RLG00000013779

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
40994960 .. 41002055
7096 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013779

Sequence Viewer

Length: 990 bp
ATGGAGGCAGTGAATGCTCAACCAGTACAAGCGAGGCCTTACGAGGGAGAAGAGTCGGAAGGCGACTATGTAGCTATGAATAATGGAGCCGGAGCGAATCCTTCTCAAGTCACAATGAGTCGCTGCAGCAATTCCACTCGCACCAGTGAGCTCACCATCGCCTTCGAGGGCGAGGTCTACGTTTTTCCCGCCGTTACTCCCGATAAGGTTCAAGCAGTACTGTTGCTATTGGGAGGACGTGATATACCAGGCAGTAATATACCAAACAGCGTTCCTAGCTCGGGGTTTTCGCTACAACAGAATAGCAGGGGTATAGGGGACATCTCACGAAATTCAAAACTTTCACGAAGATTTGCATCTCTTGTTAGGTTCCGTGAAAAACGGAAAGAGAGATGCTTTGACAAGAAAATTCGGTACAGTTGTCGTAAAGACATTGCAGAGAGAATGCATCGGAAGAATGGACAGTTTGCATCTTTGAAGGATCCTTCCAAATTGGTTGCGGGGAATTGTGATTCGAGTGATAGCACTTCTTGTCCAGAATCTGTCTTACGTAGATGTCAGCACTGTGGGATTAGTGAAAAGTCTACCCCGGCAATGCGGCGGGGACCAAATGGCCCAAGATCTCTCTGTAATGCTTGTGGTCTTAGGTGGGCAAATAAGGGAACTTTGAGAGATCTTACAAAATCAGGGAGGGATGTTTCTTTTGACCAAAATGAGCTGGAAAGCCCAGAGGAGAATAAGCCTATTGCATTGGATGCTGAAGTCCCTCCTCTGAGACTGAGCGACCAGGACATGCTTGAAACTGCTGAAGCTGCTACTAATCACGTATCCATCCAAATGGAGAATTCATCAGTCAACCTTGATGAGCAGGAGACTCTGGAAGAATTAGCCAATGCTTCAGGGACAGAATTTGAGATTCCTGCAAACTTCGAAGAGCAGGTGGTTGATTTTTACGATTGCAACATGGAGACTCACTGGGGAGGAACTTGA

Protein Analysis

330

Amino Acids

36.28

Weight (kDa)

5.21

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 48 - 78 6.5e-10 tify domain
CCT PF06203 117 - 158 2.3e-14 CCT motif
Jas_motif PF09425 117 - 140 2.5e-06 Jas motif
GATA PF00320 186 - 222 1.6e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 928
Acc36I ACCTGC 1 cut(s) 928
AccI GTMKAC 2 cut(s) 177, 584
AciI CCGC 4 cut(s) 189, 500, 598, 601
AclWI GGATC 2 cut(s) 476, 489
AcsI RAATTY 4 cut(s) 331, 408, 844, 908
AcuI CTGAAG 3 cut(s) 780, 828, 882
AfaI GTAC 3 cut(s) 27, 219, 416
AfiI CCNNNNNNNGG 2 cut(s) 44, 281
AgsI TTSAA 4 cut(s) 212, 336, 478, 800
AjiI CACGTC 1 cut(s) 239
AjnI CCWGG 2 cut(s) 247, 786
AluBI AGCT 5 cut(s) 74, 151, 279, 718, 812
AluI AGCT 5 cut(s) 74, 151, 279, 718, 812
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 3 cut(s) 769, 866, 962
AlwI GGATC 2 cut(s) 476, 489
AlwNI CAGNNNCTG 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 2 cut(s) 35, 613
ApeKI GCWGC 3 cut(s) 123, 126, 812
ApoI RAATTY 4 cut(s) 331, 408, 844, 908
AspS9I GGNCC 2 cut(s) 605, 614
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 930
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 605
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BamHI GGATCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 110, 138, 799
BccI CCATC 2 cut(s) 164, 839
BceAI ACGGC 1 cut(s) 176
BciT130I CCWGG 2 cut(s) 249, 788
BciVI GTATCC 1 cut(s) 838
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 3 cut(s) 769, 866, 962
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 928
BfuI GTATCC 1 cut(s) 838
BglII AGATCT 2 cut(s) 620, 673
BisI GCNGC 4 cut(s) 124, 127, 599, 813
BlsI GCNGC 4 cut(s) 125, 128, 600, 814
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 3 cut(s) 249, 590, 788
Bme18I GGWCC 1 cut(s) 605
BmeT110I CYCGRG 1 cut(s) 280
BmgBI CACGTC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 605, 614
BmiI GGNNCC 4 cut(s) 88, 371, 483, 606
BmrFI CCNGG 3 cut(s) 249, 590, 788
BmrI ACTGGG 1 cut(s) 985
BmsI GCATC 5 cut(s) 365, 383, 457, 479, 745
BmuI ACTGGG 1 cut(s) 985
Bpu14I TTCGAA 1 cut(s) 930
BpuEI CTTGAG 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 590
BsaAI YACGTR 2 cut(s) 551, 826
BsaBI GATNNNNATC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 588
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 281
Bse1I ACTGG 3 cut(s) 23, 144, 980
Bse3DI GCAATG 2 cut(s) 432, 600
Bse8I GATNNNNATC 1 cut(s) 355
BseBI CCWGG 2 cut(s) 249, 788
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 3 cut(s) 700, 760, 831
BseJI GATNNNNATC 1 cut(s) 355
BseLI CCNNNNNNNGG 2 cut(s) 44, 281
BseMI GCAATG 2 cut(s) 432, 600
BseMII CTCAG 2 cut(s) 764, 770
BseNI ACTGG 3 cut(s) 23, 144, 980
BseRI GAGGAG 2 cut(s) 746, 759
BseXI GCAGC 3 cut(s) 110, 138, 799
BshFI GGCC 2 cut(s) 37, 615
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 2 cut(s) 90, 590
BslFI GGGAC 4 cut(s) 332, 618, 749, 916
BslI CCNNNNNNNGG 2 cut(s) 44, 281
BsmAI GTCTC 3 cut(s) 769, 866, 962
BsmFI GGGAC 4 cut(s) 332, 618, 749, 916
BsmI GAATGC 2 cut(s) 19, 450
BsnI GGCC 2 cut(s) 37, 615
BsoBI CYCGRG 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 930
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 481, 620, 673
BspACI CCGC 4 cut(s) 189, 500, 598, 601
BspANI GGCC 2 cut(s) 37, 615
BspCNI CTCAG 2 cut(s) 765, 771
BspLI GGNNCC 4 cut(s) 88, 371, 483, 606
BspMAI CTGCAG 1 cut(s) 128
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 2 cut(s) 476, 489
BspQI GCTCTTC 1 cut(s) 927
BspT104I TTCGAA 1 cut(s) 930
BsrDI GCAATG 2 cut(s) 432, 600
BsrI ACTGG 3 cut(s) 23, 144, 980
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 3 cut(s) 481, 620, 673
Bst2UI CCWGG 2 cut(s) 249, 788
Bst4CI ACNGT 4 cut(s) 222, 419, 465, 566
Bst6I CTCTTC 2 cut(s) 45, 927
BstAPI GCANNNNNTGC 2 cut(s) 14, 755
BstBAI YACGTR 2 cut(s) 551, 826
BstBI TTCGAA 1 cut(s) 930
BstDEI CTNAG 3 cut(s) 644, 773, 779
BstF5I GGATG 3 cut(s) 700, 760, 831
BstKTI GATC 3 cut(s) 484, 623, 676
BstMAI GTCTC 3 cut(s) 769, 866, 962
BstMBI GATC 3 cut(s) 481, 620, 673
BstMWI GCNNNNNNNGC 4 cut(s) 14, 276, 755, 812
BstNI CCWGG 2 cut(s) 249, 788
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 3 cut(s) 247, 588, 786
BstSFI CTRYAG 1 cut(s) 124
BstSNI TACGTA 1 cut(s) 551
BstV1I GCAGC 3 cut(s) 110, 138, 799
BstX2I RGATCY 3 cut(s) 481, 620, 673
BstXI CCANNNNNNTGG 1 cut(s) 838
BstYI RGATCY 3 cut(s) 481, 620, 673
BsuI GTATCC 1 cut(s) 838
BsuRI GGCC 2 cut(s) 37, 615
BtgZI GCGATG 1 cut(s) 142
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 3 cut(s) 700, 760, 831
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 4 cut(s) 15, 151, 562, 973
BveI ACCTGC 1 cut(s) 928
CaiI CAGNNNCTG 1 cut(s) 542
Cfr13I GGNCC 2 cut(s) 605, 614
Csp6I GTAC 3 cut(s) 26, 218, 415
CviAII CATG 2 cut(s) 793, 964
CviQI GTAC 3 cut(s) 26, 218, 415
DdeI CTNAG 3 cut(s) 644, 773, 779
DpnI GATC 3 cut(s) 483, 622, 675
DpnII GATC 3 cut(s) 481, 620, 673
Eam1104I CTCTTC 2 cut(s) 45, 927
EarI CTCTTC 2 cut(s) 45, 927
Ecl136II GAGCTC 1 cut(s) 151
Eco105I TACGTA 1 cut(s) 551
Eco147I AGGCCT 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 780, 828, 882
Eco88I CYCGRG 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 2 cut(s) 247, 786
EcoT22I ATGCAT 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 2 cut(s) 796, 967
FaiI YATR 7 cut(s) 69, 77, 245, 260, 314, 794, 965
FaqI GGGAC 4 cut(s) 332, 618, 749, 916
FatI CATG 2 cut(s) 792, 963
FauI CCCGC 3 cut(s) 196, 493, 594
FblI GTMKAC 2 cut(s) 177, 584
Fnu4HI GCNGC 4 cut(s) 124, 127, 599, 813
FokI GGATG 3 cut(s) 707, 767, 818
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 124, 127, 599, 813
FspBI CTAG 1 cut(s) 276
GluI GCNGC 4 cut(s) 124, 127, 599, 813
HaeIII GGCC 2 cut(s) 37, 615
HapII CCGG 2 cut(s) 90, 590
Hin1II CATG 2 cut(s) 796, 967
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 8 cut(s) 53, 97, 118, 512, 539, 874, 916, 970
HpaII CCGG 2 cut(s) 90, 590
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 178, 585, 856
Hpy188I TCNGA 3 cut(s) 58, 453, 774
Hpy188III TCNNGA 5 cut(s) 200, 327, 345, 536, 878
Hpy8I GTNNAC 3 cut(s) 178, 585, 856
HpyAV CCTTC 5 cut(s) 53, 111, 172, 472, 495
HpyCH4III ACNGT 4 cut(s) 222, 419, 465, 566
HpyCH4IV ACGT 4 cut(s) 180, 238, 550, 825
HpyCH4V TGCA 8 cut(s) 126, 356, 437, 448, 470, 749, 923, 960
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 276, 755, 812
HpyF3I CTNAG 3 cut(s) 644, 773, 779
HpySE526I ACGT 4 cut(s) 180, 238, 550, 825
Hsp92II CATG 2 cut(s) 796, 967
Kzo9I GATC 3 cut(s) 481, 620, 673
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 2 cut(s) 86, 92
Lsp1109I GCAGC 3 cut(s) 110, 138, 799
LweI GCATC 5 cut(s) 365, 383, 457, 479, 745
MaeI CTAG 1 cut(s) 276
MaeII ACGT 4 cut(s) 180, 238, 550, 825
MaeIII GTNAC 2 cut(s) 109, 193
MalI GATC 3 cut(s) 483, 622, 675
MboI GATC 3 cut(s) 481, 620, 673
MboII GAAGA 5 cut(s) 62, 360, 466, 893, 944
MflI RGATCY 3 cut(s) 481, 620, 673
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 8 cut(s) 130, 331, 408, 491, 505, 844, 884, 908
MlyI GAGTC 4 cut(s) 62, 127, 868, 964
MmeI TCCRAC 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 450
MslI CAYNNNNRTG 1 cut(s) 836
MspI CCGG 2 cut(s) 90, 590
MspR9I CCNGG 3 cut(s) 249, 590, 788
Mva1269I GAATGC 2 cut(s) 19, 450
MvaI CCWGG 2 cut(s) 249, 788
MwoI GCNNNNNNNGC 4 cut(s) 14, 276, 755, 812
NciI CCSGG 1 cut(s) 590
NdeII GATC 3 cut(s) 481, 620, 673
NlaIII CATG 2 cut(s) 796, 967
NlaIV GGNNCC 4 cut(s) 88, 371, 483, 606
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 930
PaqCI CACCTGC 1 cut(s) 928
PceI AGGCCT 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 927
PctI GAATGC 2 cut(s) 19, 450
PfeI GAWTC 4 cut(s) 97, 512, 539, 916
PkrI GCNGC 4 cut(s) 125, 128, 600, 814
PleI GAGTC 4 cut(s) 61, 126, 868, 964
PpsI GAGTC 4 cut(s) 61, 126, 868, 964
Ppu21I YACGTR 2 cut(s) 551, 826
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 247, 786
PspGI CCWGG 2 cut(s) 247, 786
PspN4I GGNNCC 4 cut(s) 88, 371, 483, 606
PspPI GGNCC 2 cut(s) 605, 614
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 3 cut(s) 481, 620, 673
RsaI GTAC 3 cut(s) 27, 219, 416
RsaNI GTAC 3 cut(s) 26, 218, 415
RseI CAYNNNNRTG 1 cut(s) 836
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 927
SatI GCNGC 4 cut(s) 124, 127, 599, 813
Sau3AI GATC 3 cut(s) 481, 620, 673
Sau96I GGNCC 2 cut(s) 605, 614
ScaI AGTACT 1 cut(s) 219
SchI GAGTC 4 cut(s) 62, 127, 868, 964
ScrFI CCNGG 3 cut(s) 249, 590, 788
SduI GDGCHC 1 cut(s) 153
SfaNI GCATC 5 cut(s) 365, 383, 457, 479, 745
SfcI CTRYAG 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 930
SinI GGWCC 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 836
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
SnaBI TACGTA 1 cut(s) 551
Sse9I AATT 8 cut(s) 130, 331, 408, 491, 505, 844, 884, 908
SseBI AGGCCT 1 cut(s) 37
SsiI CCGC 4 cut(s) 189, 500, 598, 601
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 37
StyD4I CCNGG 3 cut(s) 247, 588, 786
TaaI ACNGT 4 cut(s) 222, 419, 465, 566
TaiI ACGT 4 cut(s) 183, 241, 553, 828
TaqI TCGA 3 cut(s) 165, 515, 930
TasI AATT 8 cut(s) 130, 331, 408, 491, 505, 844, 884, 908
TatI WGTACW 2 cut(s) 25, 217
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 4 cut(s) 97, 512, 539, 916
TscAI CASTG 4 cut(s) 15, 151, 569, 980
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 123, 126, 812
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 92, 837
TspGWI ACGGA 2 cut(s) 362, 397
TspRI CASTG 4 cut(s) 15, 151, 569, 980
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 4 cut(s) 331, 408, 844, 908
XceI RCATGY 1 cut(s) 796
XmiI GTMKAC 2 cut(s) 177, 584
XspI CTAG 1 cut(s) 276
ZrmI AGTACT 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.