Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Reverse (-)

61928045 .. 61933360

Gene Structure 5316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG463600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGCCGTGAATCCACAGCCTCTGCAAGCGCGTCGTCCGTACGAGGACCACGTGGCGGCGGGTTCGTTTCAGATGGAGGACGATGAGGGCGGCGAGTACGAAGACGGTGGCGGCGACGAGGCTATTATGGAGGAGGACGAAGAGGAGGTTCACGCGAGCTCGGCGGCTGCGGCGGCGGCGCGTGGGGGAGTGAGTGTGCTTACGGCGGCGACGAGGACTAGTGAGCTCACTCTCTCTTTTGAAGGCGAGGTTTATGTGTTTCCTGCCGTTACGCCCCAGAAGGTACAAGCAGTGCTATTGCTGTTGGGAGGACGTGATGCACCAACTGGCGTTCCTAGGGTTGAAATGTCTTACGATCAGAATACAAGGGGTGTGGGGGACACCCCAAAGCGTTCGAATCTTTCCCGAAGAATAGCTTCCCTTGTTAGATTTCGTGAGAAACGGAAGGAGAGGTGTTTTGACAAGAAAATTAGGTACACTGTGCGTAAAGAGGTTGCACAGAGAATGCATCGTAAGAATGGACAGTTCGCATCGTTAAAAGAAAATTCTAGCGGTTCTGGTTGGGACTCGGCACAAAGTTCCCTTCAAGATGGCACTCCTCGACCTGAAACTGTCTTACGAAGATGTCAACACTGTGGAGTTGGTGAAAATAATACTCCTGCTATGCGCCGTGGGCCTGCTGGTCCAAGAACTTTATGTAATGCTTGTGGACTTATGTGGGCGAATAAGGTTGGTTTATTTTGCTTTCATAATTGGATAAGATGCTCATTGCCGGAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

261

Amino Acids

28.66

Weight (kDa)

7.61

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	74 - 104	1.2e-09	tify domain
CCT	PF06203	138 - 179	4.7e-14	CCT motif
Jas_motif	PF09425	138 - 160	4.7e-07	Jas motif
GATA	PF00320	210 - 244	3e-11	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	34, 158, 184
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	547
AcvI	CACGTG	1 cut(s)	55
AfaI	GTAC	4 cut(s)	44, 101, 288, 479
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	245, 347, 590
AhlI	ACTAGT	1 cut(s)	221
AjiI	CACGTC	1 cut(s)	317
AluBI	AGCT	3 cut(s)	162, 229, 419
AluI	AGCT	3 cut(s)	162, 229, 419
Alw21I	GWGCWC	2 cut(s)	164, 231
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	6, 677
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	547
Asp700I	GAANNNNTTC	1 cut(s)	418
AspA2I	CCTAGG	1 cut(s)	338
AspLEI	GCGC	3 cut(s)	34, 184, 672
AspS9I	GGNCC	3 cut(s)	49, 677, 686
AsuHPI	GGTGA	1 cut(s)	659
AsuII	TTCGAA	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	49, 686
AvrII	CCTAGG	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	164, 231
BbrPI	CACGTG	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	164, 231
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	70, 587
BceAI	ACGGC	3 cut(s)	222, 254, 657
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	3 cut(s)	222, 339, 552
BlnI	CCTAGG	1 cut(s)	338
Bme18I	GGWCC	2 cut(s)	49, 686
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	49, 677, 686
BmsI	GCATC	4 cut(s)	310, 520, 542, 755
BpiI	GAAGAC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	338, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	770
BseDI	CCNNGG	2 cut(s)	338, 673
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	770
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	3 cut(s)	149, 161, 591
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	3 cut(s)	34, 158, 184
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	8, 679
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	164, 231
BsiSI	CCGG	1 cut(s)	776
BsiWI	CGTACG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	395, 581
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	395, 581
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	8, 679
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	164, 231
Bsp143I	GATC	1 cut(s)	358
BspANI	GGCC	2 cut(s)	8, 679
BspFNI	CGCG	3 cut(s)	34, 158, 184
BspT104I	TTCGAA	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	770
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	338, 673
BssMI	GATC	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	5 cut(s)	110, 484, 528, 616, 638
Bst6I	CTCTTC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	30, 160, 681
BstDSI	CCRYGG	1 cut(s)	673
BstFNI	CGCG	3 cut(s)	34, 158, 184
BstHHI	GCGC	3 cut(s)	34, 184, 672
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 173, 176, 179, 676
BstUI	CGCG	3 cut(s)	34, 158, 184
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	111
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	8, 679
BtgI	CCRYGG	1 cut(s)	673
BtrI	CACGTC	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	300, 480, 634
Cac8I	GCNNGC	3 cut(s)	30, 160, 681
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	3 cut(s)	34, 184, 672
Cfr13I	GGNCC	3 cut(s)	49, 677, 686
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	4 cut(s)	43, 100, 287, 478
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviJI	RGCY	8 cut(s)	8, 22, 125, 162, 170, 229, 419, 679
CviKI_1	RGCY	8 cut(s)	8, 22, 125, 162, 170, 229, 419, 679
CviQI	GTAC	4 cut(s)	43, 100, 287, 478
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	2 cut(s)	162, 229
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	2 cut(s)	164, 231
Eco47I	GGWCC	2 cut(s)	49, 686
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	2 cut(s)	162, 229
Eco72I	CACGTG	1 cut(s)	55
EcoICRI	GAGCTC	2 cut(s)	162, 229
EcoT14I	CCWWGG	1 cut(s)	338
EcoT22I	ATGCAT	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	164, 231
ErhI	CCWWGG	1 cut(s)	338
FaiI	YATR	7 cut(s)	131, 258, 668, 700, 719, 753, 784
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	2 cut(s)	395, 581
FauI	CCCGC	1 cut(s)	55
FriOI	GRGCYC	2 cut(s)	164, 231
FspBI	CTAG	3 cut(s)	222, 339, 552
GlaI	GCGC	3 cut(s)	33, 183, 671
HaeIII	GGCC	2 cut(s)	8, 679
HapII	CCGG	1 cut(s)	776
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	3 cut(s)	34, 184, 672
Hin6I	GCGC	3 cut(s)	32, 182, 670
HinP1I	GCGC	3 cut(s)	32, 182, 670
HincII	GTYRAC	1 cut(s)	632
HindII	GTYRAC	1 cut(s)	632
HinfI	GANTC	4 cut(s)	13, 400, 569, 779
HpaII	CCGG	1 cut(s)	776
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	4 cut(s)	154, 480, 632, 713
Hpy188I	TCNGA	2 cut(s)	75, 363
Hpy188III	TCNNGA	3 cut(s)	408, 437, 590
Hpy8I	GTNNAC	4 cut(s)	154, 480, 632, 713
Hpy99I	CGWCG	3 cut(s)	39, 122, 217
HpyAV	CCTTC	4 cut(s)	239, 277, 442, 596
HpyCH4III	ACNGT	5 cut(s)	110, 484, 528, 616, 638
HpyCH4IV	ACGT	2 cut(s)	54, 316
HpyCH4V	TGCA	4 cut(s)	28, 323, 500, 511
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 173, 176, 179, 676
HpySE526I	ACGT	2 cut(s)	54, 316
HspAI	GCGC	3 cut(s)	32, 182, 670
Kzo9I	GATC	1 cut(s)	358
LpnPI	CCDG	8 cut(s)	279, 293, 315, 546, 621, 669, 675, 693
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	4 cut(s)	310, 520, 542, 755
MaeI	CTAG	3 cut(s)	222, 339, 552
MaeII	ACGT	2 cut(s)	54, 316
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	4 cut(s)	116, 155, 423, 636
MhlI	GDGCHC	2 cut(s)	164, 231
MluCI	AATT	3 cut(s)	471, 547, 754
MlyI	GAGTC	1 cut(s)	563
Mph1103I	ATGCAT	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	1 cut(s)	539
MspI	CCGG	1 cut(s)	776
Mva1269I	GAATGC	1 cut(s)	513
MvnI	CGCG	3 cut(s)	34, 158, 184
MwoI	GCNNNNNNNGC	5 cut(s)	164, 173, 176, 179, 676
NdeII	GATC	1 cut(s)	358
NmeAIII	GCCGAG	2 cut(s)	143, 551
NsiI	ATGCAT	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 114, 212
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	13, 400
Pfl23II	CGTACG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	563
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	563
Ppu21I	YACGTR	1 cut(s)	55
Psp124BI	GAGCTC	2 cut(s)	164, 231
PspCI	CACGTG	1 cut(s)	55
PspLI	CGTACG	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	49, 677, 686
PstNI	CAGNNNCTG	1 cut(s)	25
RsaI	GTAC	4 cut(s)	44, 101, 288, 479
RsaNI	GTAC	4 cut(s)	43, 100, 287, 478
SacI	GAGCTC	2 cut(s)	164, 231
SaqAI	TTAA	1 cut(s)	539
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	3 cut(s)	49, 677, 686
SchI	GAGTC	1 cut(s)	563
SduI	GDGCHC	2 cut(s)	164, 231
SfaNI	GCATC	4 cut(s)	310, 520, 542, 755
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	2 cut(s)	49, 686
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	3 cut(s)	471, 547, 754
SspMI	CTAG	3 cut(s)	222, 339, 552
SstI	GAGCTC	2 cut(s)	164, 231
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	5 cut(s)	110, 484, 528, 616, 638
TaiI	ACGT	2 cut(s)	57, 319
TaqI	TCGA	2 cut(s)	398, 604
TasI	AATT	3 cut(s)	471, 547, 754
TauI	GCSGC	9 cut(s)	8, 62, 96, 117, 170, 176, 179, 182, 212
TfiI	GAWTC	2 cut(s)	13, 400
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	3 cut(s)	300, 487, 641
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	740
TspGWI	ACGGA	2 cut(s)	30, 460
TspRI	CASTG	3 cut(s)	300, 487, 641
VpaK11BI	GGWCC	2 cut(s)	49, 686
XapI	RAATTY	1 cut(s)	547
XmaJI	CCTAGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	3 cut(s)	222, 339, 552
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.