FvH4_2g11520

GATA transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
10076685 .. 10084081
7397 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11520.t12

Sequence Viewer

Length: 996 bp
ATGATGGAGGCGGTGGATGTTGAACCAATACAAGCGAGGCCTTACGAGGGCGAAGAGTCGGAAGGCGAGGCGGCCGTGAGTCGGACCAGTGAGCTCACCATCGCCTTCGAGGGCGAGGTCTTCGTTTTCCCCGCCGTTACTCCCGACAAGGTACGAGCAGTGCTCTTGCTATTAGGAGCACGTGATATACCAGCCAGCCATATACCAAGCAGCGTCCCTAGCTCTGGGTTTTCTCTACAACAGAATAGCATGGGCATAGGTGACATCTCACGAAATTCAAAACTTTCACGAAGATTTGCATCTCTTGTTAGGTTCCGTGAAAAACGGAAAGAGAGGTGCTTTGACAAGAAAATTCGGTACACTTGCCGTAAAGACATTGCTGAGAGAATGCATCGGAAGAATGGACAGTTTGCATCTTTGAAGGATCCTTTCAAACCGGTTGCGGGAAATTGTGATTCAAGTGATAGCACTTCTTGTCCAGAATCTGTCTTACGTAGATGTCAGCACTGTGGGATTAGCGAAAAGTCTACCCCAGCAATGCGTCGGGGACCAAATGGCCCAAGATCTCTGTGTAATGCTTGTGGTCTCAGGTGGGCAAATAAAGGAACATTGAGAGATCTTACAAAAGCAGGGAGGGATATTTCTTTTGACCAAAATGAGCTGGAAAGCCCAGAGGAGAATAAGCCTATTGCATTGAATGCCGAAGTACCTCCTCTGAGACTGGGCGACCAGGACATGCTCGAGACAACTGAAGCTGGTAGGAATCAGGTATCCATTCAAATGGAGAATTCATCAGTCAACCTTGATGAGCAGGACATGCGTAAGGGGGAAAGTTCAGAATGGATCATTGCCCTACATACAAAGAACCCTTCCAATGATGAATATTCAATCCAGAAGCAGCTAAAAAAAAAACTGTCGACAAACCTGCTGATCTTTCGGTTGTCCAATATAAATGGGGATTTAGTGATCTTGCTATTAAGTGGAGGGATAGTGTGA

Protein Analysis

332

Amino Acids

36.78

Weight (kDa)

8.07

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 29 - 59 4.6e-09 tify domain
CCT PF06203 98 - 139 2.6e-14 CCT motif
Jas_motif PF09425 98 - 120 1.6e-06 Jas motif
GATA PF00320 167 - 203 1.3e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 933
AccI GTMKAC 2 cut(s) 527, 917
AciI CCGC 4 cut(s) 11, 71, 132, 443
AclWI GGATC 3 cut(s) 419, 432, 851
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 3 cut(s) 274, 351, 787
AcuI CTGAAG 1 cut(s) 771
AcvI CACGTG 1 cut(s) 182
AfaI GTAC 3 cut(s) 153, 359, 708
AfiI CCNNNNNNNGG 4 cut(s) 47, 81, 224, 443
AgeI ACCGGT 1 cut(s) 436
AgsI TTSAA 8 cut(s) 23, 279, 421, 433, 459, 697, 779, 888
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 5 cut(s) 94, 222, 661, 755, 901
AluI AGCT 5 cut(s) 94, 222, 661, 755, 901
Alw21I GWGCWC 3 cut(s) 96, 165, 181
Alw26I GTCTC 3 cut(s) 590, 712, 737
AlwI GGATC 3 cut(s) 419, 432, 851
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 740
AoxI GGCC 3 cut(s) 38, 72, 556
ApeKI GCWGC 2 cut(s) 210, 898
ApoI RAATTY 3 cut(s) 274, 351, 787
AsiGI ACCGGT 1 cut(s) 436
AspS9I GGNCC 3 cut(s) 84, 548, 557
AsuHPI GGTGA 2 cut(s) 88, 272
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 2 cut(s) 84, 548
BamHI GGATCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 96
BbrPI CACGTG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 3 cut(s) 96, 165, 181
BbvI GCAGC 2 cut(s) 222, 910
BccI CCATC 1 cut(s) 107
BceAI ACGGC 3 cut(s) 59, 119, 351
BcgI CGANNNNNNTGC 2 cut(s) 907, 941
BciT130I CCWGG 1 cut(s) 731
BciVI GTATCC 1 cut(s) 781
BcoDI GTCTC 3 cut(s) 590, 712, 737
BfaI CTAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 933
BfuI GTATCC 1 cut(s) 781
BglII AGATCT 2 cut(s) 563, 616
BisI GCNGC 3 cut(s) 72, 211, 899
BlsI GCNGC 3 cut(s) 73, 212, 900
Bme1390I CCNGG 1 cut(s) 731
Bme18I GGWCC 2 cut(s) 84, 548
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 3 cut(s) 84, 548, 557
BmiI GGNNCC 3 cut(s) 314, 426, 549
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 1 cut(s) 731
BmsI GCATC 3 cut(s) 308, 400, 422
BmuI ACTGGG 1 cut(s) 731
BpiI GAAGAC 1 cut(s) 112
BplI GAGNNNNNCTC 2 cut(s) 147, 179
BsaAI YACGTR 2 cut(s) 182, 494
BsaBI GATNNNNATC 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 590
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 1 cut(s) 975
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 81, 224, 443
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 2 cut(s) 87, 726
Bse3DI GCAATG 3 cut(s) 375, 543, 846
Bse8I GATNNNNATC 1 cut(s) 298
BseBI CCWGG 1 cut(s) 731
BseGI GGATG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 298
BseLI CCNNNNNNNGG 4 cut(s) 47, 81, 224, 443
BseMI GCAATG 3 cut(s) 375, 543, 846
BseMII CTCAG 3 cut(s) 372, 601, 707
BseNI ACTGG 2 cut(s) 87, 726
BseRI GAGGAG 2 cut(s) 689, 702
BseX3I CGGCCG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 222, 910
BseYI CCCAGC 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 40, 74, 558
BshTI ACCGGT 1 cut(s) 436
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 3 cut(s) 96, 165, 181
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 2 cut(s) 200, 561
BslI CCNNNNNNNGG 4 cut(s) 47, 81, 224, 443
BsmAI GTCTC 3 cut(s) 590, 712, 737
BsmFI GGGAC 2 cut(s) 200, 561
BsmI GAATGC 2 cut(s) 393, 703
BsnI GGCC 3 cut(s) 40, 74, 558
Bso31I GGTCTC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 3 cut(s) 96, 165, 181
Bsp143I GATC 6 cut(s) 424, 563, 616, 843, 930, 966
BspACI CCGC 4 cut(s) 11, 71, 132, 443
BspANI GGCC 3 cut(s) 40, 74, 558
BspCNI CTCAG 3 cut(s) 373, 600, 708
BspLI GGNNCC 3 cut(s) 314, 426, 549
BspMI ACCTGC 1 cut(s) 933
BspPI GGATC 3 cut(s) 419, 432, 851
BspTNI GGTCTC 1 cut(s) 590
BsrDI GCAATG 3 cut(s) 375, 543, 846
BsrFI RCCGGY 1 cut(s) 436
BsrI ACTGG 2 cut(s) 87, 726
BssAI RCCGGY 1 cut(s) 436
BssMI GATC 6 cut(s) 424, 563, 616, 843, 930, 966
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 3 cut(s) 408, 509, 915
Bst6I CTCTTC 1 cut(s) 48
BstAPI GCANNNNNTGC 2 cut(s) 698, 817
BstBAI YACGTR 2 cut(s) 182, 494
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 3 cut(s) 381, 587, 716
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 6 cut(s) 427, 566, 619, 846, 933, 969
BstMAI GTCTC 3 cut(s) 590, 712, 737
BstMBI GATC 6 cut(s) 424, 563, 616, 843, 930, 966
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 219, 698, 817
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 2 cut(s) 739, 820
BstSCI CCNGG 1 cut(s) 729
BstSNI TACGTA 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 222, 910
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 3 cut(s) 424, 563, 616
BstXI CCANNNNNNTGG 1 cut(s) 781
BstYI RGATCY 3 cut(s) 424, 563, 616
BstZI CGGCCG 1 cut(s) 72
BsuI GTATCC 1 cut(s) 781
BsuRI GGCC 3 cut(s) 40, 74, 558
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 3 cut(s) 94, 165, 505
BveI ACCTGC 1 cut(s) 933
Cac8I GCNNGC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 485
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 3 cut(s) 84, 548, 557
CseI GACGC 2 cut(s) 202, 530
Csp6I GTAC 3 cut(s) 152, 358, 707
CspAI ACCGGT 1 cut(s) 436
CviAII CATG 3 cut(s) 250, 736, 817
CviQI GTAC 3 cut(s) 152, 358, 707
DdeI CTNAG 3 cut(s) 381, 587, 716
DpnI GATC 6 cut(s) 426, 565, 618, 845, 932, 968
DpnII GATC 6 cut(s) 424, 563, 616, 843, 930, 966
EaeI YGGCCR 1 cut(s) 72
EagI CGGCCG 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 94
EclXI CGGCCG 1 cut(s) 72
Eco105I TACGTA 1 cut(s) 494
Eco147I AGGCCT 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 590
Eco47I GGWCC 2 cut(s) 84, 548
Eco52I CGGCCG 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 771
Eco72I CACGTG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 740
EcoICRI GAGCTC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 3 cut(s) 253, 739, 820
FaiI YATR 9 cut(s) 188, 201, 203, 251, 257, 737, 818, 858, 950
FaqI GGGAC 2 cut(s) 200, 561
FatI CATG 3 cut(s) 249, 735, 816
FauI CCCGC 2 cut(s) 139, 436
FblI GTMKAC 2 cut(s) 527, 917
Fnu4HI GCNGC 3 cut(s) 72, 211, 899
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 72, 211, 899
FspBI CTAG 1 cut(s) 219
GluI GCNGC 3 cut(s) 72, 211, 899
GsaI CCCAGC 1 cut(s) 536
HaeIII GGCC 3 cut(s) 40, 74, 558
HapII CCGG 1 cut(s) 437
HgaI GACGC 2 cut(s) 202, 530
Hin1II CATG 3 cut(s) 253, 739, 820
HincII GTYRAC 2 cut(s) 799, 918
HindII GTYRAC 2 cut(s) 799, 918
HinfI GANTC 5 cut(s) 56, 79, 455, 482, 763
HpaII CCGG 1 cut(s) 437
HphI GGTGA 2 cut(s) 88, 272
Hpy166II GTNNAC 4 cut(s) 360, 528, 799, 918
Hpy188I TCNGA 5 cut(s) 61, 84, 396, 717, 838
Hpy188III TCNNGA 6 cut(s) 143, 270, 288, 479, 742, 892
Hpy8I GTNNAC 4 cut(s) 360, 528, 799, 918
Hpy99I CGWCG 1 cut(s) 546
HpyAV CCTTC 4 cut(s) 56, 115, 415, 879
HpyCH4III ACNGT 3 cut(s) 408, 509, 915
HpyCH4IV ACGT 2 cut(s) 181, 493
HpyCH4V TGCA 4 cut(s) 299, 391, 413, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 698, 817
HpyF3I CTNAG 3 cut(s) 381, 587, 716
HpySE526I ACGT 2 cut(s) 181, 493
Hsp92II CATG 3 cut(s) 253, 739, 820
Kzo9I GATC 6 cut(s) 424, 563, 616, 843, 930, 966
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 2 cut(s) 222, 910
LweI GCATC 3 cut(s) 308, 400, 422
MaeI CTAG 1 cut(s) 219
MaeII ACGT 2 cut(s) 181, 493
MaeIII GTNAC 2 cut(s) 136, 260
MalI GATC 6 cut(s) 426, 565, 618, 845, 932, 968
MboI GATC 6 cut(s) 424, 563, 616, 843, 930, 966
MboII GAAGA 4 cut(s) 65, 112, 303, 409
MflI RGATCY 3 cut(s) 424, 563, 616
MhlI GDGCHC 3 cut(s) 96, 165, 181
MluCI AATT 4 cut(s) 274, 351, 448, 787
MlyI GAGTC 2 cut(s) 65, 88
MmeI TCCRAC 2 cut(s) 39, 62
Mph1103I ATGCAT 1 cut(s) 393
MseI TTAA 1 cut(s) 977
MslI CAYNNNNRTG 1 cut(s) 779
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 731
Mva1269I GAATGC 2 cut(s) 393, 703
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 3 cut(s) 219, 698, 817
NdeII GATC 6 cut(s) 424, 563, 616, 843, 930, 966
NlaIII CATG 3 cut(s) 253, 739, 820
NlaIV GGNNCC 3 cut(s) 314, 426, 549
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 2 cut(s) 739, 820
PaeR7I CTCGAG 1 cut(s) 740
PceI AGGCCT 1 cut(s) 40
PctI GAATGC 2 cut(s) 393, 703
PfeI GAWTC 3 cut(s) 455, 482, 763
PinAI ACCGGT 1 cut(s) 436
PkrI GCNGC 3 cut(s) 73, 212, 900
PleI GAGTC 2 cut(s) 64, 87
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
PpsI GAGTC 2 cut(s) 64, 87
Ppu21I YACGTR 2 cut(s) 182, 494
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 729
PspCI CACGTG 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 3 cut(s) 314, 426, 549
PspPI GGNCC 3 cut(s) 84, 548, 557
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 3 cut(s) 424, 563, 616
RsaI GTAC 3 cut(s) 153, 359, 708
RsaNI GTAC 3 cut(s) 152, 358, 707
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 916
SaqAI TTAA 1 cut(s) 977
SatI GCNGC 3 cut(s) 72, 211, 899
Sau3AI GATC 6 cut(s) 424, 563, 616, 843, 930, 966
Sau96I GGNCC 3 cut(s) 84, 548, 557
SchI GAGTC 2 cut(s) 65, 88
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 3 cut(s) 96, 165, 181
SfaNI GCATC 3 cut(s) 308, 400, 422
Sfr274I CTCGAG 1 cut(s) 740
SinI GGWCC 2 cut(s) 84, 548
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
SnaBI TACGTA 1 cut(s) 494
Sse9I AATT 4 cut(s) 274, 351, 448, 787
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 4 cut(s) 11, 71, 132, 443
SspI AATATT 1 cut(s) 884
SspMI CTAG 1 cut(s) 219
SstI GAGCTC 1 cut(s) 96
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 729
TaaI ACNGT 3 cut(s) 408, 509, 915
TaiI ACGT 2 cut(s) 184, 496
TaqI TCGA 3 cut(s) 108, 741, 917
TasI AATT 4 cut(s) 274, 351, 448, 787
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 3 cut(s) 455, 482, 763
Tru1I TTAA 1 cut(s) 977
Tru9I TTAA 1 cut(s) 977
TscAI CASTG 3 cut(s) 94, 165, 512
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 2 cut(s) 210, 898
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 780, 894
TspGWI ACGGA 2 cut(s) 305, 340
TspRI CASTG 3 cut(s) 94, 165, 512
VpaK11BI GGWCC 2 cut(s) 84, 548
XapI RAATTY 3 cut(s) 274, 351, 787
XceI RCATGY 2 cut(s) 739, 820
XhoI CTCGAG 1 cut(s) 740
XmiI GTMKAC 2 cut(s) 527, 917
XspI CTAG 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.