Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Reverse (-)

28012925 .. 28013206

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0288000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAGAGAAAAGGCTGATCTTTATACAGCAGAAAAGGGCATCAACCTCTACAGGAGTACAAGTGTGTGCAAGTTCCCTCTGTATGAAATCGATTTCGGGTGGGGAAAACCTACCTGGGTTTCTAGCCCAAGTGAACACAAAAACTTTATTTTGCTGCTGGACACGAAAAGTGGTGATGGTATTGAAGCTTGGGTGACACTTGATCAACAAGAAATGGCCATTTTTGAGTGTCACGAGGAGCTCCTTGCATTCAGCTCCGTTAATCCCAGCGTCGTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

93

Amino Acids

10.57

Weight (kDa)

4.72

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	15 - 81	4.4e-15	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	216
AfaI	GTAC	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	3 cut(s)	188, 241, 255
AluI	AGCT	3 cut(s)	188, 241, 255
Alw21I	GWGCWC	1 cut(s)	243
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	185, 205
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	115
BclI	TGATCA	1 cut(s)	202
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	49
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
BseBI	CCWGG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	141
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	16, 202
BspANI	GGCC	1 cut(s)	218
BspDI	ATCGAT	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	16, 202
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	19, 205
BstMBI	GATC	2 cut(s)	16, 202
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	141
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	90
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	57
CviJI	RGCY	6 cut(s)	14, 126, 188, 218, 241, 255
CviKI_1	RGCY	6 cut(s)	14, 126, 188, 218, 241, 255
CviQI	GTAC	1 cut(s)	57
DpnI	GATC	2 cut(s)	18, 204
DpnII	GATC	2 cut(s)	16, 202
EaeI	YGGCCR	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	243
FaiI	YATR	2 cut(s)	24, 84
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	1 cut(s)	155
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	218
HgaI	GACGC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	186
HphI	GGTGA	2 cut(s)	185, 205
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	69, 248
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	16, 202
LmnI	GCTCC	3 cut(s)	238, 246, 260
LpnPI	CCDG	4 cut(s)	37, 100, 127, 143
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	193, 230
MalI	GATC	2 cut(s)	18, 204
MboI	GATC	2 cut(s)	16, 202
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	1 cut(s)	277
MluNI	TGGCCA	1 cut(s)	218
MnlI	CCTC	3 cut(s)	56, 87, 229
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	261, 276
Msp20I	TGGCCA	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	16, 202
NmuCI	GTSAC	2 cut(s)	193, 230
PctI	GAATGC	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	261, 276
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	2 cut(s)	16, 202
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	6 cut(s)	48, 112, 116, 190, 243, 257
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	49
Sse9I	AATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	113
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	277
TatI	WGTACW	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	261, 276
Tru9I	TTAA	2 cut(s)	261, 276
TseFI	GTSAC	2 cut(s)	193, 230
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	2 cut(s)	193, 230
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	247
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.