Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

7422026 .. 7424989

Gene Structure 2964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21175.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATGATCTTCATGGAAGAAATGGTCGAATGCACATTGGTGTAGCGCAAAATCCAATGCATGTGCAGTATGAAGATCACGGTTTGCACCATATCGACAATGAAAACAGTATGATGGATGACCATGCTGATGGTGGGATGGATGAAGGAGTGGAGACAGACATTCCTTCTCACCCTGGAAACTCAGCTGATAATCGTGGTGAAGTTGTAGACCGTGGAATTGAAAATGGAGATCAATTGACATTGTCCTTCCAGGGACAAGTTTATGTTTTTGACCGTGTCTCGCCTGAGAAGGTTCAAGCTGTGCTTTTGTTACTTGGTGGAAGGGAAGTACCACATACACTCCCAACAACCCTAGGATCACCTCATCAGAACAATAGGGTACTGGGTCTATCTGGTACTCCTCAACGGCTTAGCGTTCCGCAGCGGTTAGCTTCTTTGCTCAGGTTTAGGGAGAAACGAAAAGGGAGGAACTTTGATAAGACTATTCGCTATACAGTCAGGAAAGAAGTAGCCTTGAGAATGCAGCGTAAGAAAGGTCAGTTCACGTCGGCTAAATCAAGCAATGATGATTCTGGATCCACTGGATCGGATTGGGGGTCAAACCAGAGCTGGGCCGTAGAAGGGACTGAGACTCAGAAGCCAGAGGTTTTATGTCGACACTGTGGAACAAGTGAGAAGTCAACTCCAATGATGCGACGTGGACCTGATGGGCCAAGAACACTTTGTAATGCGTGTGGACTGATGTGGGCAAACAAGGGGACTCTTAGAGACCTATCCAAAGTCCCTCCTCCGCAAACACCTCAGCATCTATCTCTGAATAAGAATGAGGACGCAAATCTTGAGGCTGATCAAATGATGGAAGTAACTGGTGACATTAGCAACACACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

297

Amino Acids

32.88

Weight (kDa)

6.31

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	78 - 107	3.8e-12	tify domain
Jas_motif	PF09425	140 - 163	2.9e-07	Jas motif
CCT	PF06203	141 - 183	8.6e-15	CCT motif
GATA	PF00320	217 - 253	4.6e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	210, 658
AciI	CCGC	3 cut(s)	422, 427, 794
AclWI	GGATC	4 cut(s)	367, 573, 586, 595
AdeI	CACNNNGTG	1 cut(s)	891
AfaI	GTAC	3 cut(s)	333, 384, 400
AfiI	CCNNNNNNNGG	2 cut(s)	613, 624
AgsI	TTSAA	2 cut(s)	224, 299
AjiI	CACGTC	2 cut(s)	549, 701
AjnI	CCWGG	2 cut(s)	175, 252
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	188, 302, 434, 612
AluI	AGCT	4 cut(s)	188, 302, 434, 612
Alw26I	GTCTC	4 cut(s)	149, 286, 626, 765
AlwI	GGATC	4 cut(s)	367, 573, 586, 595
AoxI	GGCC	2 cut(s)	615, 713
ApeKI	GCWGC	2 cut(s)	424, 526
AspA2I	CCTAGG	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	615, 704, 713
AsuHPI	GGTGA	4 cut(s)	164, 212, 354, 884
AvaII	GGWCC	1 cut(s)	704
AvrII	CCTAGG	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	578
BbvCI	CCTCAGC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	436, 538
BccI	CCATC	5 cut(s)	109, 125, 133, 704, 853
BceAI	ACGGC	2 cut(s)	425, 602
BciT130I	CCWGG	2 cut(s)	177, 254
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	4 cut(s)	149, 286, 626, 765
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	425, 527
BlnI	CCTAGG	1 cut(s)	355
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	2 cut(s)	426, 528
Bme1390I	CCNGG	2 cut(s)	177, 254
Bme18I	GGWCC	1 cut(s)	704
BmgBI	CACGTC	2 cut(s)	549, 701
BmgT120I	GGNCC	3 cut(s)	615, 704, 713
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	2 cut(s)	177, 254
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	684, 817
BmuI	ACTGGG	1 cut(s)	395
Bpu10I	CCTNAGC	2 cut(s)	443, 804
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	538, 863
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	4 cut(s)	175, 214, 253, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	613, 624
Bse1I	ACTGG	3 cut(s)	390, 589, 874
Bse3DI	GCAATG	1 cut(s)	571
BseBI	CCWGG	2 cut(s)	177, 254
BseDI	CCNNGG	4 cut(s)	175, 214, 253, 355
BseGI	GGATG	4 cut(s)	10, 124, 144, 148
BseLI	CCNNNNNNNGG	2 cut(s)	613, 624
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	6 cut(s)	198, 279, 457, 621, 650, 818
BseNI	ACTGG	3 cut(s)	390, 589, 874
BseRI	GAGGAG	2 cut(s)	393, 780
BseXI	GCAGC	2 cut(s)	436, 538
BseYI	CCCAGC	1 cut(s)	612
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	617, 715
BslFI	GGGAC	4 cut(s)	270, 640, 770, 775
BslI	CCNNNNNNNGG	2 cut(s)	613, 624
BsmAI	GTCTC	4 cut(s)	149, 286, 626, 765
BsmFI	GGGAC	4 cut(s)	270, 640, 770, 775
BsmI	GAATGC	2 cut(s)	36, 528
BsnI	GGCC	2 cut(s)	617, 715
Bso31I	GGTCTC	1 cut(s)	765
Bsp143I	GATC	7 cut(s)	7, 76, 232, 359, 578, 587, 850
Bsp1720I	GCTNAGC	1 cut(s)	413
BspACI	CCGC	3 cut(s)	422, 427, 794
BspANI	GGCC	2 cut(s)	617, 715
BspCNI	CTCAG	6 cut(s)	197, 280, 456, 622, 649, 817
BspLI	GGNNCC	1 cut(s)	580
BspPI	GGATC	4 cut(s)	367, 573, 586, 595
BspTNI	GGTCTC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	571
BsrI	ACTGG	3 cut(s)	390, 589, 874
BssECI	CCNNGG	4 cut(s)	175, 214, 253, 355
BssMI	GATC	7 cut(s)	7, 76, 232, 359, 578, 587, 850
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	177, 254
Bst4CI	ACNGT	7 cut(s)	83, 110, 215, 278, 499, 665, 891
BstDEI	CTNAG	8 cut(s)	184, 288, 413, 443, 630, 636, 767, 804
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	4 cut(s)	10, 124, 144, 148
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	7 cut(s)	10, 79, 235, 362, 581, 590, 853
BstMAI	GTCTC	4 cut(s)	149, 286, 626, 765
BstMBI	GATC	7 cut(s)	7, 76, 232, 359, 578, 587, 850
BstNI	CCWGG	2 cut(s)	177, 254
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	175, 252
BstV1I	GCAGC	2 cut(s)	436, 538
BstX2I	RGATCY	1 cut(s)	578
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	617, 715
BtgI	CCRYGG	1 cut(s)	214
BtrI	CACGTC	2 cut(s)	549, 701
BtsCI	GGATG	4 cut(s)	10, 124, 144, 148
BtsIMutI	CAGTG	2 cut(s)	582, 661
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	3 cut(s)	615, 704, 713
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	3 cut(s)	332, 383, 399
CviAII	CATG	3 cut(s)	14, 62, 125
CviQI	GTAC	3 cut(s)	332, 383, 399
DdeI	CTNAG	8 cut(s)	184, 288, 413, 443, 630, 636, 767, 804
DpnI	GATC	7 cut(s)	9, 78, 234, 361, 580, 589, 852
DpnII	GATC	7 cut(s)	7, 76, 232, 359, 578, 587, 850
DraIII	CACNNNGTG	1 cut(s)	891
Eco130I	CCWWGG	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	175, 252
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	3 cut(s)	17, 65, 128
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	4 cut(s)	270, 640, 770, 775
FatI	CATG	3 cut(s)	13, 61, 124
FbaI	TGATCA	1 cut(s)	850
FblI	GTMKAC	2 cut(s)	210, 658
Fnu4HI	GCNGC	2 cut(s)	425, 527
FokI	GGATG	4 cut(s)	17, 131, 151, 155
Fsp4HI	GCNGC	2 cut(s)	425, 527
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	425, 527
GsaI	CCCAGC	1 cut(s)	616
HaeIII	GGCC	2 cut(s)	617, 715
HgaI	GACGC	1 cut(s)	842
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	3 cut(s)	17, 65, 128
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	659, 684
HindII	GTYRAC	2 cut(s)	659, 684
HinfI	GANTC	3 cut(s)	572, 634, 763
HphI	GGTGA	4 cut(s)	164, 212, 354, 884
Hpy166II	GTNNAC	6 cut(s)	211, 546, 659, 684, 704, 740
Hpy188I	TCNGA	4 cut(s)	372, 592, 639, 819
Hpy188III	TCNNGA	3 cut(s)	502, 576, 842
Hpy8I	GTNNAC	6 cut(s)	211, 546, 659, 684, 704, 740
Hpy99I	CGWCG	2 cut(s)	553, 702
HpyAV	CCTTC	6 cut(s)	140, 177, 259, 286, 318, 617
HpyCH4III	ACNGT	7 cut(s)	83, 110, 215, 278, 499, 665, 891
HpyCH4IV	ACGT	2 cut(s)	548, 700
HpyCH4V	TGCA	5 cut(s)	34, 61, 67, 88, 526
HpyF3I	CTNAG	8 cut(s)	184, 288, 413, 443, 630, 636, 767, 804
HpySE526I	ACGT	2 cut(s)	548, 700
Hsp92II	CATG	3 cut(s)	17, 65, 128
HspAI	GCGC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	7 cut(s)	7, 76, 232, 359, 578, 587, 850
Lsp1109I	GCAGC	2 cut(s)	436, 538
LweI	GCATC	2 cut(s)	684, 817
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	2 cut(s)	548, 700
MaeIII	GTNAC	3 cut(s)	312, 865, 872
MalI	GATC	7 cut(s)	9, 78, 234, 361, 580, 589, 852
MboI	GATC	7 cut(s)	7, 76, 232, 359, 578, 587, 850
MboII	GAAGA	2 cut(s)	30, 86
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	1 cut(s)	578
MluCI	AATT	2 cut(s)	219, 236
MlyI	GAGTC	2 cut(s)	628, 757
MnlI	CCTC	9 cut(s)	375, 414, 462, 640, 798, 801, 813, 823, 838
Mph1103I	ATGCAT	1 cut(s)	63
MslI	CAYNNNNRTG	2 cut(s)	39, 129
MspA1I	CMGCKG	2 cut(s)	188, 427
MspR9I	CCNGG	2 cut(s)	177, 254
MunI	CAATTG	1 cut(s)	236
Mva1269I	GAATGC	2 cut(s)	36, 528
MvaI	CCWGG	2 cut(s)	177, 254
NdeII	GATC	7 cut(s)	7, 76, 232, 359, 578, 587, 850
NlaIII	CATG	3 cut(s)	17, 65, 128
NlaIV	GGNNCC	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	872
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	1 cut(s)	65
OliI	CACNNNNGTG	1 cut(s)	39
PctI	GAATGC	2 cut(s)	36, 528
PfeI	GAWTC	1 cut(s)	572
PflFI	GACNNNGTC	2 cut(s)	244, 278
PkrI	GCNGC	2 cut(s)	426, 528
PleI	GAGTC	2 cut(s)	628, 757
PpsI	GAGTC	2 cut(s)	628, 757
Psp6I	CCWGG	2 cut(s)	175, 252
PspFI	CCCAGC	1 cut(s)	612
PspGI	CCWGG	2 cut(s)	175, 252
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	3 cut(s)	615, 704, 713
PsuI	RGATCY	1 cut(s)	578
PsyI	GACNNNGTC	2 cut(s)	244, 278
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	3 cut(s)	333, 384, 400
RsaNI	GTAC	3 cut(s)	332, 383, 399
RseI	CAYNNNNRTG	2 cut(s)	39, 129
SalI	GTCGAC	1 cut(s)	657
SatI	GCNGC	2 cut(s)	425, 527
Sau3AI	GATC	7 cut(s)	7, 76, 232, 359, 578, 587, 850
Sau96I	GGNCC	3 cut(s)	615, 704, 713
SchI	GAGTC	2 cut(s)	628, 757
ScrFI	CCNGG	2 cut(s)	177, 254
SfaNI	GCATC	2 cut(s)	684, 817
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	2 cut(s)	39, 129
SmlI	CTYRAG	2 cut(s)	517, 842
SmoI	CTYRAG	2 cut(s)	517, 842
Sse9I	AATT	2 cut(s)	219, 236
SsiI	CCGC	3 cut(s)	422, 427, 794
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	175, 252
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	7 cut(s)	83, 110, 215, 278, 499, 665, 891
TaiI	ACGT	2 cut(s)	551, 703
TaqI	TCGA	3 cut(s)	28, 96, 658
TasI	AATT	2 cut(s)	219, 236
TfiI	GAWTC	1 cut(s)	572
TscAI	CASTG	2 cut(s)	589, 668
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	2 cut(s)	424, 526
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	3 cut(s)	87, 117, 159
TspRI	CASTG	2 cut(s)	589, 668
Tth111I	GACNNNGTC	2 cut(s)	244, 278
VpaK11BI	GGWCC	1 cut(s)	704
XceI	RCATGY	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XmaJI	CCTAGG	1 cut(s)	355
XmiI	GTMKAC	2 cut(s)	210, 658
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.