MD09G1160800.v1.1

GATA transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
12975792 .. 12980881
5090 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1160800.v1.1.491

Sequence Viewer

Length: 864 bp
ATGGATGACATCAGTGGCAGCAATGCGTCGATGCATATGAGCGATGAAGTGCATTTGCAATACATGCAAGAACATGAGCATCCTCAGGGGTTGCCTCAGATGAGCAATGGGAATGGGGTGGCTGATGATCATGATGATGGAAGTGGTGCTGGTACTGGTGGTGCTGAGCTTTCCGAAGTTAATGTACAGTCTGAACCTGTGAATCTCTCTGATATGAGTAGTGGGATGGTGGACCATAGCGGCAATAATGGGGACCAGCTCACATTGTCATTTCAGGGTCAGGTTTTTGTGTTCGACTCTGTGTCACCCGAGAAGGTTCAAGCTGTGTTGCTGCTATTGGGGGGCCGTGAAGTACCTCCGGGCATGCCTGCCGCTCCACTAACCACCCAGCATGATAATAGGGCCCTTACTAGTATTCCACAACGGTTGAGTGTCCCTCAAAGACTGGCTTCACTTATTAGATTCCGTGAAAAACGAAAAGAAAGAAATTTCGACAAGAAGATTCGTTATACTGTTCGCAAAGAGGTAGCTCTTAGGATGCAACGAAAGAAAGGTCAATTTACATCTTCTAAGCCCAACAGTGATGATTCTGCATCAGCTATCACAAGTTGGGGCTCAAACGAGAACTGGGGTCAGGATGGTAATGGATCCATTCCCCAAGAGGCTGTCTGTCGACACTGTGGCACCAATGAGAAGTGTACACCAATGATGCGACGTGGACCGGATGGACCAAGAACCCTTTGCAATGCATGTGGACTAATGTGGGCAAACAAGGGAACTCTAAGGGACCTCTCCAAGGCAGCACCCCAAGCAGTACAAAACCCTTCCACGAGTAGGAATGAAGACTCCAAACCTGATTTATAA

Protein Analysis

288

Amino Acids

31.23

Weight (kDa)

6.07

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 86 - 114 1e-11 tify domain
Jas_motif PF09425 147 - 170 5e-07 Jas motif
CCT PF06203 148 - 190 1.3e-14 CCT motif
GATA PF00320 224 - 260 8.9e-13 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 862
AccB1I GGYRCC 1 cut(s) 683
AccBSI CCGCTC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 673
AciI CCGC 2 cut(s) 240, 372
AclWI GGATC 2 cut(s) 642, 655
AcsI RAATTY 1 cut(s) 487
AfaI GTAC 5 cut(s) 154, 186, 354, 700, 816
AfiI CCNNNNNNNGG 2 cut(s) 796, 834
AgsI TTSAA 1 cut(s) 320
AhdI GACNNNNNGTC 1 cut(s) 301
AhlI ACTAGT 1 cut(s) 410
AjiI CACGTC 1 cut(s) 716
AluBI AGCT 5 cut(s) 169, 259, 323, 530, 599
AluI AGCT 5 cut(s) 169, 259, 323, 530, 599
AlwI GGATC 2 cut(s) 642, 655
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 343, 402
ApaI GGGCCC 1 cut(s) 406
ApeKI GCWGC 3 cut(s) 18, 331, 800
ApoI RAATTY 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AspS9I GGNCC 8 cut(s) 232, 253, 343, 402, 403, 719, 728, 787
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 5 cut(s) 232, 253, 719, 728, 787
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 406
BamHI GGATCC 1 cut(s) 647
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 2 cut(s) 406, 617
BarI GAAGNNNNNNTAC 2 cut(s) 168, 200
BauI CACGAG 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 849
BbvI GCAGC 3 cut(s) 30, 318, 812
BccI CCATC 4 cut(s) 131, 220, 632, 719
BceAI ACGGC 1 cut(s) 330
BclI TGATCA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 360
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 1 cut(s) 411
BisI GCNGC 5 cut(s) 19, 241, 332, 372, 801
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 5 cut(s) 20, 242, 333, 373, 802
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 5 cut(s) 232, 253, 719, 728, 787
BmeRI GACNNNNNGTC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 308
BmgBI CACGTC 1 cut(s) 716
BmgT120I GGNCC 8 cut(s) 232, 253, 343, 402, 403, 719, 728, 787
BmiI GGNNCC 6 cut(s) 254, 344, 404, 649, 685, 788
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 5 cut(s) 21, 88, 528, 602, 699
BmuI ACTGGG 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 849
BplI GAGNNNNNCTC 2 cut(s) 421, 453
Bpu1102I GCTNAGC 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 795
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 2 cut(s) 796, 834
Bse1I ACTGG 3 cut(s) 160, 450, 632
Bse21I CCTNAGG 1 cut(s) 84
Bse3DI GCAATG 3 cut(s) 28, 112, 751
BseDI CCNNGG 1 cut(s) 795
BseGI GGATG 6 cut(s) 10, 79, 231, 543, 643, 730
BseLI CCNNNNNNNGG 2 cut(s) 796, 834
BseMI GCAATG 3 cut(s) 28, 112, 751
BseMII CTCAG 3 cut(s) 98, 110, 156
BseNI ACTGG 3 cut(s) 160, 450, 632
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 3 cut(s) 30, 318, 812
BseYI CCCAGC 1 cut(s) 387
BshFI GGCC 2 cut(s) 345, 404
BshNI GGYRCC 1 cut(s) 683
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 2 cut(s) 359, 722
BslFI GGGAC 3 cut(s) 266, 419, 800
BslI CCNNNNNNNGG 2 cut(s) 796, 834
BsmFI GGGAC 3 cut(s) 266, 419, 800
BsnI GGCC 2 cut(s) 345, 404
BsoBI CYCGRG 1 cut(s) 308
Bsp120I GGGCCC 1 cut(s) 402
Bsp1286I GDGCHC 2 cut(s) 406, 617
Bsp1407I TGTACA 2 cut(s) 184, 698
Bsp143I GATC 2 cut(s) 127, 647
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 2 cut(s) 240, 372
BspANI GGCC 2 cut(s) 345, 404
BspCNI CTCAG 3 cut(s) 97, 109, 157
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 6 cut(s) 254, 344, 404, 649, 685, 788
BspPI GGATC 2 cut(s) 642, 655
BspT107I GGYRCC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 374
BsrDI GCAATG 3 cut(s) 28, 112, 751
BsrGI TGTACA 2 cut(s) 184, 698
BsrI ACTGG 3 cut(s) 160, 450, 632
BssECI CCNNGG 1 cut(s) 795
BssMI GATC 2 cut(s) 127, 647
BssSI CACGAG 1 cut(s) 829
BssT1I CCWWGG 1 cut(s) 795
Bst2BI CACGAG 1 cut(s) 829
Bst4CI ACNGT 5 cut(s) 189, 426, 514, 581, 680
BstAPI GCANNNNNTGC 1 cut(s) 64
BstAUI TGTACA 2 cut(s) 184, 698
BstC8I GCNNGC 2 cut(s) 365, 369
BstDEI CTNAG 6 cut(s) 84, 96, 165, 533, 570, 782
BstENI CCTNNNNNAGG 1 cut(s) 794
BstF5I GGATG 6 cut(s) 10, 79, 231, 543, 643, 730
BstKTI GATC 2 cut(s) 130, 650
BstMBI GATC 2 cut(s) 127, 647
BstMWI GCNNNNNNNGC 2 cut(s) 64, 809
BstNSI RCATGY 3 cut(s) 67, 367, 753
BstSCI CCNGG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 30, 318, 812
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 1 cut(s) 647
BstYI RGATCY 1 cut(s) 647
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 345, 404
BtgZI GCGATG 1 cut(s) 57
BtrI CACGTC 1 cut(s) 716
BtsCI GGATG 6 cut(s) 10, 79, 231, 543, 643, 730
BtsIMutI CAGTG 3 cut(s) 19, 586, 676
Cac8I GCNNGC 2 cut(s) 365, 369
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 8 cut(s) 232, 253, 343, 402, 403, 719, 728, 787
CseI GACGC 1 cut(s) 15
Csp6I GTAC 5 cut(s) 153, 185, 353, 699, 815
CspCI CAANNNNNGTGG 4 cut(s) 408, 443, 733, 768
CviAII CATG 6 cut(s) 64, 74, 131, 364, 392, 750
CviQI GTAC 5 cut(s) 153, 185, 353, 699, 815
DdeI CTNAG 6 cut(s) 84, 96, 165, 533, 570, 782
DpnI GATC 2 cut(s) 129, 649
DpnII GATC 2 cut(s) 127, 647
DriI GACNNNNNGTC 1 cut(s) 301
Eam1105I GACNNNNNGTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 795
Eco24I GRGCYC 2 cut(s) 406, 617
Eco47I GGWCC 5 cut(s) 232, 253, 719, 728, 787
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoO109I RGGNCCY 3 cut(s) 402, 403, 787
EcoT14I CCWWGG 1 cut(s) 795
EcoT22I ATGCAT 2 cut(s) 36, 751
EcoT38I GRGCYC 2 cut(s) 406, 617
ErhI CCWWGG 1 cut(s) 795
FaeI CATG 6 cut(s) 67, 77, 134, 367, 395, 753
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FaqI GGGAC 3 cut(s) 266, 419, 800
FatI CATG 6 cut(s) 63, 73, 130, 363, 391, 749
FauNDI CATATG 1 cut(s) 36
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 1 cut(s) 673
Fnu4HI GCNGC 5 cut(s) 19, 241, 332, 372, 801
FokI GGATG 6 cut(s) 17, 66, 238, 550, 650, 737
FriOI GRGCYC 2 cut(s) 406, 617
Fsp4HI GCNGC 5 cut(s) 19, 241, 332, 372, 801
FspBI CTAG 1 cut(s) 411
GluI GCNGC 5 cut(s) 19, 241, 332, 372, 801
GsaI CCCAGC 1 cut(s) 391
HaeIII GGCC 2 cut(s) 345, 404
HapII CCGG 2 cut(s) 359, 722
HgaI GACGC 1 cut(s) 15
Hin1II CATG 6 cut(s) 67, 77, 134, 367, 395, 753
HincII GTYRAC 1 cut(s) 674
HindII GTYRAC 1 cut(s) 674
HinfI GANTC 6 cut(s) 202, 296, 462, 502, 587, 845
HpaII CCGG 2 cut(s) 359, 722
HphI GGTGA 1 cut(s) 297
Hpy166II GTNNAC 6 cut(s) 232, 674, 699, 701, 719, 755
Hpy188I TCNGA 4 cut(s) 99, 175, 193, 211
Hpy188III TCNNGA 2 cut(s) 131, 635
Hpy8I GTNNAC 6 cut(s) 232, 674, 699, 701, 719, 755
Hpy99I CGWCG 2 cut(s) 31, 717
HpyAV CCTTC 2 cut(s) 307, 834
HpyCH4III ACNGT 5 cut(s) 189, 426, 514, 581, 680
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 8 cut(s) 34, 52, 58, 67, 541, 593, 744, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 809
HpyF3I CTNAG 6 cut(s) 84, 96, 165, 533, 570, 782
HpySE526I ACGT 1 cut(s) 715
Hsp92II CATG 6 cut(s) 67, 77, 134, 367, 395, 753
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 2 cut(s) 127, 647
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 30, 318, 812
LweI GCATC 5 cut(s) 21, 88, 528, 602, 699
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 1 cut(s) 303
MalI GATC 2 cut(s) 129, 649
MbiI CCGCTC 1 cut(s) 374
MboI GATC 2 cut(s) 127, 647
MboII GAAGA 3 cut(s) 511, 558, 854
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 2 cut(s) 406, 617
MluCI AATT 2 cut(s) 487, 557
MlyI GAGTC 2 cut(s) 290, 839
MnlI CCTC 7 cut(s) 93, 105, 366, 447, 517, 655, 800
Mph1103I ATGCAT 2 cut(s) 36, 751
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 2 cut(s) 359, 722
MspR9I CCNGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 64, 809
NciI CCSGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 36
NdeII GATC 2 cut(s) 127, 647
NlaIII CATG 6 cut(s) 67, 77, 134, 367, 395, 753
NlaIV GGNNCC 6 cut(s) 254, 344, 404, 649, 685, 788
NmuCI GTSAC 1 cut(s) 303
NsiI ATGCAT 2 cut(s) 36, 751
NspI RCATGY 3 cut(s) 67, 367, 753
PaeI GCATGC 1 cut(s) 367
PagI TCATGA 1 cut(s) 130
PfeI GAWTC 4 cut(s) 202, 462, 502, 587
PkrI GCNGC 5 cut(s) 20, 242, 333, 373, 802
PleI GAGTC 2 cut(s) 290, 839
PpsI GAGTC 2 cut(s) 290, 839
PpuMI RGGWCCY 1 cut(s) 787
PsiI TTATAA 1 cut(s) 862
Psp5II RGGWCCY 1 cut(s) 787
PspFI CCCAGC 1 cut(s) 387
PspN4I GGNNCC 6 cut(s) 254, 344, 404, 649, 685, 788
PspOMI GGGCCC 1 cut(s) 402
PspPI GGNCC 8 cut(s) 232, 253, 343, 402, 403, 719, 728, 787
PspPPI RGGWCCY 1 cut(s) 787
PsuI RGATCY 1 cut(s) 647
RsaI GTAC 5 cut(s) 154, 186, 354, 700, 816
RsaNI GTAC 5 cut(s) 153, 185, 353, 699, 815
RseI CAYNNNNRTG 1 cut(s) 135
SalI GTCGAC 1 cut(s) 672
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 5 cut(s) 19, 241, 332, 372, 801
Sau3AI GATC 2 cut(s) 127, 647
Sau96I GGNCC 8 cut(s) 232, 253, 343, 402, 403, 719, 728, 787
SchI GAGTC 2 cut(s) 290, 839
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 2 cut(s) 406, 617
SfaNI GCATC 5 cut(s) 21, 88, 528, 602, 699
SinI GGWCC 5 cut(s) 232, 253, 719, 728, 787
SmiMI CAYNNNNRTG 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 410
SphI GCATGC 1 cut(s) 367
Sse9I AATT 2 cut(s) 487, 557
SsiI CCGC 2 cut(s) 240, 372
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 795
TaaI ACNGT 5 cut(s) 189, 426, 514, 581, 680
TaiI ACGT 1 cut(s) 718
TaqI TCGA 4 cut(s) 29, 294, 492, 673
TasI AATT 2 cut(s) 487, 557
TatI WGTACW 3 cut(s) 184, 698, 814
TauI GCSGC 2 cut(s) 243, 374
TfiI GAWTC 4 cut(s) 202, 462, 502, 587
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 3 cut(s) 19, 586, 683
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 3 cut(s) 18, 331, 800
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 2 cut(s) 60, 855
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 3 cut(s) 19, 586, 683
VpaK11BI GGWCC 5 cut(s) 232, 253, 719, 728, 787
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 1 cut(s) 487
XceI RCATGY 3 cut(s) 67, 367, 753
XmiI GTMKAC 1 cut(s) 673
XspI CTAG 1 cut(s) 411
Zsp2I ATGCAT 2 cut(s) 36, 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.