Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

6071244 .. 6074683

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGATAACATCAGTGGCGGCGATGCGCCAATGCATATGAGCGATGAAGTGCATTTGCAATACATGCAAGAACATGAGCATCATCAGGGGTTGCATCAGATGAGCAATGGGAATGGGGTGGCTGATGATCATGATGATGGAAGTGGTGCTGATACTGGTGGTGCTGAGCTTTCCGAAGTTAATGTACAGTCTGAGCCCGTGAATCTCTCTGATACGCGTAGTGGGATGGTGGACCATAGCAGCAATAATGGGGACCAGCTCACATTGTCATTTCAGGGTCAGGTTTTTGTGTTTGACTCTGTGTCACCCGAGAAGGTTCAAGCTGTGTTGCTACTATTGGGGGGCCATGAAGTACCTCCAGGCATGCCTGCTGTTCCAGTAACCACCCAGCATGATAATAGGGCCCTTACTAGTATTCCACAACGGTTGAGTGTCCCTCAAAGACTGGCTTCACTTATTAGATTCCGTGAAAAACGAAAAGAAAGAAATTTCGACAAGAAGATTCGTTATACTGTTCGCAAAGAGGTAGCACTTAGGATGCAACGAAAGAAAGGTCAATTTACATCTTCTAAGCCCAACAGTGATGATTCTGCATCAGCTATCACAAGTTGGGGCTCAAACGAGAACTTGGATCAGGATGGTAATGGATCCATTCCTCAAGAGGCTGTCTGTCGACACTGTGGCACCAATGAGAAGTGTACACCAATGATGCGACGTGGACCCGATGGACCAAGAACCCTTTGCAATGCATGTGGACTTATGTGGGCAAACAAGAGGGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

262

Amino Acids

28.71

Weight (kDa)

5.99

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	85 - 114	7e-12	tify domain
Jas_motif	PF09425	147 - 170	4.4e-07	Jas motif
CCT	PF06203	148 - 190	1.1e-14	CCT motif
GATA	PF00320	224 - 260	1.1e-12	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	673
AccII	CGCG	1 cut(s)	217
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	3 cut(s)	639, 642, 655
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	3 cut(s)	186, 354, 700
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	320
AhdI	GACNNNNNGTC	1 cut(s)	301
AhlI	ACTAGT	1 cut(s)	410
AjiI	CACGTC	1 cut(s)	716
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	169, 259, 323, 599
AluI	AGCT	4 cut(s)	169, 259, 323, 599
AlwI	GGATC	3 cut(s)	639, 642, 655
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	343, 402
ApaI	GGGCCC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	538, 570
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	7 cut(s)	232, 253, 343, 402, 403, 719, 728
AsuHPI	GGTGA	1 cut(s)	297
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	4 cut(s)	232, 253, 719, 728
BaeGI	GKGCMC	1 cut(s)	406
BamHI	GGATCC	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	3 cut(s)	198, 406, 617
BarI	GAAGNNNNNNTAC	2 cut(s)	168, 200
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	4 cut(s)	131, 220, 632, 719
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	127
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	1 cut(s)	411
BisI	GCNGC	2 cut(s)	19, 241
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	20, 242
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	4 cut(s)	232, 253, 719, 728
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	308
BmgBI	CACGTC	1 cut(s)	716
BmgT120I	GGNCC	7 cut(s)	232, 253, 343, 402, 403, 719, 728
BmiI	GGNNCC	6 cut(s)	254, 344, 404, 649, 685, 721
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	6 cut(s)	13, 88, 103, 528, 602, 699
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	642
Bse1I	ACTGG	3 cut(s)	160, 377, 450
Bse3DI	GCAATG	2 cut(s)	112, 751
BseBI	CCWGG	1 cut(s)	360
BseGI	GGATG	3 cut(s)	231, 543, 643
BseMI	GCAATG	2 cut(s)	112, 751
BseMII	CTCAG	2 cut(s)	156, 183
BseNI	ACTGG	3 cut(s)	160, 377, 450
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	252
BseYI	CCCAGC	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	345, 404
BshNI	GGYRCC	1 cut(s)	683
BsiHKCI	CYCGRG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	266, 419
BsmFI	GGGAC	2 cut(s)	266, 419
BsnI	GGCC	2 cut(s)	345, 404
BsoBI	CYCGRG	1 cut(s)	308
Bsp120I	GGGCCC	1 cut(s)	402
Bsp1286I	GDGCHC	3 cut(s)	198, 406, 617
Bsp1407I	TGTACA	2 cut(s)	184, 698
Bsp143I	GATC	3 cut(s)	127, 631, 647
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	345, 404
BspCNI	CTCAG	2 cut(s)	157, 184
BspFNI	CGCG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	6 cut(s)	254, 344, 404, 649, 685, 721
BspPI	GGATC	3 cut(s)	639, 642, 655
BspT107I	GGYRCC	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	112, 751
BsrGI	TGTACA	2 cut(s)	184, 698
BsrI	ACTGG	3 cut(s)	160, 377, 450
BssMI	GATC	3 cut(s)	127, 631, 647
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	5 cut(s)	189, 426, 514, 581, 680
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstAUI	TGTACA	2 cut(s)	184, 698
BstC8I	GCNNGC	2 cut(s)	365, 369
BstDEI	CTNAG	4 cut(s)	165, 192, 533, 570
BstF5I	GGATG	3 cut(s)	231, 543, 643
BstFNI	CGCG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	130, 634, 650
BstMBI	GATC	3 cut(s)	127, 631, 647
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	3 cut(s)	67, 367, 753
BstSCI	CCNGG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	406
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	2 cut(s)	345, 404
BtgZI	GCGATG	2 cut(s)	36, 57
BtrI	CACGTC	1 cut(s)	716
BtsCI	GGATG	3 cut(s)	231, 543, 643
BtsIMutI	CAGTG	3 cut(s)	19, 586, 676
Cac8I	GCNNGC	2 cut(s)	365, 369
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	7 cut(s)	232, 253, 343, 402, 403, 719, 728
Csp6I	GTAC	3 cut(s)	185, 353, 699
CspCI	CAANNNNNGTGG	4 cut(s)	408, 443, 733, 768
CviAII	CATG	7 cut(s)	64, 74, 131, 347, 364, 392, 750
CviQI	GTAC	3 cut(s)	185, 353, 699
DdeI	CTNAG	4 cut(s)	165, 192, 533, 570
DpnI	GATC	3 cut(s)	129, 633, 649
DpnII	GATC	3 cut(s)	127, 631, 647
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	1 cut(s)	301
Eco24I	GRGCYC	3 cut(s)	198, 406, 617
Eco47I	GGWCC	4 cut(s)	232, 253, 719, 728
Eco88I	CYCGRG	1 cut(s)	308
EcoO109I	RGGNCCY	2 cut(s)	402, 403
EcoRII	CCWGG	1 cut(s)	358
EcoT22I	ATGCAT	2 cut(s)	36, 751
EcoT38I	GRGCYC	3 cut(s)	198, 406, 617
FaeI	CATG	7 cut(s)	67, 77, 134, 350, 367, 395, 753
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	2 cut(s)	266, 419
FatI	CATG	7 cut(s)	63, 73, 130, 346, 363, 391, 749
FauNDI	CATATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	19, 241
FokI	GGATG	3 cut(s)	238, 550, 650
FriOI	GRGCYC	3 cut(s)	198, 406, 617
Fsp4HI	GCNGC	2 cut(s)	19, 241
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	19, 241
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	345, 404
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	7 cut(s)	67, 77, 134, 350, 367, 395, 753
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HinfI	GANTC	5 cut(s)	202, 296, 462, 502, 587
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	6 cut(s)	232, 674, 699, 701, 719, 755
Hpy188I	TCNGA	4 cut(s)	99, 175, 193, 211
Hpy188III	TCNNGA	3 cut(s)	131, 635, 659
Hpy8I	GTNNAC	6 cut(s)	232, 674, 699, 701, 719, 755
Hpy99I	CGWCG	1 cut(s)	717
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	5 cut(s)	189, 426, 514, 581, 680
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	9 cut(s)	34, 52, 58, 67, 94, 541, 593, 744, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	4 cut(s)	165, 192, 533, 570
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	7 cut(s)	67, 77, 134, 350, 367, 395, 753
HspAI	GCGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	127, 631, 647
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	6 cut(s)	13, 88, 103, 528, 602, 699
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	2 cut(s)	303, 379
MalI	GATC	3 cut(s)	129, 633, 649
MboI	GATC	3 cut(s)	127, 631, 647
MboII	GAAGA	2 cut(s)	511, 558
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	3 cut(s)	198, 406, 617
MluCI	AATT	2 cut(s)	487, 557
MluI	ACGCGT	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	366, 447, 517, 655, 666, 768
Mph1103I	ATGCAT	2 cut(s)	36, 751
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeI	CATATG	1 cut(s)	36
NdeII	GATC	3 cut(s)	127, 631, 647
NlaIII	CATG	7 cut(s)	67, 77, 134, 350, 367, 395, 753
NlaIV	GGNNCC	6 cut(s)	254, 344, 404, 649, 685, 721
NmuCI	GTSAC	1 cut(s)	303
NsiI	ATGCAT	2 cut(s)	36, 751
NspI	RCATGY	3 cut(s)	67, 367, 753
PaeI	GCATGC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	130
PfeI	GAWTC	4 cut(s)	202, 462, 502, 587
PkrI	GCNGC	2 cut(s)	20, 242
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	6 cut(s)	254, 344, 404, 649, 685, 721
PspOMI	GGGCCC	1 cut(s)	402
PspPI	GGNCC	7 cut(s)	232, 253, 343, 402, 403, 719, 728
PsuI	RGATCY	1 cut(s)	647
RsaI	GTAC	3 cut(s)	186, 354, 700
RsaNI	GTAC	3 cut(s)	185, 353, 699
RseI	CAYNNNNRTG	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	672
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	19, 241
Sau3AI	GATC	3 cut(s)	127, 631, 647
Sau96I	GGNCC	7 cut(s)	232, 253, 343, 402, 403, 719, 728
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	3 cut(s)	198, 406, 617
SfaNI	GCATC	6 cut(s)	13, 88, 103, 528, 602, 699
SinI	GGWCC	4 cut(s)	232, 253, 719, 728
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
SpeI	ACTAGT	1 cut(s)	410
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	2 cut(s)	487, 557
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	5 cut(s)	189, 426, 514, 581, 680
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	2 cut(s)	492, 673
TasI	AATT	2 cut(s)	487, 557
TatI	WGTACW	2 cut(s)	184, 698
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	4 cut(s)	202, 462, 502, 587
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	19, 586, 683
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	60, 363
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	3 cut(s)	19, 586, 683
VpaK11BI	GGWCC	4 cut(s)	232, 253, 719, 728
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	3 cut(s)	67, 367, 753
XmiI	GTMKAC	1 cut(s)	673
XspI	CTAG	1 cut(s)	411
Zsp2I	ATGCAT	2 cut(s)	36, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.