Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Reverse (-)

25530820 .. 25540590

Gene Structure 9771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG166200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGGCGGTGAATGTTCAACCAATACAAGCGAGGAGGCCTTACGAGGGAGAAGAGTCGGAAGGGGACTATGTCGCCATGAATAACGGAGCCGGAGCGAATCCTTCTCAAGTCACAATGAGTCGCTGCAGCAATTCCACTCGCACCAGTGAGCTCACCATCGCCTTCGAGGGCGAGGTCTACGTTTTTCCCGCCGTTACTCCCGATAAGGTTCAAGCAGTGCTGTTGCTACTGGGAGGACGTGATATACCAGGCAGTGATATACCAAGCAGCGTTCCTAGCTCTGGGTTTTCGCTACAACAGAATAGCAGGGGTATAGGGGACATCTCACGAAATTCAAAACTTTCACGAAGATTTGCGTCTCTTGTTAGGTTCCGTGAAAAACGGAAAGAGAGATGCTTTGACAAGAAAATTCGGTACAGTTGTCGTAAAGACATTGCGGAGAGAATGCATCGGAAGAATGGACAGTTTGCATCTTTGAAGGATCCTTCCAAATTGGTTGCGGGGAATTGTGATTCAAGTGATAGCACTTCTTGTCCAGAATCTGTCTTACGTAGATGTCAGCACTGTGGGATTAGTGAAAAGTCTACCCCAGCAATGCGGCGGGGACCAAATGGCCCAAGATCTCTCTGTAATGCTTGTGGTCTTAGGTGGGCAAATAAGGGAACTTTGAGAGATCTTACAAAATCAGGGAGGGATGTTTCTTTCGACCAAAATGAGCTGGAAAGCCCAGAGGAGAATAAGCCTATTGCATTGGATGCTGAAGTCCCTCCTCTGAGACTGGGCGACCAGGAGATGCTTGAAACTGCTGAAGCTGCTACTAATCACGTATCCATCCAAATGGAGAATTCATCAGTCAACCTTGATGAGCAGGTACTCTTTCTAGGCTCAACATTGACTAGATGGTTTGGCCAGTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

307

Amino Acids

33.96

Weight (kDa)

8.04

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	49 - 79	5.9e-10	tify domain
CCT	PF06203	118 - 159	2.1e-14	CCT motif
Jas_motif	PF09425	118 - 141	2.3e-06	Jas motif
GATA	PF00320	187 - 223	1.5e-12	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	862
AccI	GTMKAC	2 cut(s)	180, 587
AciI	CCGC	6 cut(s)	8, 192, 440, 503, 601, 604
AclWI	GGATC	2 cut(s)	479, 492
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	3 cut(s)	334, 411, 847
AcuI	CTGAAG	2 cut(s)	783, 831
AfaI	GTAC	2 cut(s)	419, 876
AfiI	CCNNNNNNNGG	2 cut(s)	47, 284
AgsI	TTSAA	6 cut(s)	20, 215, 339, 481, 519, 803
AjiI	CACGTC	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	250, 789
AluBI	AGCT	4 cut(s)	154, 282, 721, 815
AluI	AGCT	4 cut(s)	154, 282, 721, 815
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	366, 772
AlwI	GGATC	2 cut(s)	479, 492
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	3 cut(s)	38, 616, 910
ApeKI	GCWGC	4 cut(s)	126, 129, 270, 815
ApoI	RAATTY	3 cut(s)	334, 411, 847
AspS9I	GGNCC	2 cut(s)	608, 617
AsuHPI	GGTGA	2 cut(s)	22, 148
AvaII	GGWCC	1 cut(s)	608
BaeI	ACNNNNGTAYC	2 cut(s)	409, 442
BalI	TGGCCA	1 cut(s)	912
BamHI	GGATCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	113, 141, 282, 802
BccI	CCATC	3 cut(s)	167, 842, 897
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	2 cut(s)	252, 791
BciVI	GTATCC	1 cut(s)	841
BcoDI	GTCTC	2 cut(s)	366, 772
BfaI	CTAG	3 cut(s)	279, 884, 900
BfmI	CTRYAG	1 cut(s)	127
BfuAI	ACCTGC	1 cut(s)	862
BfuI	GTATCC	1 cut(s)	841
BglII	AGATCT	2 cut(s)	623, 676
BisI	GCNGC	5 cut(s)	127, 130, 271, 602, 816
BlsI	GCNGC	5 cut(s)	128, 131, 272, 603, 817
Bme1390I	CCNGG	2 cut(s)	252, 791
Bme18I	GGWCC	1 cut(s)	608
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	608, 617
BmiI	GGNNCC	4 cut(s)	91, 374, 486, 609
BmrFI	CCNGG	2 cut(s)	252, 791
BmrI	ACTGGG	2 cut(s)	242, 791
BmsI	GCATC	5 cut(s)	386, 460, 482, 748, 786
BmuI	ACTGGG	2 cut(s)	242, 791
BpuEI	CTTGAG	1 cut(s)	93
BsaAI	YACGTR	2 cut(s)	554, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 284
Bse1I	ACTGG	4 cut(s)	147, 237, 786, 913
Bse3DI	GCAATG	2 cut(s)	435, 603
BseBI	CCWGG	2 cut(s)	252, 791
BseGI	GGATG	3 cut(s)	703, 763, 834
BseLI	CCNNNNNNNGG	2 cut(s)	47, 284
BseMI	GCAATG	2 cut(s)	435, 603
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	4 cut(s)	147, 237, 786, 913
BseRI	GAGGAG	3 cut(s)	49, 749, 762
BseXI	GCAGC	4 cut(s)	113, 141, 282, 802
BseYI	CCCAGC	1 cut(s)	592
BshFI	GGCC	3 cut(s)	40, 618, 912
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	4 cut(s)	80, 335, 621, 752
BslI	CCNNNNNNNGG	2 cut(s)	47, 284
BsmAI	GTCTC	2 cut(s)	366, 772
BsmBI	CGTCTC	1 cut(s)	366
BsmFI	GGGAC	4 cut(s)	80, 335, 621, 752
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	40, 618, 912
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	484, 623, 676
BspACI	CCGC	6 cut(s)	8, 192, 440, 503, 601, 604
BspANI	GGCC	3 cut(s)	40, 618, 912
BspCNI	CTCAG	1 cut(s)	768
BspLI	GGNNCC	4 cut(s)	91, 374, 486, 609
BspMAI	CTGCAG	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	862
BspPI	GGATC	2 cut(s)	479, 492
BsrDI	GCAATG	2 cut(s)	435, 603
BsrI	ACTGG	4 cut(s)	147, 237, 786, 913
BssMI	GATC	3 cut(s)	484, 623, 676
Bst2UI	CCWGG	2 cut(s)	252, 791
Bst4CI	ACNGT	3 cut(s)	422, 468, 569
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstBAI	YACGTR	2 cut(s)	554, 829
BstDEI	CTNAG	2 cut(s)	647, 776
BstF5I	GGATG	3 cut(s)	703, 763, 834
BstKTI	GATC	3 cut(s)	487, 626, 679
BstMAI	GTCTC	2 cut(s)	366, 772
BstMBI	GATC	3 cut(s)	484, 623, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 758, 815
BstNI	CCWGG	2 cut(s)	252, 791
BstSCI	CCNGG	2 cut(s)	250, 789
BstSFI	CTRYAG	1 cut(s)	127
BstSNI	TACGTA	1 cut(s)	554
BstV1I	GCAGC	4 cut(s)	113, 141, 282, 802
BstX2I	RGATCY	3 cut(s)	484, 623, 676
BstXI	CCANNNNNNTGG	1 cut(s)	841
BstYI	RGATCY	3 cut(s)	484, 623, 676
BsuI	GTATCC	1 cut(s)	841
BsuRI	GGCC	3 cut(s)	40, 618, 912
BtgZI	GCGATG	1 cut(s)	145
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	703, 763, 834
BtsI	GCAGTG	2 cut(s)	225, 262
BtsIMutI	CAGTG	4 cut(s)	154, 225, 262, 565
BveI	ACCTGC	1 cut(s)	862
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	608, 617
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	418, 875
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	2 cut(s)	418, 875
DdeI	CTNAG	2 cut(s)	647, 776
DpnI	GATC	3 cut(s)	486, 625, 678
DpnII	GATC	3 cut(s)	484, 623, 676
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	154
Eco105I	TACGTA	1 cut(s)	554
Eco147I	AGGCCT	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	783, 831
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	250, 789
EcoT22I	ATGCAT	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	1 cut(s)	82
FaiI	YATR	5 cut(s)	72, 80, 248, 263, 317
FaqI	GGGAC	4 cut(s)	80, 335, 621, 752
FatI	CATG	1 cut(s)	78
FauI	CCCGC	3 cut(s)	199, 496, 597
FblI	GTMKAC	2 cut(s)	180, 587
Fnu4HI	GCNGC	5 cut(s)	127, 130, 271, 602, 816
FokI	GGATG	3 cut(s)	710, 770, 821
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	5 cut(s)	127, 130, 271, 602, 816
FspBI	CTAG	3 cut(s)	279, 884, 900
GluI	GCNGC	5 cut(s)	127, 130, 271, 602, 816
GsaI	CCCAGC	1 cut(s)	596
HaeIII	GGCC	3 cut(s)	40, 618, 912
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HinfI	GANTC	5 cut(s)	56, 100, 121, 515, 542
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	22, 148
Hpy166II	GTNNAC	3 cut(s)	181, 588, 859
Hpy188I	TCNGA	3 cut(s)	61, 456, 777
Hpy188III	TCNNGA	4 cut(s)	203, 330, 348, 539
Hpy8I	GTNNAC	3 cut(s)	181, 588, 859
HpyAV	CCTTC	5 cut(s)	56, 114, 175, 475, 498
HpyCH4III	ACNGT	3 cut(s)	422, 468, 569
HpyCH4IV	ACGT	4 cut(s)	183, 241, 553, 828
HpyCH4V	TGCA	4 cut(s)	129, 451, 473, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 758, 815
HpyF3I	CTNAG	2 cut(s)	647, 776
HpySE526I	ACGT	4 cut(s)	183, 241, 553, 828
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	484, 623, 676
LmnI	GCTCC	2 cut(s)	89, 95
Lsp1109I	GCAGC	4 cut(s)	113, 141, 282, 802
LweI	GCATC	5 cut(s)	386, 460, 482, 748, 786
MaeI	CTAG	3 cut(s)	279, 884, 900
MaeII	ACGT	4 cut(s)	183, 241, 553, 828
MaeIII	GTNAC	2 cut(s)	112, 196
MalI	GATC	3 cut(s)	486, 625, 678
MboI	GATC	3 cut(s)	484, 623, 676
MboII	GAAGA	3 cut(s)	65, 363, 469
MflI	RGATCY	3 cut(s)	484, 623, 676
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	6 cut(s)	133, 334, 411, 494, 508, 847
MluNI	TGGCCA	1 cut(s)	912
MlyI	GAGTC	2 cut(s)	65, 130
MmeI	TCCRAC	1 cut(s)	39
Mox20I	TGGCCA	1 cut(s)	912
Mph1103I	ATGCAT	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	912
MslI	CAYNNNNRTG	1 cut(s)	839
Msp20I	TGGCCA	1 cut(s)	912
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	252, 791
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	252, 791
MwoI	GCNNNNNNNGC	3 cut(s)	279, 758, 815
NdeII	GATC	3 cut(s)	484, 623, 676
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	4 cut(s)	91, 374, 486, 609
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	100, 515, 542
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	128, 131, 272, 603, 817
PleI	GAGTC	2 cut(s)	64, 129
PpsI	GAGTC	2 cut(s)	64, 129
Ppu21I	YACGTR	2 cut(s)	554, 829
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	250, 789
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	2 cut(s)	250, 789
PspN4I	GGNNCC	4 cut(s)	91, 374, 486, 609
PspPI	GGNCC	2 cut(s)	608, 617
PstI	CTGCAG	1 cut(s)	131
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	3 cut(s)	484, 623, 676
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	419, 876
RsaNI	GTAC	2 cut(s)	418, 875
RseI	CAYNNNNRTG	1 cut(s)	839
SacI	GAGCTC	1 cut(s)	156
SatI	GCNGC	5 cut(s)	127, 130, 271, 602, 816
Sau3AI	GATC	3 cut(s)	484, 623, 676
Sau96I	GGNCC	2 cut(s)	608, 617
SchI	GAGTC	2 cut(s)	65, 130
ScrFI	CCNGG	2 cut(s)	252, 791
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	5 cut(s)	386, 460, 482, 748, 786
SfcI	CTRYAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
SnaBI	TACGTA	1 cut(s)	554
Sse9I	AATT	6 cut(s)	133, 334, 411, 494, 508, 847
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	6 cut(s)	8, 192, 440, 503, 601, 604
SspMI	CTAG	3 cut(s)	279, 884, 900
SstI	GAGCTC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	250, 789
TaaI	ACNGT	3 cut(s)	422, 468, 569
TaiI	ACGT	4 cut(s)	186, 244, 556, 831
TaqI	TCGA	2 cut(s)	168, 708
TasI	AATT	6 cut(s)	133, 334, 411, 494, 508, 847
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	3 cut(s)	100, 515, 542
TscAI	CASTG	4 cut(s)	154, 225, 262, 572
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	4 cut(s)	126, 129, 270, 815
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	95, 840
TspGWI	ACGGA	3 cut(s)	102, 365, 400
TspRI	CASTG	4 cut(s)	154, 225, 262, 572
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	3 cut(s)	334, 411, 847
XmiI	GTMKAC	2 cut(s)	180, 587
XspI	CTAG	3 cut(s)	279, 884, 900
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.