Rmu_sc0000898.1_g000080

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000898.1
OG0001348
Physical Location & Seq
Forward (+)
357950 .. 360305
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000898.1_g000080.1.cds

Sequence Viewer

Length: 645 bp
atggtgggcaggtatgggttcgtggaggctaggagaaaacttggatttgagggaggcggtgattttggtagccggagatcgaagaagaagaagattggatcgaagaagaaaaagaagaagaaggaggagggcggagagagaggggatcgaatatggtcgtggttacttgttgatgcaatctccagacgtattcccttggttagcgaccgccctacaataattttcggtgctggtatgatgcatcctcatccaggggaggattcaagcccatcaattgcagctgactggcctcaaattaccacgtatgctggtttggtttgtgctcaagcccatcgtcaggagcttatccaagatttctttaaacagtggcaagatccagtagaaggaacaatgtccggtggaatgatgaaatatgcaaggtgtacacgctccgtttcaattgtgcctcctgcttattatgctcatctcgccgcaatccgtgctcgtttctatctggagcccgtgacttcagacagtggttcaatgtcaagtggtatgggtggttctggtggaggacggaactctcgagcaccgggtccaaaagctgctgtgaagcttttgcctgcattgaaggagaatgtgaaaaacgtcatgttctactgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN Gly-rich_Ago1 PAZ Piwi

Protein Analysis

214

Amino Acids

23.49

Weight (kDa)

9.97

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 57, 132, 208, 471
AclWI GGATC 3 cut(s) 106, 153, 368
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 3 cut(s) 251, 337, 383
AgsI TTSAA 4 cut(s) 264, 438, 522, 610
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 281, 343, 584, 595
AluI AGCT 4 cut(s) 281, 343, 584, 595
Alw21I GWGCWC 3 cut(s) 325, 484, 571
AlwI GGATC 3 cut(s) 106, 153, 368
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 278, 584
AspS9I GGNCC 1 cut(s) 575
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 3 cut(s) 325, 484, 571
BbvI GCAGC 2 cut(s) 290, 571
BccI CCATC 2 cut(s) 277, 339
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 573
BfaI CTAG 2 cut(s) 30, 643
BisI GCNGC 3 cut(s) 279, 471, 585
BlsI GCNGC 3 cut(s) 280, 472, 586
Bme1390I CCNGG 2 cut(s) 252, 573
Bme18I GGWCC 1 cut(s) 575
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 498, 576
BmrFI CCNGG 2 cut(s) 252, 573
BmsI GCATC 3 cut(s) 163, 228, 250
BpmI CTGGAG 2 cut(s) 166, 515
BpuEI CTTGAG 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 573
BsaAI YACGTR 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 195, 251
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 337, 383
Bse1I ACTGG 2 cut(s) 290, 377
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 195, 251
BseGI GGATG 2 cut(s) 241, 247
BseLI CCNNNNNNNGG 3 cut(s) 251, 337, 383
BseNI ACTGG 2 cut(s) 290, 377
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 290, 571
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 3 cut(s) 325, 484, 571
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 3 cut(s) 73, 396, 572
BslI CCNNNNNNNGG 3 cut(s) 251, 337, 383
BsnI GGCC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 4 cut(s) 325, 484, 501, 571
Bsp1407I TGTACA 1 cut(s) 422
Bsp143I GATC 4 cut(s) 77, 98, 145, 373
BspACI CCGC 4 cut(s) 57, 132, 208, 471
BspANI GGCC 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 498, 576
BspPI GGATC 3 cut(s) 106, 153, 368
BsrGI TGTACA 1 cut(s) 422
BsrI ACTGG 2 cut(s) 290, 377
BssECI CCNNGG 2 cut(s) 195, 251
BssMI GATC 4 cut(s) 77, 98, 145, 373
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 366, 515
BstAPI GCANNNNNTGC 1 cut(s) 479
BstAUI TGTACA 1 cut(s) 422
BstBAI YACGTR 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 603
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 241, 247
BstKTI GATC 4 cut(s) 80, 101, 148, 376
BstMBI GATC 4 cut(s) 77, 98, 145, 373
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 3 cut(s) 458, 467, 479
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 250, 571
BstV1I GCAGC 2 cut(s) 290, 571
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 241, 247
BtsIMutI CAGTG 2 cut(s) 371, 520
Cac8I GCNNGC 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 631
CviQI GTAC 1 cut(s) 423
DpnI GATC 4 cut(s) 79, 100, 147, 375
DpnII GATC 4 cut(s) 77, 98, 145, 373
DraI TTTAAA 1 cut(s) 361
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 575
Eco57I CTGAAG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 564
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 634
FaiI YATR 8 cut(s) 15, 154, 236, 306, 414, 459, 536, 632
FatI CATG 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 279, 471, 585
FokI GGATG 2 cut(s) 228, 234
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 279, 471, 585
FspBI CTAG 2 cut(s) 30, 643
GluI GCNGC 3 cut(s) 279, 471, 585
GsuI CTGGAG 2 cut(s) 166, 515
HaeIII GGCC 1 cut(s) 289
HapII CCGG 3 cut(s) 73, 396, 572
Hin1II CATG 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 1 cut(s) 260
HpaII CCGG 3 cut(s) 73, 396, 572
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 423, 425
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 4 cut(s) 183, 338, 494, 564
Hpy8I GTNNAC 2 cut(s) 423, 425
HpyAV CCTTC 3 cut(s) 115, 377, 604
HpyCH4III ACNGT 2 cut(s) 366, 515
HpyCH4IV ACGT 3 cut(s) 187, 302, 627
HpyCH4V TGCA 5 cut(s) 176, 241, 278, 416, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 467, 479
HpySE526I ACGT 3 cut(s) 187, 302, 627
Hsp92II CATG 1 cut(s) 634
Kzo9I GATC 4 cut(s) 77, 98, 145, 373
LmnI GCTCC 3 cut(s) 340, 434, 496
Lsp1109I GCAGC 2 cut(s) 290, 571
LweI GCATC 3 cut(s) 163, 228, 250
MaeI CTAG 2 cut(s) 30, 643
MaeII ACGT 3 cut(s) 187, 302, 627
MaeIII GTNAC 2 cut(s) 162, 502
MalI GATC 4 cut(s) 79, 100, 147, 375
MboI GATC 4 cut(s) 77, 98, 145, 373
MboII GAAGA 8 cut(s) 94, 97, 100, 103, 115, 118, 127, 130
MfeI CAATTG 2 cut(s) 273, 438
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 4 cut(s) 325, 484, 501, 571
MluCI AATT 4 cut(s) 219, 273, 294, 438
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 3 cut(s) 73, 396, 572
MspR9I CCNGG 2 cut(s) 252, 573
MunI CAATTG 2 cut(s) 273, 438
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 3 cut(s) 458, 467, 479
NciI CCSGG 1 cut(s) 573
NdeII GATC 4 cut(s) 77, 98, 145, 373
NlaIII CATG 1 cut(s) 634
NlaIV GGNNCC 2 cut(s) 498, 576
NmuCI GTSAC 1 cut(s) 502
NsiI ATGCAT 1 cut(s) 243
PaeR7I CTCGAG 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 562
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 3 cut(s) 280, 472, 586
Ppu21I YACGTR 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 498, 576
PspPI GGNCC 1 cut(s) 575
PsrI GAACNNNNNNTAC 2 cut(s) 526, 558
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 279, 471, 585
Sau3AI GATC 4 cut(s) 77, 98, 145, 373
Sau96I GGNCC 1 cut(s) 575
ScrFI CCNGG 2 cut(s) 252, 573
SduI GDGCHC 4 cut(s) 325, 484, 501, 571
SetI ASST 9 cut(s) 14, 190, 283, 305, 345, 422, 586, 597, 630
SfaNI GCATC 3 cut(s) 163, 228, 250
Sfr274I CTCGAG 1 cut(s) 564
SinI GGWCC 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 324, 564
SmoI CTYRAG 2 cut(s) 324, 564
Sse9I AATT 4 cut(s) 219, 273, 294, 438
SsiI CCGC 4 cut(s) 57, 132, 208, 471
SspMI CTAG 2 cut(s) 30, 643
StyD4I CCNGG 2 cut(s) 250, 571
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 366, 515
TaiI ACGT 3 cut(s) 190, 305, 630
TaqI TCGA 4 cut(s) 80, 101, 148, 565
TasI AATT 4 cut(s) 219, 273, 294, 438
TatI WGTACW 1 cut(s) 422
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 2 cut(s) 371, 520
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 2 cut(s) 278, 584
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 1 cut(s) 422
TspGWI ACGGA 3 cut(s) 421, 467, 571
TspRI CASTG 2 cut(s) 371, 520
VpaK11BI GGWCC 1 cut(s) 575
XagI CCTNNNNNAGG 1 cut(s) 249
XhoI CTCGAG 1 cut(s) 564
XspI CTAG 2 cut(s) 30, 643
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.