Rorug06G0405800

Belongs to the argonaute family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
54954929 .. 54956163
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0405800.1

Sequence Viewer

Length: 315 bp
ATGTCGTCCTCCTCCCACAAGTTGTCAAAGACCAAATCCTCCGTGCAAAATGGAGTAGTGAGCATCAGCAGGATCGATCTGAGTGAAAAGCATGATGAAGAAACTTATGACAGCAACAACGTGAGCACCCTGCTGCATCTGAAACCCTCCCACACCTCAGAAACCCTAGACAAAGAGGTGGTTCTGCGGCGGATCCAACAACGCAAGCGAGTCGACAAACTGCGTGCTGCTCTTCAATCCCTTCTCACCTCTCCGGTCTTGCCGTCAGCCCACGAAAAGAAGAAGTGGGCCGATGATGCCTTTTCAGCCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

104

Amino Acids

11.65

Weight (kDa)

9.52

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AciI CCGC 2 cut(s) 187, 190
AclWI GGATC 3 cut(s) 80, 187, 200
AgsI TTSAA 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 128
AlwI GGATC 3 cut(s) 80, 187, 200
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 133, 227
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 238
BamHI GGATCC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 120, 214
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BfaI CTAG 2 cut(s) 167, 313
BisI GCNGC 3 cut(s) 134, 188, 228
BlsI GCNGC 3 cut(s) 135, 189, 229
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 194
BmsI GCATC 3 cut(s) 72, 145, 286
Bsa29I ATCGAT 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 253
BseCI ATCGAT 1 cut(s) 75
BseMII CTCAG 2 cut(s) 71, 171
BseXI GCAGC 2 cut(s) 120, 214
BshFI GGCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 72, 76, 192
BspACI CCGC 2 cut(s) 187, 190
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 72, 170
BspDI ATCGAT 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 3 cut(s) 80, 187, 200
BspQI GCTCTTC 1 cut(s) 237
BssMI GATC 3 cut(s) 72, 76, 192
Bst6I CTCTTC 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 206, 225
BstDEI CTNAG 2 cut(s) 80, 157
BstKTI GATC 3 cut(s) 75, 79, 195
BstMBI GATC 3 cut(s) 72, 76, 192
BstMWI GCNNNNNNNGC 2 cut(s) 296, 305
BstV1I GCAGC 2 cut(s) 120, 214
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 206, 225
Cfr13I GGNCC 1 cut(s) 288
ClaI ATCGAT 1 cut(s) 75
CviAII CATG 1 cut(s) 92
CviJI RGCY 3 cut(s) 269, 290, 308
CviKI_1 RGCY 3 cut(s) 269, 290, 308
DdeI CTNAG 2 cut(s) 80, 157
DpnI GATC 3 cut(s) 74, 78, 194
DpnII GATC 3 cut(s) 72, 76, 192
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 205
FaeI CATG 1 cut(s) 95
FaiI YATR 2 cut(s) 93, 108
FatI CATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 134, 188, 228
Fsp4HI GCNGC 3 cut(s) 134, 188, 228
FspBI CTAG 2 cut(s) 167, 313
GluI GCNGC 3 cut(s) 134, 188, 228
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 254
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 1 cut(s) 210
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 81, 141, 160
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 46, 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 305
HpyF3I CTNAG 2 cut(s) 80, 157
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 3 cut(s) 72, 76, 192
LguI GCTCTTC 1 cut(s) 237
LpnPI CCDG 3 cut(s) 55, 143, 267
Lsp1109I GCAGC 2 cut(s) 120, 214
LweI GCATC 3 cut(s) 72, 145, 286
MaeI CTAG 2 cut(s) 167, 313
MaeII ACGT 1 cut(s) 120
MalI GATC 3 cut(s) 74, 78, 194
MboI GATC 3 cut(s) 72, 76, 192
MboII GAAGA 3 cut(s) 110, 224, 292
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 7 cut(s) 19, 22, 49, 157, 166, 169, 259
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 296, 305
NdeII GATC 3 cut(s) 72, 76, 192
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 237
PkrI GCNGC 3 cut(s) 135, 189, 229
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 288
PsuI RGATCY 1 cut(s) 192
SalI GTCGAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 237
SatI GCNGC 3 cut(s) 134, 188, 228
Sau3AI GATC 3 cut(s) 72, 76, 192
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 219
SduI GDGCHC 1 cut(s) 128
SetI ASST 4 cut(s) 123, 158, 180, 251
SfaNI GCATC 3 cut(s) 72, 145, 286
SsiI CCGC 2 cut(s) 187, 190
SspMI CTAG 2 cut(s) 167, 313
TaiI ACGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 75, 213
TauI GCSGC 1 cut(s) 190
TseI GCWGC 2 cut(s) 133, 227
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 167, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.