Rmu_sc0002239.1_g000019

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002239.1
Physical Location & Seq
Reverse (-)
67308 .. 71250
3943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002239.1_g000019.1.cds

Sequence Viewer

Length: 1068 bp
atggcggccgtgaatccacagcctctgcaagcgcgtcgtccgtacgaggaccacgtggcggcgggttcgtttcagatggaggacgatgagggcggcgagtacgaagacggtggcggcgacgaggctattatggaggaggaggaggaagaggaggttcacgcgagctcggcggcggcgcgtgggggagtgagtgtgcttacggcggcgacgaggactagtgagctcactctctcttttgaaggcgaggtttatgtgtttcctgccgttacgccccagaaggtacaagcagtgctattgctgttgggaggacgtgatgcaccaactggcgttcctagggttgaaatgtcttacgatcagaatacaaggggtgtgggtgacaccccaaagcgttcaaatctttcccgaagaatagcttcccttgttagatttcgtgagaaacggaaggagaggtgttttgacaagaaaattaggtacactgtgcgtaaagaggttgcacagagaatgcaccgtaagaatggacagttcgcatcgttaaaagaaaattctagcggttctggttgggactcggcacaaagttcccttcaagatggcactcctcgacctgaaactgtcttacgaagatgtcaacactgtggagttagtgaaaataatactcctgctatgcgccgagggcctgctggtccaagaactttatgtaatgcttgtggacttatgtgggcgaataagggaacattgagagatctcagcaagggaggaaggaacctttccatggaccacattgaacctggaacaccacttgaaatcaagccttcaatagttgaatgtgaattctctggcaaccaggatgggcatggagctcgtgaagatccttctaaatcagtcattgaaggttccaatgatgcttctgtcaacctggatgtggaaaattttcaagaatctgccgaggatcttacaaacgctttgcctatgggaattgtttcctcaaccaatgatgttgagcaggagcctctgcttgagctcactaatacttcagatacagatttagacatccctactaattttgattag

Protein Analysis

355

Amino Acids

38.76

Weight (kDa)

4.89

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 34, 161, 178
AciI CCGC 9 cut(s) 5, 59, 62, 93, 114, 170, 173, 203, 549
AclWI GGATC 2 cut(s) 860, 954
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 541, 827, 925
AcuI CTGAAG 1 cut(s) 1014
AcvI CACGTG 1 cut(s) 55
AfaI GTAC 4 cut(s) 44, 101, 282, 473
AfiI CCNNNNNNNGG 3 cut(s) 58, 769, 919
AhlI ACTAGT 1 cut(s) 215
AjiI CACGTC 1 cut(s) 311
AjnI CCWGG 3 cut(s) 784, 840, 912
AluBI AGCT 5 cut(s) 165, 223, 413, 857, 1018
AluI AGCT 5 cut(s) 165, 223, 413, 857, 1018
Alw21I GWGCWC 4 cut(s) 167, 225, 859, 1020
AlwI GGATC 2 cut(s) 860, 954
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 2 cut(s) 6, 671
ApoI RAATTY 3 cut(s) 541, 827, 925
Asp700I GAANNNNTTC 3 cut(s) 412, 927, 976
AspA2I CCTAGG 1 cut(s) 332
AspLEI GCGC 3 cut(s) 34, 178, 666
AspS9I GGNCC 4 cut(s) 49, 671, 680, 772
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 3 cut(s) 49, 680, 772
AvrII CCTAGG 1 cut(s) 332
BanII GRGCYC 4 cut(s) 167, 225, 859, 1020
BauI CACGAG 1 cut(s) 858
BbrPI CACGTG 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 4 cut(s) 167, 225, 859, 1020
BccI CCATC 3 cut(s) 70, 581, 839
BceAI ACGGC 2 cut(s) 216, 248
BcgI CGANNNNNNTGC 4 cut(s) 17, 51, 839, 873
BciT130I CCWGG 3 cut(s) 786, 842, 914
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 3 cut(s) 216, 333, 546
BglII AGATCT 1 cut(s) 739
BisI GCNGC 7 cut(s) 6, 60, 94, 115, 171, 174, 204
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 7 cut(s) 7, 61, 95, 116, 172, 175, 205
Bme1390I CCNGG 3 cut(s) 786, 842, 914
Bme18I GGWCC 3 cut(s) 49, 680, 772
BmgBI CACGTC 1 cut(s) 311
BmgT120I GGNCC 4 cut(s) 49, 671, 680, 772
BmiI GGNNCC 3 cut(s) 761, 892, 1005
BmrFI CCNGG 3 cut(s) 786, 842, 914
BmsI GCATC 3 cut(s) 304, 536, 889
BpiI GAAGAC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 1034
BsaAI YACGTR 1 cut(s) 55
BsaJI CCNNGG 4 cut(s) 332, 667, 768, 942
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 769, 919
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 3 cut(s) 786, 842, 914
BseDI CCNNGG 4 cut(s) 332, 667, 768, 942
BseGI GGATG 3 cut(s) 850, 922, 1047
BseLI CCNNNNNNNGG 3 cut(s) 58, 769, 919
BseMII CTCAG 1 cut(s) 757
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 5 cut(s) 149, 152, 155, 164, 585
BseX3I CGGCCG 1 cut(s) 6
Bsh1236I CGCG 3 cut(s) 34, 161, 178
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 673
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 4 cut(s) 167, 225, 859, 1020
BsiWI CGTACG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 3 cut(s) 58, 769, 919
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 1 cut(s) 507
BsnI GGCC 2 cut(s) 8, 673
Bsp1286I GDGCHC 4 cut(s) 167, 225, 859, 1020
Bsp143I GATC 4 cut(s) 352, 739, 865, 946
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 9 cut(s) 5, 59, 62, 93, 114, 170, 173, 203, 549
BspANI GGCC 2 cut(s) 8, 673
BspCNI CTCAG 1 cut(s) 756
BspFNI CGCG 3 cut(s) 34, 161, 178
BspLI GGNNCC 3 cut(s) 761, 892, 1005
BspPI GGATC 2 cut(s) 860, 954
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 4 cut(s) 332, 667, 768, 942
BssMI GATC 4 cut(s) 352, 739, 865, 946
BssSI CACGAG 1 cut(s) 858
BssT1I CCWWGG 2 cut(s) 332, 768
Bst2BI CACGAG 1 cut(s) 858
Bst2UI CCWGG 3 cut(s) 786, 842, 914
Bst4CI ACNGT 6 cut(s) 110, 478, 509, 522, 610, 632
Bst6I CTCTTC 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 3 cut(s) 30, 163, 675
BstDEI CTNAG 1 cut(s) 743
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 3 cut(s) 850, 922, 1047
BstFNI CGCG 3 cut(s) 34, 161, 178
BstHHI GCGC 3 cut(s) 34, 178, 666
BstKTI GATC 4 cut(s) 355, 742, 868, 949
BstMBI GATC 4 cut(s) 352, 739, 865, 946
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 167, 670
BstNI CCWGG 3 cut(s) 786, 842, 914
BstSCI CCNGG 3 cut(s) 784, 840, 912
BstUI CGCG 3 cut(s) 34, 161, 178
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 3 cut(s) 739, 865, 946
BstYI RGATCY 3 cut(s) 739, 865, 946
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 673
BtgI CCRYGG 1 cut(s) 768
BtrI CACGTC 1 cut(s) 311
BtsCI GGATG 3 cut(s) 850, 922, 1047
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 3 cut(s) 294, 474, 628
Cac8I GCNNGC 3 cut(s) 30, 163, 675
CaiI CAGNNNCTG 1 cut(s) 25
CfoI GCGC 3 cut(s) 34, 178, 666
Cfr13I GGNCC 4 cut(s) 49, 671, 680, 772
CseI GACGC 1 cut(s) 23
Csp6I GTAC 4 cut(s) 43, 100, 281, 472
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 2 cut(s) 769, 851
CviQI GTAC 4 cut(s) 43, 100, 281, 472
DdeI CTNAG 1 cut(s) 743
DpnI GATC 4 cut(s) 354, 741, 867, 948
DpnII GATC 4 cut(s) 352, 739, 865, 946
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Ecl136II GAGCTC 4 cut(s) 165, 223, 857, 1018
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 332, 768
Eco24I GRGCYC 4 cut(s) 167, 225, 859, 1020
Eco47I GGWCC 3 cut(s) 49, 680, 772
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 4 cut(s) 165, 223, 857, 1018
Eco57I CTGAAG 1 cut(s) 1014
Eco72I CACGTG 1 cut(s) 55
EcoICRI GAGCTC 4 cut(s) 165, 223, 857, 1018
EcoO109I RGGNCCY 1 cut(s) 671
EcoRI GAATTC 1 cut(s) 827
EcoRII CCWGG 3 cut(s) 784, 840, 912
EcoT14I CCWWGG 2 cut(s) 332, 768
EcoT38I GRGCYC 4 cut(s) 167, 225, 859, 1020
ErhI CCWWGG 2 cut(s) 332, 768
FaeI CATG 2 cut(s) 772, 854
FaiI YATR 8 cut(s) 131, 252, 662, 694, 713, 770, 852, 968
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FaqI GGGAC 1 cut(s) 575
FatI CATG 2 cut(s) 768, 850
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 7 cut(s) 6, 60, 94, 115, 171, 174, 204
FokI GGATG 3 cut(s) 857, 929, 1034
FriOI GRGCYC 4 cut(s) 167, 225, 859, 1020
Fsp4HI GCNGC 7 cut(s) 6, 60, 94, 115, 171, 174, 204
FspBI CTAG 3 cut(s) 216, 333, 546
GlaI GCGC 3 cut(s) 33, 177, 665
GluI GCNGC 7 cut(s) 6, 60, 94, 115, 171, 174, 204
HaeIII GGCC 2 cut(s) 8, 673
HgaI GACGC 1 cut(s) 23
HhaI GCGC 3 cut(s) 34, 178, 666
Hin1II CATG 2 cut(s) 772, 854
Hin6I GCGC 3 cut(s) 32, 176, 664
HinP1I GCGC 3 cut(s) 32, 176, 664
HincII GTYRAC 2 cut(s) 626, 910
HindII GTYRAC 2 cut(s) 626, 910
HinfI GANTC 3 cut(s) 13, 563, 935
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 5 cut(s) 157, 474, 626, 707, 910
Hpy188I TCNGA 3 cut(s) 75, 357, 1033
Hpy188III TCNNGA 5 cut(s) 402, 431, 584, 860, 932
Hpy8I GTNNAC 5 cut(s) 157, 474, 626, 707, 910
Hpy99I CGWCG 3 cut(s) 39, 122, 211
HpyAV CCTTC 8 cut(s) 233, 271, 436, 590, 750, 819, 879, 881
HpyCH4III ACNGT 6 cut(s) 110, 478, 509, 522, 610, 632
HpyCH4IV ACGT 2 cut(s) 54, 310
HpyCH4V TGCA 4 cut(s) 28, 317, 494, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 670
HpyF3I CTNAG 1 cut(s) 743
HpySE526I ACGT 2 cut(s) 54, 310
Hsp92II CATG 2 cut(s) 772, 854
HspAI GCGC 3 cut(s) 32, 176, 664
Kzo9I GATC 4 cut(s) 352, 739, 865, 946
LmnI GCTCC 2 cut(s) 854, 1003
LweI GCATC 3 cut(s) 304, 536, 889
MaeI CTAG 3 cut(s) 216, 333, 546
MaeII ACGT 2 cut(s) 54, 310
MaeIII GTNAC 2 cut(s) 265, 374
MalI GATC 4 cut(s) 354, 741, 867, 948
MboI GATC 4 cut(s) 352, 739, 865, 946
MboII GAAGA 5 cut(s) 116, 158, 417, 630, 875
MflI RGATCY 3 cut(s) 739, 865, 946
MhlI GDGCHC 4 cut(s) 167, 225, 859, 1020
MluCI AATT 6 cut(s) 465, 541, 827, 925, 972, 1057
MlyI GAGTC 1 cut(s) 557
MroXI GAANNNNTTC 3 cut(s) 412, 927, 976
MseI TTAA 1 cut(s) 533
MspR9I CCNGG 3 cut(s) 786, 842, 914
Mva1269I GAATGC 1 cut(s) 507
MvaI CCWGG 3 cut(s) 786, 842, 914
MvnI CGCG 3 cut(s) 34, 161, 178
MwoI GCNNNNNNNGC 2 cut(s) 167, 670
NcoI CCATGG 1 cut(s) 768
NdeII GATC 4 cut(s) 352, 739, 865, 946
NlaIII CATG 2 cut(s) 772, 854
NlaIV GGNNCC 3 cut(s) 761, 892, 1005
NmeAIII GCCGAG 4 cut(s) 146, 545, 692, 967
NmuCI GTSAC 1 cut(s) 374
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 114, 206
PctI GAATGC 1 cut(s) 507
PdmI GAANNNNTTC 3 cut(s) 412, 927, 976
PfeI GAWTC 2 cut(s) 13, 935
Pfl23II CGTACG 1 cut(s) 42
PkrI GCNGC 7 cut(s) 7, 61, 95, 116, 172, 175, 205
PleI GAGTC 1 cut(s) 557
PmaCI CACGTG 1 cut(s) 55
PmlI CACGTG 1 cut(s) 55
PpsI GAGTC 1 cut(s) 557
Ppu21I YACGTR 1 cut(s) 55
Psp124BI GAGCTC 4 cut(s) 167, 225, 859, 1020
Psp6I CCWGG 3 cut(s) 784, 840, 912
PspCI CACGTG 1 cut(s) 55
PspGI CCWGG 3 cut(s) 784, 840, 912
PspLI CGTACG 1 cut(s) 42
PspN4I GGNNCC 3 cut(s) 761, 892, 1005
PspPI GGNCC 4 cut(s) 49, 671, 680, 772
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 3 cut(s) 739, 865, 946
RsaI GTAC 4 cut(s) 44, 101, 282, 473
RsaNI GTAC 4 cut(s) 43, 100, 281, 472
SacI GAGCTC 4 cut(s) 167, 225, 859, 1020
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 7 cut(s) 6, 60, 94, 115, 171, 174, 204
Sau3AI GATC 4 cut(s) 352, 739, 865, 946
Sau96I GGNCC 4 cut(s) 49, 671, 680, 772
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 3 cut(s) 786, 842, 914
SduI GDGCHC 4 cut(s) 167, 225, 859, 1020
SfaNI GCATC 3 cut(s) 304, 536, 889
SinI GGWCC 3 cut(s) 49, 680, 772
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 6 cut(s) 465, 541, 827, 925, 972, 1057
SsiI CCGC 9 cut(s) 5, 59, 62, 93, 114, 170, 173, 203, 549
SspMI CTAG 3 cut(s) 216, 333, 546
SstI GAGCTC 4 cut(s) 167, 225, 859, 1020
StyD4I CCNGG 3 cut(s) 784, 840, 912
StyI CCWWGG 2 cut(s) 332, 768
TaaI ACNGT 6 cut(s) 110, 478, 509, 522, 610, 632
TaiI ACGT 2 cut(s) 57, 313
TaqI TCGA 1 cut(s) 598
TasI AATT 6 cut(s) 465, 541, 827, 925, 972, 1057
TauI GCSGC 7 cut(s) 8, 62, 96, 117, 173, 176, 206
TfiI GAWTC 2 cut(s) 13, 935
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 3 cut(s) 294, 481, 635
TseFI GTSAC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 374
TspGWI ACGGA 2 cut(s) 30, 454
TspRI CASTG 3 cut(s) 294, 481, 635
VpaK11BI GGWCC 3 cut(s) 49, 680, 772
XapI RAATTY 3 cut(s) 541, 827, 925
XcmI CCANNNNNNNNNTGG 2 cut(s) 782, 848
XmaJI CCTAGG 1 cut(s) 332
XmnI GAANNNNTTC 3 cut(s) 412, 927, 976
XspI CTAG 3 cut(s) 216, 333, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.