Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

34599572 .. 34603358

Gene Structure 3787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34810.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCGACCGTCAATCCACAGCCTCTGCAAGCTCGACCAATCGAGGAGCACGGGAGGGCTCCAATACAGGTAGAAGACGATGACGGTGATTACGAAGATGGTGGTGATGATGGTATGGAGGACATGGAAGAGGTGCATGTGAACTCCGTCAGCGTTGAGAAGCGAGGAGGAGGTGGGGGTGGAGGTGGGGGTGGAGGTGGAGGAGGAGGTGTGGTTATGGCTTCCAGGACCAGTGAGCTCACTCTGTCTTTTGAAGGCGAGGTGTATGTCTTCCCTGCTGTTACACCTGAGAAGGTGCAAGCAGTGCTCTTGCTGTTGGGAGGACGTGATATACCAACTGGCGTGCCCACTGTTGAAGTGTCTTCTGATCAGAATACAAGGGGTGTGGGTGGCACTTCAAAGCGTTCAAATCTTTCGCGAAGAATAGCTTCCCTGGTTAGGTTTCGTGAAAAACGGAAGGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTGCGTAAAGAGGTTGCACAGAGGATGCTTCGTAAGAATGGACAGTTTGCATCGTTAAAACAAACTTCAGGTGCTTCTAGTTGGGAGTCGACTCAGAGTTGCCTTCAAGATGGCACTCCTCAACCAGAAACTGTCTTACGGAGATGTCAACATTGTGGAGTTAGTGAAAATAATACTCCTGCAATGCGCCGTGGACCTGCTGGCCCAAGAACTTTATGTAATGCATGTGGTCTTATGTGGGCAAATAAGGGAACATTGAGAGATCTCAGCAAAAGTGGAAGGAACCTTACCGTCGACCATATAGAACCTGGGATGCCGATTGAAGCCAAGCCCGTAATTGTTGAAGGAGAAATCTCCAGAAACCAGGATGAGCATGGTACTCTTGGTGGTCTTTTGAAAAAAGTTGATGAAGGATCCAATGATGCTTCTGTCAACCCAGATGAGGAAGATTCGCAGGAAACTGCCGAAGATCTTACTAACAGTTTTCCAATGGGGATTGTTTCTCCAGCCAATGATGAGCAGGAGCCGCTGGCTGAGCTTGCAAATCCGTCGGATACAGATATAGACATCACTACTAATTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

360

Amino Acids

38.53

Weight (kDa)

4.87

Isoelectric Point (pI)

53.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	697
AccI	GTMKAC	2 cut(s)	581, 786
AccII	CGCG	1 cut(s)	418
AciI	CCGC	1 cut(s)	1019
AclWI	GGATC	2 cut(s)	900, 913
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	2 cut(s)	488, 871
AfiI	CCNNNNNNNGG	2 cut(s)	438, 934
AgsI	TTSAA	8 cut(s)	254, 356, 399, 408, 599, 815, 836, 889
AjiI	CACGTC	1 cut(s)	326
AjnI	CCWGG	4 cut(s)	224, 432, 799, 855
AluBI	AGCT	4 cut(s)	32, 238, 428, 1030
AluI	AGCT	4 cut(s)	32, 238, 428, 1030
Alw21I	GWGCWC	3 cut(s)	51, 240, 309
AlwI	GGATC	2 cut(s)	900, 913
AlwNI	CAGNNNCTG	2 cut(s)	25, 623
AoxI	GGCC	1 cut(s)	694
Asp700I	GAANNNNTTC	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	681
AspS9I	GGNCC	3 cut(s)	228, 686, 695
AsuHPI	GGTGA	2 cut(s)	98, 116
AvaII	GGWCC	2 cut(s)	228, 686
BaeGI	GKGCMC	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	905
BanII	GRGCYC	2 cut(s)	61, 240
BarI	GAAGNNNNNNTAC	2 cut(s)	763, 795
BbsI	GAAGAC	3 cut(s)	81, 262, 354
Bbv12I	GWGCWC	3 cut(s)	51, 240, 309
BccI	CCATC	3 cut(s)	92, 104, 596
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	1023, 1057
BciT130I	CCWGG	4 cut(s)	226, 434, 801, 857
BciVI	GTATCC	1 cut(s)	1039
BclI	TGATCA	1 cut(s)	367
BfaI	CTAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	697
BfuI	GTATCC	1 cut(s)	1039
BglII	AGATCT	2 cut(s)	754, 961
BisI	GCNGC	1 cut(s)	1019
BlpI	GCTNAGC	1 cut(s)	1026
BlsI	GCNGC	1 cut(s)	1020
Bme1390I	CCNGG	4 cut(s)	226, 434, 801, 857
Bme18I	GGWCC	2 cut(s)	228, 686
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	228, 686, 695
BmiI	GGNNCC	4 cut(s)	60, 776, 907, 1017
BmrFI	CCNGG	4 cut(s)	226, 434, 801, 857
BmsI	GCATC	4 cut(s)	507, 551, 795, 904
BpiI	GAAGAC	3 cut(s)	81, 262, 354
BpmI	CTGGAG	2 cut(s)	832, 981
Bpu1102I	GCTNAGC	1 cut(s)	1026
BsaJI	CCNNGG	3 cut(s)	432, 682, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 198, 225, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 934
Bse1I	ACTGG	2 cut(s)	231, 343
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	4 cut(s)	226, 434, 801, 857
BseDI	CCNNGG	3 cut(s)	432, 682, 800
BseGI	GGATG	3 cut(s)	522, 810, 865
BseLI	CCNNNNNNNGG	2 cut(s)	438, 934
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	4 cut(s)	279, 599, 772, 1017
BseNI	ACTGG	2 cut(s)	231, 343
BseRI	GAGGAG	6 cut(s)	59, 180, 183, 216, 219, 600
BseSI	GKGCMC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	418
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	696
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	3 cut(s)	51, 240, 309
BslI	CCNNNNNNNGG	2 cut(s)	438, 934
BsnI	GGCC	1 cut(s)	696
Bsp1286I	GDGCHC	5 cut(s)	51, 61, 240, 309, 348
Bsp143I	GATC	4 cut(s)	367, 754, 905, 961
Bsp1720I	GCTNAGC	1 cut(s)	1026
Bsp68I	TCGCGA	1 cut(s)	418
BspACI	CCGC	1 cut(s)	1019
BspANI	GGCC	1 cut(s)	696
BspCNI	CTCAG	4 cut(s)	280, 598, 771, 1018
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	4 cut(s)	60, 776, 907, 1017
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	2 cut(s)	900, 913
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	231, 343
BssECI	CCNNGG	3 cut(s)	432, 682, 800
BssMI	GATC	4 cut(s)	367, 754, 905, 961
Bst2UI	CCWGG	4 cut(s)	226, 434, 801, 857
Bst4CI	ACNGT	8 cut(s)	10, 86, 352, 493, 537, 625, 784, 974
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	6 cut(s)	30, 300, 344, 694, 1023, 1032
BstDEI	CTNAG	4 cut(s)	288, 585, 758, 1026
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	3 cut(s)	522, 810, 865
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	681
BstKTI	GATC	4 cut(s)	370, 757, 908, 964
BstMBI	GATC	4 cut(s)	367, 754, 905, 961
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	304, 1018, 1027, 1031
BstNI	CCWGG	4 cut(s)	226, 434, 801, 857
BstNSI	RCATGY	2 cut(s)	140, 720
BstSCI	CCNGG	4 cut(s)	224, 432, 799, 855
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	1 cut(s)	418
BstV2I	GAAGAC	3 cut(s)	81, 262, 354
BstX2I	RGATCY	3 cut(s)	754, 905, 961
BstYI	RGATCY	3 cut(s)	754, 905, 961
BsuI	GTATCC	1 cut(s)	1039
BsuRI	GGCC	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	682
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	3 cut(s)	522, 810, 865
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	4 cut(s)	238, 309, 348, 489
BtuMI	TCGCGA	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	6 cut(s)	30, 300, 344, 694, 1023, 1032
CaiI	CAGNNNCTG	2 cut(s)	25, 623
CfoI	GCGC	1 cut(s)	681
Cfr13I	GGNCC	3 cut(s)	228, 686, 695
Csp6I	GTAC	2 cut(s)	487, 870
CspCI	CAANNNNNGTGG	2 cut(s)	366, 401
CviAII	CATG	4 cut(s)	124, 137, 717, 866
CviQI	GTAC	2 cut(s)	487, 870
DdeI	CTNAG	4 cut(s)	288, 585, 758, 1026
DpnI	GATC	4 cut(s)	369, 756, 907, 963
DpnII	GATC	4 cut(s)	367, 754, 905, 961
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	2 cut(s)	61, 240
Eco47I	GGWCC	2 cut(s)	228, 686
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	238
EcoRII	CCWGG	4 cut(s)	224, 432, 799, 855
EcoT22I	ATGCAT	1 cut(s)	718
EcoT38I	GRGCYC	2 cut(s)	61, 240
FaeI	CATG	4 cut(s)	127, 140, 720, 869
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FatI	CATG	4 cut(s)	123, 136, 716, 865
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	2 cut(s)	581, 786
Fnu4HI	GCNGC	1 cut(s)	1019
FokI	GGATG	3 cut(s)	529, 817, 872
FriOI	GRGCYC	2 cut(s)	61, 240
Fsp4HI	GCNGC	1 cut(s)	1019
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	680
GluI	GCNGC	1 cut(s)	1019
GsuI	CTGGAG	2 cut(s)	832, 981
HaeIII	GGCC	1 cut(s)	696
HhaI	GCGC	1 cut(s)	681
Hin1II	CATG	4 cut(s)	127, 140, 720, 869
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HincII	GTYRAC	4 cut(s)	582, 641, 787, 925
HindII	GTYRAC	4 cut(s)	582, 641, 787, 925
HinfI	GANTC	3 cut(s)	578, 583, 941
HphI	GGTGA	2 cut(s)	98, 116
Hpy166II	GTNNAC	7 cut(s)	142, 489, 582, 641, 686, 787, 925
Hpy188I	TCNGA	4 cut(s)	367, 372, 588, 1045
Hpy188III	TCNNGA	4 cut(s)	417, 446, 599, 849
Hpy8I	GTNNAC	7 cut(s)	142, 489, 582, 641, 686, 787, 925
Hpy99I	CGWCG	2 cut(s)	788, 1045
HpyAV	CCTTC	7 cut(s)	248, 286, 451, 605, 765, 830, 896
HpyCH4III	ACNGT	8 cut(s)	10, 86, 352, 493, 537, 625, 784, 974
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	8 cut(s)	28, 136, 298, 509, 542, 674, 716, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	304, 1018, 1027, 1031
HpyF3I	CTNAG	4 cut(s)	288, 585, 758, 1026
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	4 cut(s)	127, 140, 720, 869
HspAI	GCGC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	367, 754, 905, 961
LmnI	GCTCC	3 cut(s)	46, 64, 1015
LweI	GCATC	4 cut(s)	507, 551, 795, 904
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	4 cut(s)	369, 756, 907, 963
MboI	GATC	4 cut(s)	367, 754, 905, 961
MboII	GAAGA	8 cut(s)	86, 107, 140, 262, 354, 432, 950, 971
MflI	RGATCY	3 cut(s)	754, 905, 961
MhlI	GDGCHC	5 cut(s)	51, 61, 240, 309, 348
MluCI	AATT	3 cut(s)	480, 828, 1069
MlyI	GAGTC	2 cut(s)	577, 587
MmeI	TCCRAC	1 cut(s)	1023
Mph1103I	ATGCAT	1 cut(s)	718
MroXI	GAANNNNTTC	1 cut(s)	427
MseI	TTAA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	1021
MspR9I	CCNGG	4 cut(s)	226, 434, 801, 857
MvaI	CCWGG	4 cut(s)	226, 434, 801, 857
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	4 cut(s)	304, 1018, 1027, 1031
NdeII	GATC	4 cut(s)	367, 754, 905, 961
NlaIII	CATG	4 cut(s)	127, 140, 720, 869
NlaIV	GGNNCC	4 cut(s)	60, 776, 907, 1017
NruI	TCGCGA	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	2 cut(s)	140, 720
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	941
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	1020
PleI	GAGTC	2 cut(s)	577, 586
PpsI	GAGTC	2 cut(s)	577, 586
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	4 cut(s)	224, 432, 799, 855
PspGI	CCWGG	4 cut(s)	224, 432, 799, 855
PspN4I	GGNNCC	4 cut(s)	60, 776, 907, 1017
PspPI	GGNCC	3 cut(s)	228, 686, 695
PstNI	CAGNNNCTG	2 cut(s)	25, 623
PsuI	RGATCY	3 cut(s)	754, 905, 961
RruI	TCGCGA	1 cut(s)	418
RsaI	GTAC	2 cut(s)	488, 871
RsaNI	GTAC	2 cut(s)	487, 870
SacI	GAGCTC	1 cut(s)	240
SalI	GTCGAC	2 cut(s)	580, 785
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	1 cut(s)	1019
Sau3AI	GATC	4 cut(s)	367, 754, 905, 961
Sau96I	GGNCC	3 cut(s)	228, 686, 695
SchI	GAGTC	2 cut(s)	577, 587
ScrFI	CCNGG	4 cut(s)	226, 434, 801, 857
SduI	GDGCHC	5 cut(s)	51, 61, 240, 309, 348
SfaNI	GCATC	4 cut(s)	507, 551, 795, 904
SinI	GGWCC	2 cut(s)	228, 686
Sse9I	AATT	3 cut(s)	480, 828, 1069
SsiI	CCGC	1 cut(s)	1019
SspMI	CTAG	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	4 cut(s)	224, 432, 799, 855
TaaI	ACNGT	8 cut(s)	10, 86, 352, 493, 537, 625, 784, 974
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	4 cut(s)	34, 42, 581, 786
TasI	AATT	3 cut(s)	480, 828, 1069
TauI	GCSGC	1 cut(s)	1021
TfiI	GAWTC	1 cut(s)	941
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	4 cut(s)	238, 309, 355, 496
TspDTI	ATGAA	1 cut(s)	915
TspGWI	ACGGA	4 cut(s)	136, 469, 646, 1029
TspRI	CASTG	4 cut(s)	238, 309, 355, 496
VpaK11BI	GGWCC	2 cut(s)	228, 686
XceI	RCATGY	2 cut(s)	140, 720
XcmI	CCANNNNNNNNNTGG	2 cut(s)	797, 863
XmiI	GTMKAC	2 cut(s)	581, 786
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	1 cut(s)	570
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.