Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

42276335 .. 42285566

Gene Structure 9232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGGCGGTGAATGTTCAACCAATACAAGCGAGGAGGCCTTACGAGGGAGAAGAGTCTGAAGGCGACTATGTCGCCATGAATAATGGAGCCGGAGCCGGAGCGAATCCTTCTCAAGCCACAATGAGTCGCTGCAGCAATTCGACTCGGACCAGTGAGCTCACCATCGCCTTCGAGGGCGAGGTCTACGTTTTTCCCGCCGTTACTCCCGATAAGGTTCAAGCAGTGCTGTTGCTATTGGGAGGACGTGATATACCAGGCAGTGATATACCAAGCAGCGTTCCTAGCTCTGGGTTTTCGCTACAACAGAATAGCAGGGGTATAGGGGACATCTCACGAAATTCAAAACTTTCACGAAGATTTGCATCTCTTGTTAGGTTCCGTGAAAAACGGAAAGAGAGATGCTTTGACAAGAAAATTCGGTACAGTTGTCGTAAAGACATTGCAGAGAGAATGCATCGGAAGAATGGACAGTTTGCATCTTTGAAGGATCCTTCCAAATTGGTTGCGGGGAATTGTGATTCAAGTGATAGCACTTCTTGTCCAGAATCTGTATGTCAGCACTGTGGGATTAGTGAAAAGTCTACCCCAGCAATGCGTCGGGGACCGAATGGCCCAAGATCTCTCTGTAATGCTTGTGGTCTTAGGTGGGCAAATAAGGGAACATTGAGAGATCTTACAAAATCAGGGAGGGATGTTTCTTTCGACCAAAATGAGCTGGAAAGCCCAGAGGAGAATAAGCCTATTGCATTGGATGCTGAAGTCCCTCTTCTGACACTGGGCGACCAGGACATGCTTGAAACCGCTGAAGCTGCTACTAATCACGTATCCATCCAAATGGAGAATTCATCAGTCAACCTTGATGAGCAGGAGAATCTGGAAGAATTAGCCAATGCTTCAGGGACAGAATTTGAGATTCCTGCAAACTTCGAAGAGCAGGTGGTTGATTTTTATGATTGCAACTTGGAGACTCACTGGGGAGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

329

Amino Acids

36.05

Weight (kDa)

5.01

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	51 - 81	6.5e-10	tify domain
CCT	PF06203	120 - 161	2.3e-14	CCT motif
Jas_motif	PF09425	120 - 143	2.5e-06	Jas motif
GATA	PF00320	186 - 222	1.6e-12	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	928
Acc36I	ACCTGC	1 cut(s)	928
AccI	GTMKAC	2 cut(s)	186, 584
AciI	CCGC	4 cut(s)	8, 198, 509, 804
AclWI	GGATC	2 cut(s)	485, 498
AcsI	RAATTY	4 cut(s)	340, 417, 844, 908
AcuI	CTGAAG	4 cut(s)	81, 780, 828, 882
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	47, 290
AgsI	TTSAA	6 cut(s)	20, 221, 345, 487, 525, 800
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	256, 786
AluBI	AGCT	4 cut(s)	160, 288, 718, 812
AluI	AGCT	4 cut(s)	160, 288, 718, 812
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	962
AlwI	GGATC	2 cut(s)	485, 498
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	38, 613
ApeKI	GCWGC	4 cut(s)	132, 135, 276, 812
ApoI	RAATTY	4 cut(s)	340, 417, 844, 908
AspS9I	GGNCC	3 cut(s)	150, 605, 614
AsuHPI	GGTGA	2 cut(s)	22, 154
AsuII	TTCGAA	1 cut(s)	930
AvaII	GGWCC	2 cut(s)	150, 605
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BamHI	GGATCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	119, 147, 288, 799
BccI	CCATC	2 cut(s)	173, 839
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	258, 788
BciVI	GTATCC	1 cut(s)	838
BcoDI	GTCTC	1 cut(s)	962
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	928
BfuI	GTATCC	1 cut(s)	838
BglII	AGATCT	2 cut(s)	620, 673
BisI	GCNGC	4 cut(s)	133, 136, 277, 813
BlsI	GCNGC	4 cut(s)	134, 137, 278, 814
Bme1390I	CCNGG	2 cut(s)	258, 788
Bme18I	GGWCC	2 cut(s)	150, 605
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	150, 605, 614
BmiI	GGNNCC	5 cut(s)	91, 97, 380, 492, 606
BmrFI	CCNGG	2 cut(s)	258, 788
BmrI	ACTGGG	2 cut(s)	788, 985
BmsI	GCATC	5 cut(s)	374, 392, 466, 488, 745
BmuI	ACTGGG	2 cut(s)	788, 985
Bpu14I	TTCGAA	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	826
BsaBI	GATNNNNATC	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 290
Bse1I	ACTGG	3 cut(s)	153, 783, 980
Bse3DI	GCAATG	2 cut(s)	441, 600
Bse8I	GATNNNNATC	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	258, 788
BseGI	GGATG	3 cut(s)	700, 760, 831
BseJI	GATNNNNATC	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	47, 290
BseMI	GCAATG	2 cut(s)	441, 600
BseNI	ACTGG	3 cut(s)	153, 783, 980
BseRI	GAGGAG	2 cut(s)	49, 746
BseXI	GCAGC	4 cut(s)	119, 147, 288, 799
BseYI	CCCAGC	1 cut(s)	589
BshFI	GGCC	2 cut(s)	40, 615
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	93, 99
BslFI	GGGAC	4 cut(s)	341, 618, 749, 916
BslI	CCNNNNNNNGG	2 cut(s)	47, 290
BsmAI	GTCTC	1 cut(s)	962
BsmFI	GGGAC	4 cut(s)	341, 618, 749, 916
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	40, 615
Bsp119I	TTCGAA	1 cut(s)	930
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	3 cut(s)	490, 620, 673
BspACI	CCGC	4 cut(s)	8, 198, 509, 804
BspANI	GGCC	2 cut(s)	40, 615
BspLI	GGNNCC	5 cut(s)	91, 97, 380, 492, 606
BspMAI	CTGCAG	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	928
BspPI	GGATC	2 cut(s)	485, 498
BspQI	GCTCTTC	1 cut(s)	927
BspT104I	TTCGAA	1 cut(s)	930
BsrDI	GCAATG	2 cut(s)	441, 600
BsrI	ACTGG	3 cut(s)	153, 783, 980
BssMI	GATC	3 cut(s)	490, 620, 673
Bst2UI	CCWGG	2 cut(s)	258, 788
Bst4CI	ACNGT	3 cut(s)	428, 474, 566
Bst6I	CTCTTC	3 cut(s)	48, 774, 927
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstBAI	YACGTR	1 cut(s)	826
BstBI	TTCGAA	1 cut(s)	930
BstDEI	CTNAG	1 cut(s)	644
BstF5I	GGATG	3 cut(s)	700, 760, 831
BstKTI	GATC	3 cut(s)	493, 623, 676
BstMAI	GTCTC	1 cut(s)	962
BstMBI	GATC	3 cut(s)	490, 620, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 755, 812
BstNI	CCWGG	2 cut(s)	258, 788
BstNSI	RCATGY	1 cut(s)	796
BstSCI	CCNGG	2 cut(s)	256, 786
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	4 cut(s)	119, 147, 288, 799
BstX2I	RGATCY	3 cut(s)	490, 620, 673
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstYI	RGATCY	3 cut(s)	490, 620, 673
BsuI	GTATCC	1 cut(s)	838
BsuRI	GGCC	2 cut(s)	40, 615
BtgZI	GCGATG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	700, 760, 831
BtsI	GCAGTG	2 cut(s)	231, 268
BtsIMutI	CAGTG	6 cut(s)	160, 231, 268, 562, 776, 973
BveI	ACCTGC	1 cut(s)	928
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	3 cut(s)	150, 605, 614
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	2 cut(s)	79, 793
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	644
DpnI	GATC	3 cut(s)	492, 622, 675
DpnII	GATC	3 cut(s)	490, 620, 673
Eam1104I	CTCTTC	3 cut(s)	48, 774, 927
EarI	CTCTTC	3 cut(s)	48, 774, 927
Ecl136II	GAGCTC	1 cut(s)	160
Eco147I	AGGCCT	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	150, 605
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	4 cut(s)	81, 780, 828, 882
EcoICRI	GAGCTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	844
EcoRII	CCWGG	2 cut(s)	256, 786
EcoT22I	ATGCAT	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	2 cut(s)	82, 796
FaiI	YATR	8 cut(s)	72, 80, 254, 269, 323, 556, 794, 954
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	4 cut(s)	341, 618, 749, 916
FatI	CATG	2 cut(s)	78, 792
FauI	CCCGC	2 cut(s)	205, 502
FblI	GTMKAC	2 cut(s)	186, 584
Fnu4HI	GCNGC	4 cut(s)	133, 136, 277, 813
FokI	GGATG	3 cut(s)	707, 767, 818
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	4 cut(s)	133, 136, 277, 813
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	4 cut(s)	133, 136, 277, 813
GsaI	CCCAGC	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	40, 615
HapII	CCGG	2 cut(s)	93, 99
HgaI	GACGC	1 cut(s)	587
Hin1II	CATG	2 cut(s)	82, 796
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	9 cut(s)	56, 106, 127, 145, 521, 548, 874, 916, 970
HpaII	CCGG	2 cut(s)	93, 99
HphI	GGTGA	2 cut(s)	22, 154
Hpy166II	GTNNAC	3 cut(s)	187, 585, 856
Hpy188I	TCNGA	4 cut(s)	61, 150, 462, 774
Hpy188III	TCNNGA	5 cut(s)	209, 336, 354, 545, 878
Hpy8I	GTNNAC	3 cut(s)	187, 585, 856
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	5 cut(s)	56, 120, 181, 481, 504
HpyCH4III	ACNGT	3 cut(s)	428, 474, 566
HpyCH4IV	ACGT	3 cut(s)	189, 247, 825
HpyCH4V	TGCA	8 cut(s)	135, 365, 446, 457, 479, 749, 923, 960
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 755, 812
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	3 cut(s)	189, 247, 825
Hsp92II	CATG	2 cut(s)	82, 796
Kzo9I	GATC	3 cut(s)	490, 620, 673
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	3 cut(s)	89, 95, 101
Lsp1109I	GCAGC	4 cut(s)	119, 147, 288, 799
LweI	GCATC	5 cut(s)	374, 392, 466, 488, 745
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	3 cut(s)	189, 247, 825
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	492, 622, 675
MboI	GATC	3 cut(s)	490, 620, 673
MboII	GAAGA	6 cut(s)	65, 369, 475, 761, 893, 944
MflI	RGATCY	3 cut(s)	490, 620, 673
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	8 cut(s)	139, 340, 417, 500, 514, 844, 884, 908
MlyI	GAGTC	4 cut(s)	65, 136, 139, 964
Mph1103I	ATGCAT	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	836
MspA1I	CMGCKG	1 cut(s)	806
MspI	CCGG	2 cut(s)	93, 99
MspR9I	CCNGG	2 cut(s)	258, 788
Mva1269I	GAATGC	1 cut(s)	459
MvaI	CCWGG	2 cut(s)	258, 788
MwoI	GCNNNNNNNGC	3 cut(s)	285, 755, 812
NdeII	GATC	3 cut(s)	490, 620, 673
NlaIII	CATG	2 cut(s)	82, 796
NlaIV	GGNNCC	5 cut(s)	91, 97, 380, 492, 606
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	1 cut(s)	796
NspV	TTCGAA	1 cut(s)	930
PaqCI	CACCTGC	1 cut(s)	928
PceI	AGGCCT	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	927
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	5 cut(s)	106, 521, 548, 874, 916
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	134, 137, 278, 814
PleI	GAGTC	4 cut(s)	64, 135, 139, 964
PpsI	GAGTC	4 cut(s)	64, 135, 139, 964
Ppu21I	YACGTR	1 cut(s)	826
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	256, 786
PspFI	CCCAGC	1 cut(s)	589
PspGI	CCWGG	2 cut(s)	256, 786
PspN4I	GGNNCC	5 cut(s)	91, 97, 380, 492, 606
PspPI	GGNCC	3 cut(s)	150, 605, 614
PstI	CTGCAG	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	3 cut(s)	490, 620, 673
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	836
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	927
SatI	GCNGC	4 cut(s)	133, 136, 277, 813
Sau3AI	GATC	3 cut(s)	490, 620, 673
Sau96I	GGNCC	3 cut(s)	150, 605, 614
SchI	GAGTC	4 cut(s)	65, 136, 139, 964
ScrFI	CCNGG	2 cut(s)	258, 788
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	5 cut(s)	374, 392, 466, 488, 745
SfcI	CTRYAG	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	930
SinI	GGWCC	2 cut(s)	150, 605
SmiMI	CAYNNNNRTG	1 cut(s)	836
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	8 cut(s)	139, 340, 417, 500, 514, 844, 884, 908
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	4 cut(s)	8, 198, 509, 804
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	256, 786
TaaI	ACNGT	3 cut(s)	428, 474, 566
TaiI	ACGT	3 cut(s)	192, 250, 828
TaqI	TCGA	4 cut(s)	143, 174, 705, 930
TaqII	GACCGA	1 cut(s)	622
TasI	AATT	8 cut(s)	139, 340, 417, 500, 514, 844, 884, 908
TfiI	GAWTC	5 cut(s)	106, 521, 548, 874, 916
TscAI	CASTG	6 cut(s)	160, 231, 268, 569, 783, 980
TseI	GCWGC	4 cut(s)	132, 135, 276, 812
TspDTI	ATGAA	2 cut(s)	95, 837
TspGWI	ACGGA	2 cut(s)	371, 406
TspRI	CASTG	6 cut(s)	160, 231, 268, 569, 783, 980
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	150, 605
XapI	RAATTY	4 cut(s)	340, 417, 844, 908
XceI	RCATGY	1 cut(s)	796
XmiI	GTMKAC	2 cut(s)	186, 584
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.