pycom10g04200

GATA transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
4452687 .. 4456810
4124 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g04200.5

Sequence Viewer

Length: 1125 bp
ATGGTGTACCAAACCTTGTTAGCAAAGTCCCCAACAATGGCGGGTAGGCTAGTTTGCTACGGCAGTCTGCAATTTGTTGTTGTGTTTTTTAATAAAAAAAAATTCAAGGAAATCAAAATTAGGGTTTGGATTTCCCCAATTAAGTTCCATTGCTTTCAATCAACTCATAATTTGCGCGTGATACGACTCGTTTTGAATTTTGGGTTCTGGGTTAAATATTTTTCGTATCAGAAATGGCAGAATCTGATCGACCAGAATTCAATGTACAGCACCGGAGGAGGAGTGACACAGAGTAACCAAGTTGACGACCAAGACGACGACGTTGAAGAGCCCATTGACAACCCTAACATACGCTTTGAAGATAGCACCGCCATTCCTCCAAATCAACTCTACCTTCCCAGCTCCGAATACCCTCCGCCGCCCGCCGCAAACGGTGCCTCTGATCAGCTTACTCTGTCCTTCCAGGGCGAAGTTTATGTCTTCGACGCTGTTTCGCCCGATAAGGTGCAGGCGGTACTGCTACTTTTGGGTGGATATGAAATCCCTTCTGGCATTCCTTCCATGGGGCCGGTTCCTCTTAACCAGCAAGGTATGAATGACTTACCTGCAAAGCCAATTCAACCGCAGAGAGCTGCATCTTTAAGTCGGTTTCGCGAGAAGAGAAAAGAACGTTGTTTTGATAAGAAAATCCGTTACACCGTCCGGAAAGAAGTTGCACTAAGAATGCAGCGTAAAAAGGGTCAATTTACATCGTCCAAGGCTAGTTCCGATGATGGAGGTCCTGCTTCATCAACACAGGCCTCTGGTCAAGATGAAAGCATGCGGGAAACTTCGTGCACACACTGTGGGATAAGCTCAAAGTCAACTCCAATGATGCGTCGTGGCCCAGCAGGTCCAAGGACTCTATGTAATGCATGTGGGCTGAAATGGGCCAACAAGGTTTGGATCGATCTAACAGGTGTTCCTAAGGTTTTAAATGTAGGTATCCACGATCCTTCTTTAAAAGGAATTGAACAGAGTAACGGCGAAGTTCAAGACTCTGATGTTGTAGCCATGGGTGCCAACGTTGCCCCTTCCTCAGCTAATGGCGATAATCCAGCCATGACCGTAGACAGGAAATTGTGA

Protein Analysis

375

Amino Acids

41.33

Weight (kDa)

9.03

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 613, 881
AccB1I GGYRCC 2 cut(s) 434, 1058
AccI GTMKAC 1 cut(s) 1110
AccII CGCG 2 cut(s) 177, 654
AccIII TCCGGA 1 cut(s) 702
AciI CCGC 9 cut(s) 41, 369, 416, 419, 423, 426, 512, 623, 823
AclI AACGTT 2 cut(s) 670, 1065
AclWI GGATC 2 cut(s) 953, 986
AcsI RAATTY 3 cut(s) 101, 196, 256
AdeI CACNNNGTG 1 cut(s) 845
AfaI GTAC 3 cut(s) 8, 266, 516
AfiI CCNNNNNNNGG 3 cut(s) 37, 563, 1113
AgsI TTSAA 9 cut(s) 106, 158, 196, 261, 326, 359, 620, 1013, 1034
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 5 cut(s) 402, 448, 632, 855, 1082
AluI AGCT 5 cut(s) 402, 448, 632, 855, 1082
Alw21I GWGCWC 1 cut(s) 839
Alw44I GTGCAC 1 cut(s) 835
AlwI GGATC 2 cut(s) 953, 986
AlwNI CAGNNNCTG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 702
AoxI GGCC 4 cut(s) 566, 798, 883, 930
ApaLI GTGCAC 1 cut(s) 835
ApeKI GCWGC 2 cut(s) 632, 727
ApoI RAATTY 3 cut(s) 101, 196, 256
ArsI GACNNNNNNTTYG 2 cut(s) 462, 494
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 5 cut(s) 566, 779, 884, 893, 930
AvaII GGWCC 2 cut(s) 779, 893
AxyI CCTNAGG 1 cut(s) 966
BaeGI GKGCMC 1 cut(s) 839
BanI GGYRCC 2 cut(s) 434, 1058
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 839
BbvCI CCTCAGC 1 cut(s) 1078
BbvI GCAGC 2 cut(s) 619, 739
BccI CCATC 1 cut(s) 767
BceAI ACGGC 2 cut(s) 76, 1039
BciT130I CCWGG 1 cut(s) 464
BciVI GTATCC 1 cut(s) 995
BclI TGATCA 1 cut(s) 442
BfaI CTAG 2 cut(s) 50, 762
BfuAI ACCTGC 2 cut(s) 613, 881
BfuI GTATCC 1 cut(s) 995
BisI GCNGC 4 cut(s) 419, 426, 633, 728
BlsI GCNGC 4 cut(s) 420, 427, 634, 729
Bme1390I CCNGG 1 cut(s) 464
Bme18I GGWCC 2 cut(s) 779, 893
BmgT120I GGNCC 5 cut(s) 566, 779, 884, 893, 930
BmiI GGNNCC 4 cut(s) 436, 567, 573, 1060
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 2 cut(s) 644, 864
BpiI GAAGAC 1 cut(s) 472
Bpu10I CCTNAGC 1 cut(s) 1078
Bsa29I ATCGAT 1 cut(s) 948
BsaJI CCNNGG 5 cut(s) 463, 561, 756, 896, 1053
BsaWI WCCGGW 2 cut(s) 272, 702
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 563, 1113
Bse118I RCCGGY 1 cut(s) 568
Bse21I CCTNAGG 1 cut(s) 966
Bse3DI GCAATG 1 cut(s) 148
BseAI TCCGGA 1 cut(s) 702
BseBI CCWGG 1 cut(s) 464
BseCI ATCGAT 1 cut(s) 948
BseDI CCNNGG 5 cut(s) 463, 561, 756, 896, 1053
BseLI CCNNNNNNNGG 3 cut(s) 37, 563, 1113
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 1092
BseRI GAGGAG 2 cut(s) 291, 294
BseSI GKGCMC 1 cut(s) 839
BseXI GCAGC 2 cut(s) 619, 739
BseYI CCCAGC 2 cut(s) 398, 886
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 2 cut(s) 177, 654
BshFI GGCC 4 cut(s) 568, 800, 885, 932
BshNI GGYRCC 2 cut(s) 434, 1058
BshVI ATCGAT 1 cut(s) 948
BsiHKAI GWGCWC 1 cut(s) 839
BsiSI CCGG 3 cut(s) 273, 569, 703
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 3 cut(s) 37, 563, 1113
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 2 cut(s) 552, 729
BsnI GGCC 4 cut(s) 568, 800, 885, 932
Bsp1286I GDGCHC 2 cut(s) 333, 839
Bsp13I TCCGGA 1 cut(s) 702
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 5 cut(s) 246, 442, 945, 949, 991
Bsp19I CCATGG 2 cut(s) 561, 1053
Bsp68I TCGCGA 1 cut(s) 654
BspACI CCGC 9 cut(s) 41, 369, 416, 419, 423, 426, 512, 623, 823
BspANI GGCC 4 cut(s) 568, 800, 885, 932
BspCNI CTCAG 1 cut(s) 1091
BspDI ATCGAT 1 cut(s) 948
BspEI TCCGGA 1 cut(s) 702
BspFNI CGCG 2 cut(s) 177, 654
BspLI GGNNCC 4 cut(s) 436, 567, 573, 1060
BspMI ACCTGC 2 cut(s) 613, 881
BspPI GGATC 2 cut(s) 953, 986
BspQI GCTCTTC 1 cut(s) 321
BspT107I GGYRCC 2 cut(s) 434, 1058
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 568
BsrGI TGTACA 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 5 cut(s) 463, 561, 756, 896, 1053
BssMI GATC 5 cut(s) 246, 442, 945, 949, 991
BssT1I CCWWGG 4 cut(s) 561, 756, 896, 1053
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 4 cut(s) 434, 700, 845, 1108
Bst6I CTCTTC 2 cut(s) 321, 653
BstAPI GCANNNNNTGC 1 cut(s) 434
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 3 cut(s) 423, 510, 821
BstDEI CTNAG 3 cut(s) 719, 966, 1078
BstDSI CCRYGG 2 cut(s) 561, 1053
BstFNI CGCG 2 cut(s) 177, 654
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 5 cut(s) 249, 445, 948, 952, 994
BstMBI GATC 5 cut(s) 246, 442, 945, 949, 991
BstMWI GCNNNNNNNGC 3 cut(s) 434, 1058, 1067
BstNI CCWGG 1 cut(s) 464
BstNSI RCATGY 2 cut(s) 823, 918
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 839
BstUI CGCG 2 cut(s) 177, 654
BstV1I GCAGC 2 cut(s) 619, 739
BstV2I GAAGAC 1 cut(s) 472
Bsu15I ATCGAT 1 cut(s) 948
Bsu36I CCTNAGG 1 cut(s) 966
BsuI GTATCC 1 cut(s) 995
BsuRI GGCC 4 cut(s) 568, 800, 885, 932
BsuTUI ATCGAT 1 cut(s) 948
BtgI CCRYGG 2 cut(s) 561, 1053
BtsIMutI CAGTG 1 cut(s) 841
BtuMI TCGCGA 1 cut(s) 654
BveI ACCTGC 2 cut(s) 613, 881
Cac8I GCNNGC 3 cut(s) 423, 510, 821
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 5 cut(s) 566, 779, 884, 893, 930
ClaI ATCGAT 1 cut(s) 948
CseI GACGC 2 cut(s) 494, 866
Csp6I GTAC 3 cut(s) 7, 265, 515
CviAII CATG 5 cut(s) 562, 820, 915, 1054, 1102
CviQI GTAC 3 cut(s) 7, 265, 515
DdeI CTNAG 3 cut(s) 719, 966, 1078
DpnI GATC 5 cut(s) 248, 444, 947, 951, 993
DpnII GATC 5 cut(s) 246, 442, 945, 949, 991
DraI TTTAAA 2 cut(s) 975, 1002
DraIII CACNNNGTG 1 cut(s) 845
Eam1104I CTCTTC 2 cut(s) 321, 653
EarI CTCTTC 2 cut(s) 321, 653
EciI GGCGGA 1 cut(s) 405
Eco130I CCWWGG 4 cut(s) 561, 756, 896, 1053
Eco147I AGGCCT 1 cut(s) 800
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 2 cut(s) 779, 893
Eco81I CCTNAGG 1 cut(s) 966
EcoO109I RGGNCCY 1 cut(s) 779
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 462
EcoT14I CCWWGG 4 cut(s) 561, 756, 896, 1053
EcoT22I ATGCAT 1 cut(s) 916
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 4 cut(s) 561, 756, 896, 1053
FaeI CATG 5 cut(s) 565, 823, 918, 1057, 1105
FaqI GGGAC 1 cut(s) 13
FatI CATG 5 cut(s) 561, 819, 914, 1053, 1101
FauI CCCGC 3 cut(s) 34, 430, 816
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 1110
Fnu4HI GCNGC 4 cut(s) 419, 426, 633, 728
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 4 cut(s) 419, 426, 633, 728
FspBI CTAG 2 cut(s) 50, 762
GlaI GCGC 1 cut(s) 176
GluI GCNGC 4 cut(s) 419, 426, 633, 728
GsaI CCCAGC 2 cut(s) 402, 890
HaeIII GGCC 4 cut(s) 568, 800, 885, 932
HapII CCGG 3 cut(s) 273, 569, 703
HgaI GACGC 2 cut(s) 494, 866
HhaI GCGC 1 cut(s) 177
Hin1II CATG 5 cut(s) 565, 823, 918, 1057, 1105
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 2 cut(s) 304, 864
HindII GTYRAC 2 cut(s) 304, 864
HinfI GANTC 4 cut(s) 186, 241, 901, 1037
HpaII CCGG 3 cut(s) 273, 569, 703
Hpy166II GTNNAC 5 cut(s) 7, 304, 837, 864, 1111
Hpy188I TCNGA 6 cut(s) 231, 246, 406, 442, 769, 1042
Hpy188III TCNNGA 4 cut(s) 653, 703, 809, 1034
Hpy8I GTNNAC 5 cut(s) 7, 304, 837, 864, 1111
Hpy99I CGWCG 4 cut(s) 320, 323, 488, 882
HpyAV CCTTC 6 cut(s) 404, 469, 555, 567, 1005, 1083
HpyCH4III ACNGT 4 cut(s) 434, 700, 845, 1108
HpyCH4IV ACGT 3 cut(s) 321, 670, 1065
HpyCH4V TGCA 8 cut(s) 70, 508, 608, 635, 716, 727, 837, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 1058, 1067
HpyF3I CTNAG 3 cut(s) 719, 966, 1078
HpySE526I ACGT 3 cut(s) 321, 670, 1065
Hsp92II CATG 5 cut(s) 565, 823, 918, 1057, 1105
HspAI GCGC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 702
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 5 cut(s) 246, 442, 945, 949, 991
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 2 cut(s) 619, 739
LweI GCATC 2 cut(s) 644, 864
MaeI CTAG 2 cut(s) 50, 762
MaeII ACGT 3 cut(s) 321, 670, 1065
MaeIII GTNAC 4 cut(s) 283, 293, 692, 1019
MalI GATC 5 cut(s) 248, 444, 947, 951, 993
MboI GATC 5 cut(s) 246, 442, 945, 949, 991
MboII GAAGA 4 cut(s) 338, 371, 472, 670
MhlI GDGCHC 2 cut(s) 333, 839
MlyI GAGTC 3 cut(s) 180, 895, 1031
MnlI CCTC 9 cut(s) 269, 272, 387, 423, 448, 585, 770, 811, 1087
Mph1103I ATGCAT 1 cut(s) 916
MroI TCCGGA 1 cut(s) 702
MseI TTAA 7 cut(s) 90, 141, 213, 579, 641, 974, 1001
MspI CCGG 3 cut(s) 273, 569, 703
MspR9I CCNGG 1 cut(s) 464
Mva1269I GAATGC 2 cut(s) 552, 729
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 2 cut(s) 177, 654
MwoI GCNNNNNNNGC 3 cut(s) 434, 1058, 1067
NcoI CCATGG 2 cut(s) 561, 1053
NdeII GATC 5 cut(s) 246, 442, 945, 949, 991
NlaIII CATG 5 cut(s) 565, 823, 918, 1057, 1105
NlaIV GGNNCC 4 cut(s) 436, 567, 573, 1060
NmuCI GTSAC 1 cut(s) 283
NruI TCGCGA 1 cut(s) 654
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 2 cut(s) 823, 918
PaeI GCATGC 1 cut(s) 823
PceI AGGCCT 1 cut(s) 800
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 2 cut(s) 552, 729
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 4 cut(s) 420, 427, 634, 729
PleI GAGTC 3 cut(s) 180, 895, 1031
PpsI GAGTC 3 cut(s) 180, 895, 1031
PpuMI RGGWCCY 1 cut(s) 779
Psp1406I AACGTT 2 cut(s) 670, 1065
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 462
PspFI CCCAGC 2 cut(s) 398, 886
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 4 cut(s) 436, 567, 573, 1060
PspPI GGNCC 5 cut(s) 566, 779, 884, 893, 930
PspPPI RGGWCCY 1 cut(s) 779
PstNI CAGNNNCTG 1 cut(s) 244
RruI TCGCGA 1 cut(s) 654
RsaI GTAC 3 cut(s) 8, 266, 516
RsaNI GTAC 3 cut(s) 7, 265, 515
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 7 cut(s) 90, 141, 213, 579, 641, 974, 1001
SatI GCNGC 4 cut(s) 419, 426, 633, 728
Sau3AI GATC 5 cut(s) 246, 442, 945, 949, 991
Sau96I GGNCC 5 cut(s) 566, 779, 884, 893, 930
SchI GAGTC 3 cut(s) 180, 895, 1031
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 2 cut(s) 333, 839
SfaNI GCATC 2 cut(s) 644, 864
SinI GGWCC 2 cut(s) 779, 893
SphI GCATGC 1 cut(s) 823
SseBI AGGCCT 1 cut(s) 800
SsiI CCGC 9 cut(s) 41, 369, 416, 419, 423, 426, 512, 623, 823
SspI AATATT 1 cut(s) 218
SspMI CTAG 2 cut(s) 50, 762
StuI AGGCCT 1 cut(s) 800
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 4 cut(s) 561, 756, 896, 1053
TaaI ACNGT 4 cut(s) 434, 700, 845, 1108
TaiI ACGT 3 cut(s) 324, 673, 1068
TaqI TCGA 3 cut(s) 249, 483, 948
TatI WGTACW 1 cut(s) 264
TauI GCSGC 2 cut(s) 421, 428
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 7 cut(s) 90, 141, 213, 579, 641, 974, 1001
Tru9I TTAA 7 cut(s) 90, 141, 213, 579, 641, 974, 1001
TscAI CASTG 1 cut(s) 848
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 2 cut(s) 632, 727
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 552, 608, 777, 828
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 1 cut(s) 848
VneI GTGCAC 1 cut(s) 835
VpaK11BI GGWCC 2 cut(s) 779, 893
XapI RAATTY 3 cut(s) 101, 196, 256
XceI RCATGY 2 cut(s) 823, 918
XmiI GTMKAC 1 cut(s) 1110
XspI CTAG 2 cut(s) 50, 762
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.