MD10G1055000.v1.1

GATA transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
7508559 .. 7513121
4563 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1055000.v1.1.491

Sequence Viewer

Length: 885 bp
ATGGCAGAATCCGATCACCAGAATTCAATGTACAGCACCGGAGGAGGAGTGACACAGAGTAACCAAGTTGACGACCAAGACGACGACGTTGAAGAGCCCATTGACAACCGTAACATACGCTTCGAAGATAGCACCGCCATTCCTCCAAATCAACTCTACCTTCCCAGCTCCGAATACCCTCCGCCGCCCGCCGCAAACGGTGCCTCTGATCAGCTTACTCTGTCCTTCCAGGGTGAAGTTTATGTCTTCGACGCTGTTTCGCCTGATAAGGTGCAGGCGGTACTGCTACTTTTGGGTGGATATGAAATCCCTTCTGGCATTCCTTCCATGGGGCCGGTTCCTCTTAACCAGCAAGGTATGAATGACTTACCTGCAAAGCCAATTCAACCGCAGAGAGCTGCATCTTTAAGTCGGTTTCGCGAGAAGAGAAAAGAACGTTGTTTTGATAAGAAAATCCGTTACACCGTTCGGAAAGAAGTTGCGCTAAGAATGCAGCGTAAAAAGGGTCAATTTACATCGTCTAAGGCTAGTTCCGATGATGGAGGCCCTGCGTCATCTACACAGGGCTCTGGTCAAGATGAAAGCATGCGGGAAACTTCGTGCACACACTGTGGGATAAGCTCAAAGTCAACTCCGATGATGCGTCGTGGGCCAGCAGGTCCAAGGACTCTATGTAATGCATGTGGGCTGAAATGGGCCAACAAGGGATCTCTAACAGGTGTTCCTAAGGTTTTAAATGTAGGTATCCACGATCCTTCTTTAAAAGGAATTGAACAGAGTAACGGCGAAGTTCAAGACTCTGATGTTGTAGCCATGGGTGCCAACGTTGCCCCTTCCTCAGCTAATGGCGATAATTCAGCCATGACCGTAGACAGGAAATTGTGA

Protein Analysis

295

Amino Acids

31.55

Weight (kDa)

5.73

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 68 - 99 3.3e-12 tify domain
Jas_motif PF09425 131 - 154 1.3e-07 Jas motif
CCT PF06203 132 - 174 1.5e-15 CCT motif
GATA PF00320 201 - 237 4e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 379, 647
AccB1I GGYRCC 2 cut(s) 200, 818
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 420
AciI CCGC 8 cut(s) 135, 182, 185, 189, 192, 278, 389, 589
AclI AACGTT 2 cut(s) 436, 825
AclWI GGATC 2 cut(s) 715, 746
AcsI RAATTY 1 cut(s) 22
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 2 cut(s) 32, 282
AfiI CCNNNNNNNGG 2 cut(s) 329, 873
AgsI TTSAA 5 cut(s) 27, 92, 386, 773, 794
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 5 cut(s) 168, 214, 398, 621, 842
AluI AGCT 5 cut(s) 168, 214, 398, 621, 842
Alw21I GWGCWC 1 cut(s) 605
Alw44I GTGCAC 1 cut(s) 601
AlwI GGATC 2 cut(s) 715, 746
AoxI GGCC 4 cut(s) 332, 544, 650, 696
ApaLI GTGCAC 1 cut(s) 601
ApeKI GCWGC 2 cut(s) 398, 493
ApoI RAATTY 1 cut(s) 22
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 5 cut(s) 332, 545, 650, 659, 696
AsuHPI GGTGA 2 cut(s) 8, 245
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 659
AxyI CCTNAGG 1 cut(s) 726
BaeGI GKGCMC 1 cut(s) 605
BanI GGYRCC 2 cut(s) 200, 818
BanII GRGCYC 2 cut(s) 99, 569
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 605
BbvCI CCTCAGC 1 cut(s) 838
BbvI GCAGC 2 cut(s) 385, 505
BccI CCATC 1 cut(s) 533
BceAI ACGGC 1 cut(s) 799
BciT130I CCWGG 1 cut(s) 230
BciVI GTATCC 1 cut(s) 755
BclI TGATCA 1 cut(s) 208
BfaI CTAG 1 cut(s) 528
BfuAI ACCTGC 2 cut(s) 379, 647
BfuI GTATCC 1 cut(s) 755
BisI GCNGC 4 cut(s) 185, 192, 399, 494
BlsI GCNGC 4 cut(s) 186, 193, 400, 495
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 659
BmgT120I GGNCC 5 cut(s) 332, 545, 650, 659, 696
BmiI GGNNCC 4 cut(s) 202, 333, 339, 820
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 2 cut(s) 410, 630
BpiI GAAGAC 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 838
Bpu14I TTCGAA 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 229, 327, 662, 813
BsaWI WCCGGW 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 873
Bse118I RCCGGY 1 cut(s) 334
Bse21I CCTNAGG 1 cut(s) 726
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 4 cut(s) 229, 327, 662, 813
BseLI CCNNNNNNNGG 2 cut(s) 329, 873
BseMII CTCAG 1 cut(s) 852
BseRI GAGGAG 2 cut(s) 57, 60
BseSI GKGCMC 1 cut(s) 605
BseXI GCAGC 2 cut(s) 385, 505
BseYI CCCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 4 cut(s) 334, 546, 652, 698
BshNI GGYRCC 2 cut(s) 200, 818
BsiHKAI GWGCWC 1 cut(s) 605
BsiSI CCGG 2 cut(s) 39, 335
BslI CCNNNNNNNGG 2 cut(s) 329, 873
BsmI GAATGC 2 cut(s) 318, 495
BsnI GGCC 4 cut(s) 334, 546, 652, 698
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 3 cut(s) 99, 569, 605
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 4 cut(s) 13, 208, 707, 751
Bsp19I CCATGG 2 cut(s) 327, 813
Bsp68I TCGCGA 1 cut(s) 420
BspACI CCGC 8 cut(s) 135, 182, 185, 189, 192, 278, 389, 589
BspANI GGCC 4 cut(s) 334, 546, 652, 698
BspCNI CTCAG 1 cut(s) 851
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 4 cut(s) 202, 333, 339, 820
BspMI ACCTGC 2 cut(s) 379, 647
BspPI GGATC 2 cut(s) 715, 746
BspQI GCTCTTC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 2 cut(s) 200, 818
BsrFI RCCGGY 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 4 cut(s) 229, 327, 662, 813
BssMI GATC 4 cut(s) 13, 208, 707, 751
BssT1I CCWWGG 3 cut(s) 327, 662, 813
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 5 cut(s) 110, 200, 466, 611, 868
Bst6I CTCTTC 2 cut(s) 87, 419
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 4 cut(s) 189, 276, 587, 654
BstDEI CTNAG 4 cut(s) 485, 522, 726, 838
BstDSI CCRYGG 2 cut(s) 327, 813
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 4 cut(s) 16, 211, 710, 754
BstMBI GATC 4 cut(s) 13, 208, 707, 751
BstMWI GCNNNNNNNGC 5 cut(s) 200, 490, 649, 818, 827
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 2 cut(s) 589, 684
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 605
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 385, 505
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
Bsu36I CCTNAGG 1 cut(s) 726
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 4 cut(s) 334, 546, 652, 698
BtgI CCRYGG 2 cut(s) 327, 813
BtsIMutI CAGTG 1 cut(s) 607
BtuMI TCGCGA 1 cut(s) 420
BveI ACCTGC 2 cut(s) 379, 647
Cac8I GCNNGC 4 cut(s) 189, 276, 587, 654
CfoI GCGC 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 5 cut(s) 332, 545, 650, 659, 696
CseI GACGC 3 cut(s) 260, 540, 632
Csp6I GTAC 2 cut(s) 31, 281
CviAII CATG 5 cut(s) 328, 586, 681, 814, 862
CviQI GTAC 2 cut(s) 31, 281
DdeI CTNAG 4 cut(s) 485, 522, 726, 838
DpnI GATC 4 cut(s) 15, 210, 709, 753
DpnII GATC 4 cut(s) 13, 208, 707, 751
DraI TTTAAA 2 cut(s) 735, 762
DraIII CACNNNGTG 1 cut(s) 611
Eam1104I CTCTTC 2 cut(s) 87, 419
EarI CTCTTC 2 cut(s) 87, 419
EciI GGCGGA 1 cut(s) 171
Eco130I CCWWGG 3 cut(s) 327, 662, 813
Eco24I GRGCYC 2 cut(s) 99, 569
Eco47I GGWCC 1 cut(s) 659
Eco81I CCTNAGG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 3 cut(s) 327, 662, 813
EcoT22I ATGCAT 1 cut(s) 682
EcoT38I GRGCYC 2 cut(s) 99, 569
ErhI CCWWGG 3 cut(s) 327, 662, 813
FaeI CATG 5 cut(s) 331, 589, 684, 817, 865
FatI CATG 5 cut(s) 327, 585, 680, 813, 861
FauI CCCGC 2 cut(s) 196, 582
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 4 cut(s) 185, 192, 399, 494
FriOI GRGCYC 2 cut(s) 99, 569
Fsp4HI GCNGC 4 cut(s) 185, 192, 399, 494
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 483
GluI GCNGC 4 cut(s) 185, 192, 399, 494
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 4 cut(s) 334, 546, 652, 698
HapII CCGG 2 cut(s) 39, 335
HgaI GACGC 3 cut(s) 260, 540, 632
HhaI GCGC 1 cut(s) 484
Hin1II CATG 5 cut(s) 331, 589, 684, 817, 865
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HincII GTYRAC 2 cut(s) 70, 630
HindII GTYRAC 2 cut(s) 70, 630
HinfI GANTC 3 cut(s) 8, 667, 797
HpaII CCGG 2 cut(s) 39, 335
HphI GGTGA 2 cut(s) 8, 245
Hpy166II GTNNAC 4 cut(s) 70, 603, 630, 871
Hpy188I TCNGA 7 cut(s) 13, 172, 208, 471, 535, 636, 802
Hpy188III TCNNGA 3 cut(s) 419, 575, 794
Hpy8I GTNNAC 4 cut(s) 70, 603, 630, 871
Hpy99I CGWCG 4 cut(s) 86, 89, 254, 648
HpyAV CCTTC 6 cut(s) 170, 235, 321, 333, 765, 843
HpyCH4III ACNGT 5 cut(s) 110, 200, 466, 611, 868
HpyCH4IV ACGT 3 cut(s) 87, 436, 825
HpyCH4V TGCA 6 cut(s) 274, 374, 401, 493, 603, 680
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 490, 649, 818, 827
HpyF3I CTNAG 4 cut(s) 485, 522, 726, 838
HpySE526I ACGT 3 cut(s) 87, 436, 825
Hsp92II CATG 5 cut(s) 331, 589, 684, 817, 865
HspAI GCGC 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 13, 208, 707, 751
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 2 cut(s) 385, 505
LweI GCATC 2 cut(s) 410, 630
MaeI CTAG 1 cut(s) 528
MaeII ACGT 3 cut(s) 87, 436, 825
MaeIII GTNAC 5 cut(s) 49, 59, 110, 458, 779
MalI GATC 4 cut(s) 15, 210, 709, 753
MboI GATC 4 cut(s) 13, 208, 707, 751
MboII GAAGA 4 cut(s) 104, 137, 238, 436
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 3 cut(s) 99, 569, 605
MluCI AATT 6 cut(s) 22, 381, 509, 768, 853, 878
MlyI GAGTC 2 cut(s) 661, 791
MnlI CCTC 8 cut(s) 35, 38, 153, 189, 214, 351, 536, 847
Mph1103I ATGCAT 1 cut(s) 682
MseI TTAA 4 cut(s) 345, 407, 734, 761
MspI CCGG 2 cut(s) 39, 335
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 2 cut(s) 318, 495
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 5 cut(s) 200, 490, 649, 818, 827
NcoI CCATGG 2 cut(s) 327, 813
NdeII GATC 4 cut(s) 13, 208, 707, 751
NlaIII CATG 5 cut(s) 331, 589, 684, 817, 865
NlaIV GGNNCC 4 cut(s) 202, 333, 339, 820
NmuCI GTSAC 1 cut(s) 49
NruI TCGCGA 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 2 cut(s) 589, 684
NspV TTCGAA 1 cut(s) 123
PaeI GCATGC 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 2 cut(s) 318, 495
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 4 cut(s) 186, 193, 400, 495
PleI GAGTC 2 cut(s) 661, 791
PpsI GAGTC 2 cut(s) 661, 791
Psp1406I AACGTT 2 cut(s) 436, 825
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 4 cut(s) 202, 333, 339, 820
PspPI GGNCC 5 cut(s) 332, 545, 650, 659, 696
PsuI RGATCY 1 cut(s) 707
RruI TCGCGA 1 cut(s) 420
RsaI GTAC 2 cut(s) 32, 282
RsaNI GTAC 2 cut(s) 31, 281
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 4 cut(s) 345, 407, 734, 761
SatI GCNGC 4 cut(s) 185, 192, 399, 494
Sau3AI GATC 4 cut(s) 13, 208, 707, 751
Sau96I GGNCC 5 cut(s) 332, 545, 650, 659, 696
SchI GAGTC 2 cut(s) 661, 791
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 3 cut(s) 99, 569, 605
SfaNI GCATC 2 cut(s) 410, 630
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 1 cut(s) 659
SphI GCATGC 1 cut(s) 589
Sse9I AATT 6 cut(s) 22, 381, 509, 768, 853, 878
SsiI CCGC 8 cut(s) 135, 182, 185, 189, 192, 278, 389, 589
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 3 cut(s) 327, 662, 813
TaaI ACNGT 5 cut(s) 110, 200, 466, 611, 868
TaiI ACGT 3 cut(s) 90, 439, 828
TaqI TCGA 2 cut(s) 123, 249
TasI AATT 6 cut(s) 22, 381, 509, 768, 853, 878
TatI WGTACW 1 cut(s) 30
TauI GCSGC 2 cut(s) 187, 194
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 345, 407, 734, 761
Tru9I TTAA 4 cut(s) 345, 407, 734, 761
TscAI CASTG 1 cut(s) 614
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 398, 493
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 318, 374, 594
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 1 cut(s) 614
VneI GTGCAC 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 659
XapI RAATTY 1 cut(s) 22
XceI RCATGY 2 cut(s) 589, 684
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.