Prupe.8G071300_v2.0.a1

GATA transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
10432672 .. 10440517
7846 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G071300.4

Sequence Viewer

Length: 1101 bp
ATGGAGATGGTGAACGCTCAGCTACTGCAAGCGAGGGCTTACGAGGGGGAAGATCAACTGGTGCATGTACCGGCAGAGTTGGAAGGGGACTCTGACGAAGGAGGTGGTGCTAAAGCGGCCATGAATGGAGGGGACCAAACTCGGAGGAGCTCTGGAGTAACTATGAGTCGCTGCAATTCGGCTCTGCCTTCTCGGACCAGTGAGCTCACCATCGCCTTCGAGGGCGAGGTCCACGTTTTTCCCGCGGTTACTCCCGATAAGGTGCAAGCAGTGCTTTTGCTATTGGGAGGGCGTGATATATCCAGCAGTTTCCCTAGTTCTGAGTCTCTGCTAGAAAGCAATAGCGGGGGTATAGGCGACATCTCACGAAATTCAAAACTTTCACGAAGAACTGCATCTCTTGTTAGGTTCCGTGAAAAACGGAAAGAGAGATGCTTTGAAAAGAAAATTCGATACACTTGTCGAAAAGAGGTTGCTCAGAGGATGTATCGCAAGAATGGACAGTTTGCATCATTGAAGGACGATTCTAAAATTGCTTCTGGAAACTGCGATTCAAGTGATGGCACTTCTTGTCCAGAATCTGTTTTACGTAGATGTCAGCATTGTGGAATTAGTGAAAAGTCTACCCCAGCAATGCGTCGGGGGCCAGCTGGTCCAAGATCTCTTTGTAATGCTTGTGGTCTCATGTGGGCTAACAAGGGAACTTTGAGAGATCTTACAAAAGCAGGGAGACCCATTCATTTTGACCAAACTGAGCTGGAAACTGCAGCTGACTTTAAACCTTTGATGTTAAAACCAGAAAATGCGCATCTAGACCCGGATGAAGAGGGAAGCCCAGAGGAGAGTAAGCCCATTGCATTGGATACTGAAAACCCTCCTCTGAGACTGGGTGACGAGGATATGCTGGAAACAGCTGAAGCTGCTACTACTAATCACATATCCATCCAAATGGAGAATTCAACTGTTAACTTTGATGAGCAGGAGAATCTGGATGAATTTTGCAATGCCTCGGGGACAGAATTTGAGATTCCTGCAAACTTTGATGAGCAGGTGGTTGATTTTTATGATTGCAACATCGAGACTCACTGGCCAGGAACTTGA

Protein Analysis

367

Amino Acids

40.22

Weight (kDa)

4.94

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1039
Acc16I TGCGCA 1 cut(s) 807
Acc36I ACCTGC 1 cut(s) 1039
AccI GTMKAC 1 cut(s) 623
AccII CGCG 1 cut(s) 245
AciI CCGC 4 cut(s) 116, 243, 245, 345
AcoI YGGCCR 2 cut(s) 117, 1088
AcsI RAATTY 5 cut(s) 370, 447, 955, 995, 1019
AcuI CTGAAG 1 cut(s) 936
AfaI GTAC 1 cut(s) 69
AgsI TTSAA 5 cut(s) 375, 440, 517, 555, 960
AjnI CCWGG 1 cut(s) 1090
AluBI AGCT 8 cut(s) 22, 150, 205, 650, 757, 770, 914, 920
AluI AGCT 8 cut(s) 22, 150, 205, 650, 757, 770, 914, 920
Alw21I GWGCWC 2 cut(s) 152, 207
Alw26I GTCTC 5 cut(s) 330, 686, 724, 877, 1073
AlwNI CAGNNNCTG 2 cut(s) 25, 581
Ama87I CYCGRG 1 cut(s) 1009
AoxI GGCC 3 cut(s) 117, 644, 1088
ApeKI GCWGC 3 cut(s) 171, 767, 920
ApoI RAATTY 5 cut(s) 370, 447, 955, 995, 1019
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 5 cut(s) 133, 195, 229, 644, 653
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 3 cut(s) 22, 199, 902
AvaI CYCGRG 1 cut(s) 1009
AvaII GGWCC 4 cut(s) 133, 195, 229, 653
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BalI TGGCCA 1 cut(s) 1090
BanII GRGCYC 2 cut(s) 152, 207
Bbv12I GWGCWC 2 cut(s) 152, 207
BbvI GCAGC 3 cut(s) 158, 779, 907
BccI CCATC 3 cut(s) 218, 554, 950
BciT130I CCWGG 1 cut(s) 1092
BciVI GTATCC 1 cut(s) 856
BcnI CCSGG 1 cut(s) 818
BcoDI GTCTC 5 cut(s) 330, 686, 724, 877, 1073
BfaI CTAG 3 cut(s) 315, 332, 812
BfmI CTRYAG 1 cut(s) 765
BfuAI ACCTGC 1 cut(s) 1039
BfuI GTATCC 1 cut(s) 856
BglII AGATCT 2 cut(s) 659, 712
BisI GCNGC 4 cut(s) 117, 172, 768, 921
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 4 cut(s) 118, 173, 769, 922
Bme1390I CCNGG 2 cut(s) 818, 1092
Bme18I GGWCC 4 cut(s) 133, 195, 229, 653
BmeT110I CYCGRG 1 cut(s) 1009
BmgT120I GGNCC 5 cut(s) 133, 195, 229, 644, 653
BmiI GGNNCC 3 cut(s) 134, 410, 645
BmrFI CCNGG 2 cut(s) 818, 1092
BmrI ACTGGG 1 cut(s) 896
BmsI GCATC 4 cut(s) 404, 422, 518, 817
BmuI ACTGGG 1 cut(s) 896
BpmI CTGGAG 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 818
BsaAI YACGTR 1 cut(s) 590
BsaI GGTCTC 2 cut(s) 686, 724
BsaJI CCNNGG 2 cut(s) 243, 1008
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 4 cut(s) 63, 198, 891, 1091
Bse3DI GCAATG 3 cut(s) 639, 852, 1009
BseBI CCWGG 1 cut(s) 1092
BseDI CCNNGG 2 cut(s) 243, 1008
BseGI GGATG 4 cut(s) 489, 826, 942, 997
BseMI GCAATG 3 cut(s) 639, 852, 1009
BseMII CTCAG 5 cut(s) 32, 312, 491, 744, 872
BseNI ACTGG 4 cut(s) 63, 198, 891, 1091
BseRI GAGGAG 3 cut(s) 160, 854, 867
BseXI GCAGC 3 cut(s) 158, 779, 907
BseYI CCCAGC 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 3 cut(s) 119, 646, 1090
BsiHKAI GWGCWC 2 cut(s) 152, 207
BsiHKCI CYCGRG 1 cut(s) 1009
BsiSI CCGG 2 cut(s) 71, 818
BslFI GGGAC 3 cut(s) 101, 146, 1027
BsmAI GTCTC 5 cut(s) 330, 686, 724, 877, 1073
BsmFI GGGAC 3 cut(s) 101, 146, 1027
BsnI GGCC 3 cut(s) 119, 646, 1090
Bso31I GGTCTC 2 cut(s) 686, 724
BsoBI CYCGRG 1 cut(s) 1009
Bsp1286I GDGCHC 2 cut(s) 152, 207
Bsp143I GATC 3 cut(s) 52, 659, 712
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 4 cut(s) 116, 243, 245, 345
BspANI GGCC 3 cut(s) 119, 646, 1090
BspCNI CTCAG 5 cut(s) 31, 313, 490, 745, 873
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 3 cut(s) 134, 410, 645
BspMAI CTGCAG 1 cut(s) 769
BspMI ACCTGC 1 cut(s) 1039
BspTNI GGTCTC 2 cut(s) 686, 724
BsrDI GCAATG 3 cut(s) 639, 852, 1009
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 4 cut(s) 63, 198, 891, 1091
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 243, 1008
BssMI GATC 3 cut(s) 52, 659, 712
Bst2UI CCWGG 1 cut(s) 1092
Bst4CI ACNGT 2 cut(s) 504, 964
Bst6I CTCTTC 1 cut(s) 819
BstAPI GCANNNNNTGC 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 590
BstC8I GCNNGC 3 cut(s) 30, 267, 648
BstDEI CTNAG 5 cut(s) 18, 321, 477, 753, 881
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 4 cut(s) 489, 826, 942, 997
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 3 cut(s) 55, 662, 715
BstMAI GTCTC 5 cut(s) 330, 686, 724, 877, 1073
BstMBI GATC 3 cut(s) 52, 659, 712
BstMWI GCNNNNNNNGC 4 cut(s) 116, 271, 643, 920
BstNI CCWGG 1 cut(s) 1092
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 816, 1090
BstSFI CTRYAG 1 cut(s) 765
BstSNI TACGTA 1 cut(s) 590
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 3 cut(s) 158, 779, 907
BstX2I RGATCY 2 cut(s) 659, 712
BstXI CCANNNNNNTGG 2 cut(s) 859, 949
BstYI RGATCY 2 cut(s) 659, 712
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 3 cut(s) 119, 646, 1090
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 4 cut(s) 489, 826, 942, 997
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 205, 276, 1084
BveI ACCTGC 1 cut(s) 1039
Cac8I GCNNGC 3 cut(s) 30, 267, 648
CaiI CAGNNNCTG 2 cut(s) 25, 581
CfoI GCGC 1 cut(s) 808
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 5 cut(s) 133, 195, 229, 644, 653
Cfr42I CCGCGG 1 cut(s) 246
CseI GACGC 1 cut(s) 626
Csp6I GTAC 1 cut(s) 68
CviAII CATG 3 cut(s) 65, 121, 685
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 5 cut(s) 18, 321, 477, 753, 881
DpnI GATC 3 cut(s) 54, 661, 714
DpnII GATC 3 cut(s) 52, 659, 712
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 2 cut(s) 117, 1088
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
Ecl136II GAGCTC 2 cut(s) 150, 205
Eco105I TACGTA 1 cut(s) 590
Eco24I GRGCYC 2 cut(s) 152, 207
Eco31I GGTCTC 2 cut(s) 686, 724
Eco47I GGWCC 4 cut(s) 133, 195, 229, 653
Eco53kI GAGCTC 2 cut(s) 150, 205
Eco57I CTGAAG 1 cut(s) 936
Eco88I CYCGRG 1 cut(s) 1009
EcoICRI GAGCTC 2 cut(s) 150, 205
EcoRI GAATTC 1 cut(s) 955
EcoRII CCWGG 1 cut(s) 1090
EcoT38I GRGCYC 2 cut(s) 152, 207
FaeI CATG 3 cut(s) 68, 124, 688
FaiI YATR 9 cut(s) 66, 122, 164, 299, 353, 686, 902, 938, 1065
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 3 cut(s) 101, 146, 1027
FatI CATG 3 cut(s) 64, 120, 684
FauI CCCGC 2 cut(s) 250, 338
FblI GTMKAC 1 cut(s) 623
Fnu4HI GCNGC 4 cut(s) 117, 172, 768, 921
FokI GGATG 4 cut(s) 496, 833, 929, 1004
FriOI GRGCYC 2 cut(s) 152, 207
Fsp4HI GCNGC 4 cut(s) 117, 172, 768, 921
FspAI RTGCGCAY 1 cut(s) 807
FspBI CTAG 3 cut(s) 315, 332, 812
FspI TGCGCA 1 cut(s) 807
GlaI GCGC 1 cut(s) 807
GluI GCNGC 4 cut(s) 117, 172, 768, 921
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 3 cut(s) 119, 646, 1090
HapII CCGG 2 cut(s) 71, 818
HgaI GACGC 1 cut(s) 626
HhaI GCGC 1 cut(s) 808
Hin1II CATG 3 cut(s) 68, 124, 688
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HinfI GANTC 9 cut(s) 89, 166, 323, 524, 551, 578, 985, 1027, 1081
HpaI GTTAAC 1 cut(s) 967
HpaII CCGG 2 cut(s) 71, 818
HphI GGTGA 3 cut(s) 22, 199, 902
Hpy166II GTNNAC 4 cut(s) 13, 232, 624, 967
Hpy188I TCNGA 6 cut(s) 94, 144, 195, 322, 480, 882
Hpy188III TCNNGA 9 cut(s) 153, 254, 366, 384, 540, 575, 812, 989, 1078
Hpy8I GTNNAC 4 cut(s) 13, 232, 624, 967
Hpy99I CGWCG 1 cut(s) 642
HpyAV CCTTC 5 cut(s) 77, 92, 198, 226, 511
HpyCH4III ACNGT 2 cut(s) 504, 964
HpyCH4IV ACGT 2 cut(s) 234, 589
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 271, 643, 920
HpyF3I CTNAG 5 cut(s) 18, 321, 477, 753, 881
HpySE526I ACGT 2 cut(s) 234, 589
Hsp92II CATG 3 cut(s) 68, 124, 688
HspAI GCGC 1 cut(s) 806
KspAI GTTAAC 1 cut(s) 967
KspI CCGCGG 1 cut(s) 246
Kzo9I GATC 3 cut(s) 52, 659, 712
LmnI GCTCC 1 cut(s) 147
Lsp1109I GCAGC 3 cut(s) 158, 779, 907
LweI GCATC 4 cut(s) 404, 422, 518, 817
MaeI CTAG 3 cut(s) 315, 332, 812
MaeII ACGT 2 cut(s) 234, 589
MaeIII GTNAC 3 cut(s) 157, 247, 890
MalI GATC 3 cut(s) 54, 661, 714
MboI GATC 3 cut(s) 52, 659, 712
MboII GAAGA 3 cut(s) 62, 399, 836
MflI RGATCY 2 cut(s) 659, 712
MhlI GDGCHC 2 cut(s) 152, 207
MlsI TGGCCA 1 cut(s) 1090
MluCI AATT 8 cut(s) 175, 370, 447, 531, 609, 955, 995, 1019
MluNI TGGCCA 1 cut(s) 1090
MlyI GAGTC 4 cut(s) 83, 175, 332, 1075
MmeI TCCRAC 1 cut(s) 60
Mox20I TGGCCA 1 cut(s) 1090
MscI TGGCCA 1 cut(s) 1090
MseI TTAA 3 cut(s) 777, 791, 966
MslI CAYNNNNRTG 1 cut(s) 947
Msp20I TGGCCA 1 cut(s) 1090
MspA1I CMGCKG 4 cut(s) 245, 650, 770, 914
MspI CCGG 2 cut(s) 71, 818
MspR9I CCNGG 2 cut(s) 818, 1092
MvaI CCWGG 1 cut(s) 1092
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 116, 271, 643, 920
NciI CCSGG 1 cut(s) 818
NdeII GATC 3 cut(s) 52, 659, 712
NlaIII CATG 3 cut(s) 68, 124, 688
NlaIV GGNNCC 3 cut(s) 134, 410, 645
NmuCI GTSAC 1 cut(s) 890
NsbI TGCGCA 1 cut(s) 807
NspI RCATGY 1 cut(s) 68
PaqCI CACCTGC 1 cut(s) 1039
PfeI GAWTC 5 cut(s) 524, 551, 578, 985, 1027
PkrI GCNGC 4 cut(s) 118, 173, 769, 922
PleI GAGTC 4 cut(s) 83, 174, 331, 1075
PpsI GAGTC 4 cut(s) 83, 174, 331, 1075
Ppu21I YACGTR 1 cut(s) 590
Psp124BI GAGCTC 2 cut(s) 152, 207
Psp6I CCWGG 1 cut(s) 1090
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 1090
PspN4I GGNNCC 3 cut(s) 134, 410, 645
PspPI GGNCC 5 cut(s) 133, 195, 229, 644, 653
PstI CTGCAG 1 cut(s) 769
PstNI CAGNNNCTG 2 cut(s) 25, 581
PsuI RGATCY 2 cut(s) 659, 712
PvuII CAGCTG 3 cut(s) 650, 770, 914
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 947
SacI GAGCTC 2 cut(s) 152, 207
SacII CCGCGG 1 cut(s) 246
SaqAI TTAA 3 cut(s) 777, 791, 966
SatI GCNGC 4 cut(s) 117, 172, 768, 921
Sau3AI GATC 3 cut(s) 52, 659, 712
Sau96I GGNCC 5 cut(s) 133, 195, 229, 644, 653
SchI GAGTC 4 cut(s) 83, 175, 332, 1075
ScrFI CCNGG 2 cut(s) 818, 1092
SduI GDGCHC 2 cut(s) 152, 207
SfaNI GCATC 4 cut(s) 404, 422, 518, 817
SfcI CTRYAG 1 cut(s) 765
Sfr303I CCGCGG 1 cut(s) 246
SgrBI CCGCGG 1 cut(s) 246
SinI GGWCC 4 cut(s) 133, 195, 229, 653
SmiMI CAYNNNNRTG 1 cut(s) 947
SnaBI TACGTA 1 cut(s) 590
Sse9I AATT 8 cut(s) 175, 370, 447, 531, 609, 955, 995, 1019
SsiI CCGC 4 cut(s) 116, 243, 245, 345
SspMI CTAG 3 cut(s) 315, 332, 812
SstI GAGCTC 2 cut(s) 152, 207
StyD4I CCNGG 2 cut(s) 816, 1090
TaaI ACNGT 2 cut(s) 504, 964
TaiI ACGT 2 cut(s) 237, 592
TaqI TCGA 4 cut(s) 219, 451, 463, 1077
TasI AATT 8 cut(s) 175, 370, 447, 531, 609, 955, 995, 1019
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 5 cut(s) 524, 551, 578, 985, 1027
Tru1I TTAA 3 cut(s) 777, 791, 966
Tru9I TTAA 3 cut(s) 777, 791, 966
TscAI CASTG 3 cut(s) 205, 276, 1091
TseFI GTSAC 1 cut(s) 890
TseI GCWGC 3 cut(s) 171, 767, 920
Tsp45I GTSAC 1 cut(s) 890
TspDTI ATGAA 4 cut(s) 137, 728, 837, 1008
TspGWI ACGGA 2 cut(s) 401, 436
TspRI CASTG 3 cut(s) 205, 276, 1091
VpaK11BI GGWCC 4 cut(s) 133, 195, 229, 653
XapI RAATTY 5 cut(s) 370, 447, 955, 995, 1019
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 623
XspI CTAG 3 cut(s) 315, 332, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.