Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

19132221 .. 19135630

Gene Structure 3410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATGACCTACATGGAAGCAATGCTCGAATGCACATTAGAGAAGCTCAAGATCCAATGCATGTGCAATTTGAACATCATGCTTTGCATCACATCCACAATGGAAGCGGTATGGTTGATGACCAGGCTGATGATGGCAATGCTGGTGGGATGAGTGAGGGTGTGGAAACAGACATTCCTTCTCACCCTGGAAATGTAACTGACAATCGTGGTGAAGTGGTCGACCGTGGTAGTGAACAAGGAGATCAGTTAACATTGTCTTTTCAGGGCCAAGTCTACGTTTTTGACAGTGTCTTGCCTGAGAAGGTTCAAGCTGTGCTTCTATTATTGGGTGGTCGTGAATTACCTCAGGCAGCCCCTCCTGGCCTAGGATCACCTCATCAGAACAACAGAGTATCGAGTTTACCTGGTACTCCTCAAAGGTTTAGTATTCCGCAGCGATTAGCTTCTTTGGTCAGATTTCGAGAGAAACGGAAAGGAAGGAATTTTGATAAGAAGATTCGGTATACAGTCCGCAAGGAGGTAGCTTTGAGGATGCAACGCAATAAAGGTCAGTTCACATCTGCCAAGTCAAACAATGATGAAGCTGCATCTGCTGGATCTAGCTGGGGGTCGAATCAAACCTGGGCCATAGAAAGTAGTGAGGCTCAGCATCAAGAGATCTCATGTCGGCACTGTGGAATTGGCGAGAAGTCAACTCCAATGATGCGACGTGGACCTGCCGGGCCAAGAACACTTTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTGCTTTTAGGGACTTATCCAAAGCCTCTCCTCAAACAGCCCAGAATCTTCCTTTAAATAAGAATGAAGATGCAAATCTTGAGACTGATCATCAAATAATGATAACAGTGGCCAATGACATAAGCAACTCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

302

Amino Acids

33.13

Weight (kDa)

6.67

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	79 - 111	3.8e-11	tify domain
Jas_motif	PF09425	146 - 169	6.8e-07	Jas motif
CCT	PF06203	147 - 189	3.9e-15	CCT motif
GATA	PF00320	223 - 258	1.3e-11	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	727
AccI	GTMKAC	3 cut(s)	222, 276, 506
AciI	CCGC	3 cut(s)	108, 434, 514
AclWI	GGATC	3 cut(s)	47, 379, 607
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	1 cut(s)	484
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	368, 520
AgsI	TTSAA	2 cut(s)	74, 311
AjiI	CACGTC	1 cut(s)	713
AjnI	CCWGG	5 cut(s)	123, 187, 361, 406, 623
AluBI	AGCT	6 cut(s)	47, 314, 446, 527, 587, 606
AluI	AGCT	6 cut(s)	47, 314, 446, 527, 587, 606
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	3 cut(s)	47, 379, 607
AoxI	GGCC	5 cut(s)	268, 364, 627, 725, 882
ApeKI	GCWGC	3 cut(s)	353, 436, 587
ApoI	RAATTY	1 cut(s)	484
AspA2I	CCTAGG	1 cut(s)	367
AspS9I	GGNCC	4 cut(s)	268, 627, 716, 725
AsuC2I	CCSGG	1 cut(s)	724
AsuHPI	GGTGA	3 cut(s)	176, 224, 366
AvaII	GGWCC	1 cut(s)	716
AvrII	CCTAGG	1 cut(s)	367
AxyI	CCTNAGG	1 cut(s)	348
BalI	TGGCCA	1 cut(s)	884
BbvI	GCAGC	3 cut(s)	365, 448, 574
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	5 cut(s)	125, 189, 363, 408, 625
BclI	TGATCA	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	2 cut(s)	368, 603
BfuAI	ACCTGC	1 cut(s)	727
BglII	AGATCT	1 cut(s)	660
BisI	GCNGC	3 cut(s)	354, 437, 588
BlnI	CCTAGG	1 cut(s)	367
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	3 cut(s)	355, 438, 589
Bme1390I	CCNGG	6 cut(s)	125, 189, 363, 408, 625, 724
Bme18I	GGWCC	1 cut(s)	716
BmgBI	CACGTC	1 cut(s)	713
BmgT120I	GGNCC	4 cut(s)	268, 627, 716, 725
BmrFI	CCNGG	6 cut(s)	125, 189, 363, 408, 625, 724
BmsI	GCATC	6 cut(s)	97, 525, 599, 661, 696, 832
Bpu1102I	GCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	33, 872
BpuMI	CCSGG	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	846
BsaJI	CCNNGG	4 cut(s)	187, 226, 367, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 520
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	3 cut(s)	28, 145, 748
Bse8I	GATNNNNATC	1 cut(s)	846
BseBI	CCWGG	5 cut(s)	125, 189, 363, 408, 625
BseDI	CCNNGG	4 cut(s)	187, 226, 367, 624
BseGI	GGATG	4 cut(s)	10, 93, 156, 540
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	2 cut(s)	368, 520
BseMI	GCAATG	3 cut(s)	28, 145, 748
BseMII	CTCAG	3 cut(s)	291, 362, 662
BseRI	GAGGAG	2 cut(s)	405, 792
BseXI	GCAGC	3 cut(s)	365, 448, 574
BseYI	CCCAGC	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	5 cut(s)	270, 366, 629, 727, 884
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	2 cut(s)	368, 520
BsmAI	GTCTC	1 cut(s)	848
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	5 cut(s)	270, 366, 629, 727, 884
Bsp143I	GATC	6 cut(s)	52, 244, 371, 599, 660, 859
Bsp1720I	GCTNAGC	1 cut(s)	648
BspACI	CCGC	3 cut(s)	108, 434, 514
BspANI	GGCC	5 cut(s)	270, 366, 629, 727, 884
BspCNI	CTCAG	3 cut(s)	292, 361, 661
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	3 cut(s)	47, 379, 607
BsrDI	GCAATG	3 cut(s)	28, 145, 748
BssECI	CCNNGG	4 cut(s)	187, 226, 367, 624
BssMI	GATC	6 cut(s)	52, 244, 371, 599, 660, 859
BssNAI	GTATAC	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	367
Bst1107I	GTATAC	1 cut(s)	507
Bst2UI	CCWGG	5 cut(s)	125, 189, 363, 408, 625
Bst4CI	ACNGT	6 cut(s)	227, 290, 511, 677, 880, 906
BstDEI	CTNAG	3 cut(s)	300, 348, 648
BstDSI	CCRYGG	1 cut(s)	226
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	4 cut(s)	10, 93, 156, 540
BstKTI	GATC	6 cut(s)	55, 247, 374, 602, 663, 862
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	6 cut(s)	52, 244, 371, 599, 660, 859
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	5 cut(s)	125, 189, 363, 408, 625
BstNSI	RCATGY	2 cut(s)	65, 750
BstSCI	CCNGG	6 cut(s)	123, 187, 361, 406, 623, 722
BstV1I	GCAGC	3 cut(s)	365, 448, 574
BstX2I	RGATCY	3 cut(s)	52, 599, 660
BstYI	RGATCY	3 cut(s)	52, 599, 660
BstZ17I	GTATAC	1 cut(s)	507
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	270, 366, 629, 727, 884
BtgI	CCRYGG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	713
BtsCI	GGATG	4 cut(s)	10, 93, 156, 540
BtsIMutI	CAGTG	3 cut(s)	295, 673, 885
BveI	ACCTGC	1 cut(s)	727
Cfr13I	GGNCC	4 cut(s)	268, 627, 716, 725
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	411
CspCI	CAANNNNNGTGG	4 cut(s)	127, 162, 730, 765
CviAII	CATG	5 cut(s)	14, 62, 80, 666, 747
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	300, 348, 648
DpnI	GATC	6 cut(s)	54, 246, 373, 601, 662, 861
DpnII	GATC	6 cut(s)	52, 244, 371, 599, 660, 859
DraI	TTTAAA	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	882
Eco130I	CCWWGG	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	716
Eco81I	CCTNAGG	1 cut(s)	348
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRII	CCWGG	5 cut(s)	123, 187, 361, 406, 623
EcoT14I	CCWWGG	1 cut(s)	367
EcoT22I	ATGCAT	2 cut(s)	63, 748
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	5 cut(s)	17, 65, 83, 669, 750
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	5 cut(s)	13, 61, 79, 665, 746
FbaI	TGATCA	1 cut(s)	859
FblI	GTMKAC	3 cut(s)	222, 276, 506
Fnu4HI	GCNGC	3 cut(s)	354, 437, 588
FokI	GGATG	4 cut(s)	17, 80, 163, 547
Fsp4HI	GCNGC	3 cut(s)	354, 437, 588
FspBI	CTAG	2 cut(s)	368, 603
GluI	GCNGC	3 cut(s)	354, 437, 588
GsaI	CCCAGC	1 cut(s)	610
HaeIII	GGCC	5 cut(s)	270, 366, 629, 727, 884
HapII	CCGG	1 cut(s)	723
Hin1II	CATG	5 cut(s)	17, 65, 83, 669, 750
HincII	GTYRAC	3 cut(s)	223, 252, 696
HindII	GTYRAC	3 cut(s)	223, 252, 696
HinfI	GANTC	3 cut(s)	499, 616, 817
HpaI	GTTAAC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	3 cut(s)	176, 224, 366
Hpy188I	TCNGA	2 cut(s)	384, 458
Hpy188III	TCNNGA	5 cut(s)	50, 338, 464, 656, 851
Hpy99I	CGWCG	1 cut(s)	714
HpyAV	CCTTC	3 cut(s)	189, 298, 474
HpyCH4III	ACNGT	6 cut(s)	227, 290, 511, 677, 880, 906
HpyCH4IV	ACGT	2 cut(s)	279, 712
HpyCH4V	TGCA	9 cut(s)	34, 61, 67, 88, 538, 590, 741, 746, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	3 cut(s)	300, 348, 648
HpySE526I	ACGT	2 cut(s)	279, 712
Hsp92II	CATG	5 cut(s)	17, 65, 83, 669, 750
Ksp22I	TGATCA	1 cut(s)	859
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	6 cut(s)	52, 244, 371, 599, 660, 859
Lsp1109I	GCAGC	3 cut(s)	365, 448, 574
LweI	GCATC	6 cut(s)	97, 525, 599, 661, 696, 832
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	2 cut(s)	368, 603
MaeII	ACGT	2 cut(s)	279, 712
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	6 cut(s)	54, 246, 373, 601, 662, 861
MboI	GATC	6 cut(s)	52, 244, 371, 599, 660, 859
MboII	GAAGA	3 cut(s)	508, 812, 851
MflI	RGATCY	3 cut(s)	52, 599, 660
MlsI	TGGCCA	1 cut(s)	884
MluCI	AATT	4 cut(s)	68, 341, 484, 681
MluNI	TGGCCA	1 cut(s)	884
Mox20I	TGGCCA	1 cut(s)	884
Mph1103I	ATGCAT	2 cut(s)	63, 748
MscI	TGGCCA	1 cut(s)	884
MseI	TTAA	2 cut(s)	251, 827
Msp20I	TGGCCA	1 cut(s)	884
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	6 cut(s)	125, 189, 363, 408, 625, 724
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	5 cut(s)	125, 189, 363, 408, 625
MwoI	GCNNNNNNNGC	1 cut(s)	593
NciI	CCSGG	1 cut(s)	724
NdeII	GATC	6 cut(s)	52, 244, 371, 599, 660, 859
NlaIII	CATG	5 cut(s)	17, 65, 83, 669, 750
NsiI	ATGCAT	2 cut(s)	63, 748
NspI	RCATGY	2 cut(s)	65, 750
PctI	GAATGC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	499, 616, 817
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	355, 438, 589
Psp6I	CCWGG	5 cut(s)	123, 187, 361, 406, 623
PspFI	CCCAGC	1 cut(s)	606
PspGI	CCWGG	5 cut(s)	123, 187, 361, 406, 623
PspPI	GGNCC	4 cut(s)	268, 627, 716, 725
PsuI	RGATCY	3 cut(s)	52, 599, 660
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	251, 827
SatI	GCNGC	3 cut(s)	354, 437, 588
Sau3AI	GATC	6 cut(s)	52, 244, 371, 599, 660, 859
Sau96I	GGNCC	4 cut(s)	268, 627, 716, 725
ScrFI	CCNGG	6 cut(s)	125, 189, 363, 408, 625, 724
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	6 cut(s)	97, 525, 599, 661, 696, 832
SinI	GGWCC	1 cut(s)	716
SmlI	CTYRAG	2 cut(s)	48, 851
SmoI	CTYRAG	2 cut(s)	48, 851
Sse9I	AATT	4 cut(s)	68, 341, 484, 681
SsiI	CCGC	3 cut(s)	108, 434, 514
SspMI	CTAG	2 cut(s)	368, 603
StyD4I	CCNGG	6 cut(s)	123, 187, 361, 406, 623, 722
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	6 cut(s)	227, 290, 511, 677, 880, 906
TaiI	ACGT	2 cut(s)	282, 715
TaqI	TCGA	5 cut(s)	28, 222, 398, 463, 614
TasI	AATT	4 cut(s)	68, 341, 484, 681
TfiI	GAWTC	3 cut(s)	499, 616, 817
Tru1I	TTAA	2 cut(s)	251, 827
Tru9I	TTAA	2 cut(s)	251, 827
TscAI	CASTG	3 cut(s)	295, 680, 885
TseI	GCWGC	3 cut(s)	353, 436, 587
TspDTI	ATGAA	2 cut(s)	597, 852
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	3 cut(s)	295, 680, 885
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	716
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	2 cut(s)	65, 750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XmaJI	CCTAGG	1 cut(s)	367
XmiI	GTMKAC	3 cut(s)	222, 276, 506
XspI	CTAG	2 cut(s)	368, 603
Zsp2I	ATGCAT	2 cut(s)	63, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.