Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8229271.1

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 643

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8229271.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 283 bp

agggagtgatgcttcacaaatggaggcggtgaatgttcaaccaatacaagcgaggaggccttacgagggagaagagtcggaaggggactatgccgccatgaataatggagccggagcgaatccttctcaagtcacaatgagtcgctgcagcaattccactcgcaccagtgagctcaccatcgccttcgagggcgaggtctacgtttttcccgccgttactcccgataaggttccttccttcctttggctcttttatactttcagtgttcatttgcgaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

93

Amino Acids

10.22

Weight (kDa)

4.6

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	3 cut(s)	27, 94, 211
AcsI	RAATTY	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	66, 244
AgsI	TTSAA	1 cut(s)	39
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	145, 148
ApoI	RAATTY	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	41, 167
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	132, 160
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	146
BisI	GCNGC	3 cut(s)	94, 146, 149
BlsI	GCNGC	3 cut(s)	95, 147, 150
BmiI	GGNNCC	2 cut(s)	110, 232
BpuEI	CTTGAG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 244
Bse1I	ACTGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	66, 244
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	132, 160
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	66, 244
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	175
BspACI	CCGC	3 cut(s)	27, 94, 211
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	110, 232
BspMAI	CTGCAG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	132, 160
BsuRI	GGCC	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	173, 269
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	4 cut(s)	59, 111, 173, 248
CviKI_1	RGCY	4 cut(s)	59, 111, 173, 248
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	1 cut(s)	101
FaiI	YATR	3 cut(s)	91, 99, 256
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	94, 146, 149
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	94, 146, 149
GluI	GCNGC	3 cut(s)	94, 146, 149
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	3 cut(s)	75, 119, 140
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	41, 167
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	5 cut(s)	75, 133, 194, 244, 248
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	148
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	108, 114
LpnPI	CCDG	2 cut(s)	125, 179
Lsp1109I	GCAGC	2 cut(s)	132, 160
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	131, 215
MboII	GAAGA	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	152, 277
MlyI	GAGTC	2 cut(s)	84, 149
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	6 cut(s)	17, 46, 49, 59, 182, 188
MspI	CCGG	1 cut(s)	112
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	110, 232
NmuCI	GTSAC	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	95, 147, 150
PleI	GAGTC	2 cut(s)	83, 148
PpsI	GAGTC	2 cut(s)	83, 148
Psp124BI	GAGCTC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	110, 232
PstI	CTGCAG	1 cut(s)	150
SacI	GAGCTC	1 cut(s)	175
SatI	GCNGC	3 cut(s)	94, 146, 149
SchI	GAGTC	2 cut(s)	84, 149
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	4 cut(s)	175, 199, 205, 232
SfcI	CTRYAG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	2 cut(s)	152, 277
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	3 cut(s)	27, 94, 211
SstI	GAGCTC	1 cut(s)	175
StuI	AGGCCT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	152, 277
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	2 cut(s)	173, 269
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	2 cut(s)	145, 148
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	114, 258
TspRI	CASTG	2 cut(s)	173, 269
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.