63, 174, 180, 351, 525, 580, 704, 780
SsiI CCGC 1 cut(s) 813
SspMI CTAG 1 cut(s) 985
StyD4I CCNGG 1 cut(s) 913
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 4 cut(s) 285, 423, 510, 857
TaiI ACGT 3 cut(s) 112, 133, 362
TaqI TCGA 1 cut(s) 907
TasI AATT 9 cut(s) 15, 63, 174, 180, 351, 525, 580, 704, 780
TatI WGTACW 1 cut(s) 764
TauI GCSGC 1 cut(s) 815
TfiI GAWTC 2 cut(s) 535, 716
Tru1I TTAA 4 cut(s) 21, 177, 234, 417
Tru9I TTAA 4 cut(s) 21, 177, 234, 417
TscAI CASTG 3 cut(s) 290, 428, 862
TseFI GTSAC 4 cut(s) 79, 110, 595, 844
TseI GCWGC 1 cut(s) 926
Tsp45I GTSAC 4 cut(s) 79, 110, 595, 844
TspDTI ATGAA 1 cut(s) 479
TspGWI ACGGA 2 cut(s) 763, 809
TspRI CASTG 3 cut(s) 290, 428, 862
VpaK11BI GGWCC 1 cut(s) 917
XapI RAATTY 1 cut(s) 704
XceI RCATGY 2 cut(s) 551, 700
XhoI CTCGAG 1 cut(s) 906
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.