MD15G1387800.v1.1

GATA transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
47997342 .. 48001757
4416 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1387800.v1.1.491

Sequence Viewer

Length: 1068 bp
ATGGCGGCCGTCAATCCACAGCCTCTGCAAGCTCGACCAATCGAGGAGCGCGGGAGGGGTCCAATACAGGTAGAAGACGATGACGGTGATTACGAAGATGGTGGTGATGATGGTATGGAGGACATGGAAGAGGTGCATGTGAACTCCGTTAGCGTTGAGAAGTGTGCAGGAGGTGGGGGTGGAGGTGGAGGTGGAGGTGTGGTTATGGCTTCCAGGACCAGTGAGCTCACTCTGTCCTTTGAAGGCGAGGTGTATGTCTTCCCTGCTGTTACACCTGAGAAGGTGCAAGCAGTGCTCTTGCTGTTGGGAGGACGTGATGTACCAACTGGCATGCCCACAGTTGAAGTGTCTTCTGATCAGAATACAAGGGGTGTGGGTGACACTCCAAAGCGTTCAAATCTTTCGCGAAGAATAGCTTCCCTGGTCAGGTTTCGTGAAAAACGGAAGGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTGCGTAAAGAGGTTGCACAGAGGATGCTTCGTAAGAATGGACAGTTTGCATCGTTAAAACAAACTTCAGGTGCTTCTAGTTGGGAATCGACTCAGAGTTTCCTTCAAGATGGCACTCCTCAACCAGAAACTGTCTTACGGAGATGTCAACATTGTGGAGTTAGTGAAAATAATACACCTGCAATGCGCCGTGGACCTGCTGGCCCAAGAACTTTATGTAATGCATGTGGTCTTATGTGGGCGAATAAGGGAACATTGAGAGATCTCAGCAAAAGTGGAAGGAACCTTACTGTCGACCATATAGAACCTGGGATGTCGATTGAAGCCAAGCCCTTAATTGTTGAAGGAGAAATTTCCAGAAGCCAGGATGAGCATGGTACTCTTGGTCGTCTTTCAAAAAAAGTTGATGAAGGATCCAATGATGCTTCTGTCAACCCAGATGAGGAAGATTCGCAGGAAACTGCAGAAGATCTTACAAACAGTTTTCCAATGGGGATTGTTTCTCCAGCCAATGATGAGCAGGAGCCGCTGGCTGAGCTTGCAAATCCTTCGGATACAGATATAGACATCACTACTAATTTTGATTAG

Protein Analysis

356

Amino Acids

38.42

Weight (kDa)

4.84

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 72 - 103 3.3e-10 tify domain
CCT PF06203 137 - 178 5.9e-14 CCT motif
Jas_motif PF09425 137 - 159 7e-07 Jas motif
GATA PF00320 209 - 245 2.3e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 2 cut(s) 667, 685
AccI GTMKAC 1 cut(s) 774
AccII CGCG 2 cut(s) 51, 406
AciI CCGC 3 cut(s) 5, 51, 1007
AclWI GGATC 2 cut(s) 888, 901
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 3 cut(s) 321, 476, 859
AfiI CCNNNNNNNGG 2 cut(s) 426, 922
AgsI TTSAA 7 cut(s) 242, 344, 396, 587, 803, 824, 876
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 4 cut(s) 212, 420, 787, 843
AluBI AGCT 4 cut(s) 32, 226, 416, 1018
AluI AGCT 4 cut(s) 32, 226, 416, 1018
Alw21I GWGCWC 2 cut(s) 228, 297
AlwI GGATC 2 cut(s) 888, 901
AlwNI CAGNNNCTG 2 cut(s) 25, 611
AoxI GGCC 2 cut(s) 6, 682
ApoI RAATTY 1 cut(s) 831
Asp700I GAANNNNTTC 1 cut(s) 415
AspLEI GCGC 2 cut(s) 51, 669
AspS9I GGNCC 4 cut(s) 59, 216, 674, 683
AsuHPI GGTGA 3 cut(s) 98, 116, 389
AvaII GGWCC 3 cut(s) 59, 216, 674
BamHI GGATCC 1 cut(s) 893
BanII GRGCYC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 751, 783
BbsI GAAGAC 3 cut(s) 81, 250, 342
Bbv12I GWGCWC 2 cut(s) 228, 297
BccI CCATC 3 cut(s) 92, 104, 584
BceAI ACGGC 1 cut(s) 654
BcgI CGANNNNNNTGC 2 cut(s) 1011, 1045
BciT130I CCWGG 4 cut(s) 214, 422, 789, 845
BciVI GTATCC 1 cut(s) 1027
BclI TGATCA 1 cut(s) 355
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 942
BfuAI ACCTGC 2 cut(s) 667, 685
BfuI GTATCC 1 cut(s) 1027
BglII AGATCT 2 cut(s) 742, 949
BisI GCNGC 2 cut(s) 6, 1007
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 2 cut(s) 7, 1008
Bme1390I CCNGG 4 cut(s) 214, 422, 789, 845
Bme18I GGWCC 3 cut(s) 59, 216, 674
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 4 cut(s) 59, 216, 674, 683
BmiI GGNNCC 4 cut(s) 60, 764, 895, 1005
BmrFI CCNGG 4 cut(s) 214, 422, 789, 845
BmsI GCATC 3 cut(s) 495, 539, 892
BpiI GAAGAC 3 cut(s) 81, 250, 342
BpmI CTGGAG 1 cut(s) 969
Bpu1102I GCTNAGC 1 cut(s) 1014
BsaJI CCNNGG 3 cut(s) 420, 670, 788
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 922
Bse1I ACTGG 2 cut(s) 219, 331
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 4 cut(s) 214, 422, 789, 845
BseDI CCNNGG 3 cut(s) 420, 670, 788
BseGI GGATG 3 cut(s) 510, 798, 853
BseLI CCNNNNNNNGG 2 cut(s) 426, 922
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 4 cut(s) 267, 587, 760, 1005
BseNI ACTGG 2 cut(s) 219, 331
BseRI GAGGAG 2 cut(s) 59, 588
BseX3I CGGCCG 1 cut(s) 6
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 2 cut(s) 51, 406
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 684
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 228, 297
BslI CCNNNNNNNGG 2 cut(s) 426, 922
BsnI GGCC 2 cut(s) 8, 684
Bsp1286I GDGCHC 2 cut(s) 228, 297
Bsp143I GATC 4 cut(s) 355, 742, 893, 949
Bsp1720I GCTNAGC 1 cut(s) 1014
Bsp68I TCGCGA 1 cut(s) 406
BspACI CCGC 3 cut(s) 5, 51, 1007
BspANI GGCC 2 cut(s) 8, 684
BspCNI CTCAG 4 cut(s) 268, 586, 759, 1006
BspFNI CGCG 2 cut(s) 51, 406
BspLI GGNNCC 4 cut(s) 60, 764, 895, 1005
BspMAI CTGCAG 1 cut(s) 946
BspMI ACCTGC 2 cut(s) 667, 685
BspPI GGATC 2 cut(s) 888, 901
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 2 cut(s) 219, 331
BssECI CCNNGG 3 cut(s) 420, 670, 788
BssMI GATC 4 cut(s) 355, 742, 893, 949
Bst2UI CCWGG 4 cut(s) 214, 422, 789, 845
Bst4CI ACNGT 7 cut(s) 86, 340, 481, 525, 613, 772, 962
Bst6I CTCTTC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 292
BstC8I GCNNGC 6 cut(s) 30, 288, 332, 682, 1011, 1020
BstDEI CTNAG 4 cut(s) 276, 573, 746, 1014
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 3 cut(s) 510, 798, 853
BstFNI CGCG 2 cut(s) 51, 406
BstHHI GCGC 2 cut(s) 51, 669
BstKTI GATC 4 cut(s) 358, 745, 896, 952
BstMBI GATC 4 cut(s) 355, 742, 893, 949
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 292, 1006, 1015, 1019
BstNI CCWGG 4 cut(s) 214, 422, 789, 845
BstNSI RCATGY 3 cut(s) 140, 334, 708
BstSCI CCNGG 4 cut(s) 212, 420, 787, 843
BstSFI CTRYAG 1 cut(s) 942
BstUI CGCG 2 cut(s) 51, 406
BstV2I GAAGAC 3 cut(s) 81, 250, 342
BstX2I RGATCY 3 cut(s) 742, 893, 949
BstYI RGATCY 3 cut(s) 742, 893, 949
BstZI CGGCCG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 1027
BsuRI GGCC 2 cut(s) 8, 684
BtgI CCRYGG 1 cut(s) 670
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 3 cut(s) 510, 798, 853
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 226, 297, 477
BtuMI TCGCGA 1 cut(s) 406
BveI ACCTGC 2 cut(s) 667, 685
Cac8I GCNNGC 6 cut(s) 30, 288, 332, 682, 1011, 1020
CaiI CAGNNNCTG 2 cut(s) 25, 611
CfoI GCGC 2 cut(s) 51, 669
Cfr13I GGNCC 4 cut(s) 59, 216, 674, 683
Csp6I GTAC 3 cut(s) 320, 475, 858
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CviAII CATG 5 cut(s) 124, 137, 331, 705, 854
CviQI GTAC 3 cut(s) 320, 475, 858
DdeI CTNAG 4 cut(s) 276, 573, 746, 1014
DpnI GATC 4 cut(s) 357, 744, 895, 951
DpnII GATC 4 cut(s) 355, 742, 893, 949
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 226
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 3 cut(s) 59, 216, 674
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 226
EcoRII CCWGG 4 cut(s) 212, 420, 787, 843
EcoT22I ATGCAT 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 5 cut(s) 127, 140, 334, 708, 857
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FatI CATG 5 cut(s) 123, 136, 330, 704, 853
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 2 cut(s) 6, 1007
FokI GGATG 3 cut(s) 517, 805, 860
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 6, 1007
FspBI CTAG 1 cut(s) 558
GlaI GCGC 2 cut(s) 50, 668
GluI GCNGC 2 cut(s) 6, 1007
GsuI CTGGAG 1 cut(s) 969
HaeIII GGCC 2 cut(s) 8, 684
HhaI GCGC 2 cut(s) 51, 669
Hin1II CATG 5 cut(s) 127, 140, 334, 708, 857
Hin6I GCGC 2 cut(s) 49, 667
HinP1I GCGC 2 cut(s) 49, 667
HincII GTYRAC 3 cut(s) 629, 775, 913
HindII GTYRAC 3 cut(s) 629, 775, 913
HinfI GANTC 3 cut(s) 566, 571, 929
HphI GGTGA 3 cut(s) 98, 116, 389
Hpy166II GTNNAC 6 cut(s) 142, 477, 629, 674, 775, 913
Hpy188I TCNGA 4 cut(s) 355, 360, 576, 1033
Hpy188III TCNNGA 4 cut(s) 405, 434, 587, 837
Hpy8I GTNNAC 6 cut(s) 142, 477, 629, 674, 775, 913
HpyAV CCTTC 8 cut(s) 236, 274, 439, 593, 753, 818, 884, 1038
HpyCH4III ACNGT 7 cut(s) 86, 340, 481, 525, 613, 772, 962
HpyCH4IV ACGT 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 4 cut(s) 292, 1006, 1015, 1019
HpyF3I CTNAG 4 cut(s) 276, 573, 746, 1014
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 5 cut(s) 127, 140, 334, 708, 857
HspAI GCGC 2 cut(s) 49, 667
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 355, 742, 893, 949
LmnI GCTCC 2 cut(s) 46, 1003
LweI GCATC 3 cut(s) 495, 539, 892
MaeI CTAG 1 cut(s) 558
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 2 cut(s) 268, 377
MalI GATC 4 cut(s) 357, 744, 895, 951
MboI GATC 4 cut(s) 355, 742, 893, 949
MboII GAAGA 8 cut(s) 86, 107, 140, 250, 342, 420, 938, 959
MflI RGATCY 3 cut(s) 742, 893, 949
MhlI GDGCHC 2 cut(s) 228, 297
MluCI AATT 4 cut(s) 468, 816, 831, 1057
MlyI GAGTC 1 cut(s) 565
Mph1103I ATGCAT 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 415
MseI TTAA 2 cut(s) 536, 815
MspA1I CMGCKG 1 cut(s) 1009
MspR9I CCNGG 4 cut(s) 214, 422, 789, 845
MvaI CCWGG 4 cut(s) 214, 422, 789, 845
MvnI CGCG 2 cut(s) 51, 406
MwoI GCNNNNNNNGC 4 cut(s) 292, 1006, 1015, 1019
NdeII GATC 4 cut(s) 355, 742, 893, 949
NlaIII CATG 5 cut(s) 127, 140, 334, 708, 857
NlaIV GGNNCC 4 cut(s) 60, 764, 895, 1005
NmuCI GTSAC 1 cut(s) 377
NruI TCGCGA 1 cut(s) 406
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 3 cut(s) 140, 334, 708
PaeI GCATGC 1 cut(s) 334
PaqCI CACCTGC 1 cut(s) 667
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 566, 929
PfoI TCCNGGA 1 cut(s) 212
PkrI GCNGC 2 cut(s) 7, 1008
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 4 cut(s) 212, 420, 787, 843
PspGI CCWGG 4 cut(s) 212, 420, 787, 843
PspN4I GGNNCC 4 cut(s) 60, 764, 895, 1005
PspPI GGNCC 4 cut(s) 59, 216, 674, 683
PstI CTGCAG 1 cut(s) 946
PstNI CAGNNNCTG 2 cut(s) 25, 611
PsuI RGATCY 3 cut(s) 742, 893, 949
RruI TCGCGA 1 cut(s) 406
RsaI GTAC 3 cut(s) 321, 476, 859
RsaNI GTAC 3 cut(s) 320, 475, 858
SacI GAGCTC 1 cut(s) 228
SalI GTCGAC 1 cut(s) 773
SaqAI TTAA 2 cut(s) 536, 815
SatI GCNGC 2 cut(s) 6, 1007
Sau3AI GATC 4 cut(s) 355, 742, 893, 949
Sau96I GGNCC 4 cut(s) 59, 216, 674, 683
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 4 cut(s) 214, 422, 789, 845
SduI GDGCHC 2 cut(s) 228, 297
SfaNI GCATC 3 cut(s) 495, 539, 892
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 3 cut(s) 59, 216, 674
SphI GCATGC 1 cut(s) 334
Sse9I AATT 4 cut(s) 468, 816, 831, 1057
SsiI CCGC 3 cut(s) 5, 51, 1007
SspMI CTAG 1 cut(s) 558
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 212, 420, 787, 843
TaaI ACNGT 7 cut(s) 86, 340, 481, 525, 613, 772, 962
TaiI ACGT 1 cut(s) 316
TaqI TCGA 5 cut(s) 34, 42, 569, 774, 797
TasI AATT 4 cut(s) 468, 816, 831, 1057
TauI GCSGC 2 cut(s) 8, 1009
TfiI GAWTC 2 cut(s) 566, 929
Tru1I TTAA 2 cut(s) 536, 815
Tru9I TTAA 2 cut(s) 536, 815
TscAI CASTG 3 cut(s) 226, 297, 484
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 1 cut(s) 903
TspGWI ACGGA 3 cut(s) 136, 457, 634
TspRI CASTG 3 cut(s) 226, 297, 484
VpaK11BI GGWCC 3 cut(s) 59, 216, 674
XapI RAATTY 1 cut(s) 831
XceI RCATGY 3 cut(s) 140, 334, 708
XcmI CCANNNNNNNNNTGG 2 cut(s) 785, 851
XmiI GTMKAC 1 cut(s) 774
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 1 cut(s) 558
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.