Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

17624424 .. 17627220

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCAGCCGTCAATCCACAGCCTCTGGAAGCTGGACCATTTGAGGAGCACGGGAGCGGTCCAATACAGGTAGAAGACGATGACGGTGACTACGAAGATGGTGGTGATGATGGTATGGAGGACATGGAAGAGGTGCATGTGAACCCCGTCAGCGTTGCGGAGCGTGGAGGAGGAGGAGGAGGAGGAGGTGTGGTCATGGCGTCCAGGACTAGCGAGCTCACTCTGTCCTTTGAAGGCGAGGTCTATGTCTTCCCTGCTGTTACACCCGAGAAGGTGCAAGCAGTGCTCTTGCTGTTGGGAGGACGTGATGTACCAACTGGTGTGCCCACAGTGGAAGTGTCTTACAATCAGAATCCAAGGGGTGTGGGTGACACCCCAAAGCGTTCAAATCTTTCGCGAAGAATAGCTTCCCTGGTAAGGTTTCGTGAAAAGCGGAAGGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTGCGTAAAGAGGTTGCACAGAGACGTGTCATTCTTTCTGTTATTCTTATTGTTTTGCTAGGATGCTTCGGAAGAATGGACAGTTTGCATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

189

Amino Acids

20.49

Weight (kDa)

5.33

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	57
AccII	CGCG	1 cut(s)	397
AciI	CCGC	3 cut(s)	57, 158, 433
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	2 cut(s)	312, 467
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	233, 387
AjiI	CACGTC	2 cut(s)	305, 497
AjnI	CCWGG	2 cut(s)	203, 411
AluBI	AGCT	3 cut(s)	32, 217, 407
AluI	AGCT	3 cut(s)	32, 217, 407
Alw21I	GWGCWC	3 cut(s)	51, 219, 288
Alw26I	GTCTC	1 cut(s)	487
AlwNI	CAGNNNCTG	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	35, 59
AsuHPI	GGTGA	3 cut(s)	98, 116, 380
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	35, 59
BaeGI	GKGCMC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	2 cut(s)	81, 241
Bbv12I	GWGCWC	3 cut(s)	51, 219, 288
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	92, 104
BciT130I	CCWGG	2 cut(s)	205, 413
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	210, 530
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	205, 413
Bme18I	GGWCC	2 cut(s)	35, 59
BmeT110I	CYCGRG	1 cut(s)	266
BmgBI	CACGTC	2 cut(s)	305, 497
BmgT120I	GGNCC	2 cut(s)	35, 59
BmrFI	CCNGG	2 cut(s)	205, 413
BmsI	GCATC	1 cut(s)	524
BpiI	GAAGAC	2 cut(s)	81, 241
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	356, 411
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 177, 204, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	205, 413
BseDI	CCNNGG	2 cut(s)	356, 411
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	7 cut(s)	59, 183, 186, 189, 192, 195, 198
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	397
BsiHKAI	GWGCWC	3 cut(s)	51, 219, 288
BsiHKCI	CYCGRG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	1 cut(s)	487
BsmBI	CGTCTC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	4 cut(s)	51, 219, 288, 327
Bsp68I	TCGCGA	1 cut(s)	397
BspACI	CCGC	3 cut(s)	57, 158, 433
BspFNI	CGCG	1 cut(s)	397
BsrBI	CCGCTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	356, 411
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	205, 413
Bst4CI	ACNGT	4 cut(s)	86, 331, 472, 554
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	215, 279
BstF5I	GGATG	1 cut(s)	539
BstFNI	CGCG	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	2 cut(s)	205, 413
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	203, 411
BstSLI	GKGCMC	1 cut(s)	327
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	81, 241
BtrI	CACGTC	2 cut(s)	305, 497
BtsCI	GGATG	1 cut(s)	539
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	288, 336, 468
BtuMI	TCGCGA	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	215, 279
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	35, 59
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	311, 466
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	3 cut(s)	124, 137, 196
CviJI	RGCY	5 cut(s)	8, 22, 32, 217, 407
CviKI_1	RGCY	5 cut(s)	8, 22, 32, 217, 407
CviQI	GTAC	2 cut(s)	311, 466
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	35, 59
Eco53kI	GAGCTC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	203, 411
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	356
Esp3I	CGTCTC	1 cut(s)	487
FaeI	CATG	3 cut(s)	127, 140, 199
FaiI	YATR	5 cut(s)	116, 125, 138, 197, 246
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FatI	CATG	3 cut(s)	123, 136, 195
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	546
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	210, 530
GluI	GCNGC	1 cut(s)	6
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	127, 140, 199
HinfI	GANTC	1 cut(s)	352
HphI	GGTGA	3 cut(s)	98, 116, 380
Hpy166II	GTNNAC	2 cut(s)	142, 468
Hpy188I	TCNGA	2 cut(s)	351, 542
Hpy188III	TCNNGA	3 cut(s)	26, 396, 425
Hpy8I	GTNNAC	2 cut(s)	142, 468
HpyAV	CCTTC	3 cut(s)	227, 265, 430
HpyCH4III	ACNGT	4 cut(s)	86, 331, 472, 554
HpyCH4IV	ACGT	2 cut(s)	304, 496
HpyCH4V	TGCA	4 cut(s)	136, 277, 488, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpySE526I	ACGT	2 cut(s)	304, 496
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	127, 140, 199
LmnI	GCTCC	3 cut(s)	46, 54, 160
LpnPI	CCDG	9 cut(s)	11, 18, 53, 190, 217, 267, 303, 398, 425
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	524
MaeI	CTAG	2 cut(s)	210, 530
MaeII	ACGT	2 cut(s)	304, 496
MaeIII	GTNAC	3 cut(s)	86, 259, 368
MbiI	CCGCTC	1 cut(s)	57
MboII	GAAGA	6 cut(s)	86, 107, 140, 241, 411, 555
MhlI	GDGCHC	4 cut(s)	51, 219, 288, 327
MluCI	AATT	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	1 cut(s)	565
MspR9I	CCNGG	2 cut(s)	205, 413
MvaI	CCWGG	2 cut(s)	205, 413
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	127, 140, 199
NmuCI	GTSAC	2 cut(s)	86, 368
NruI	TCGCGA	1 cut(s)	397
NspI	RCATGY	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	352
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	203, 411
PspGI	CCWGG	2 cut(s)	203, 411
PspPI	GGNCC	2 cut(s)	35, 59
PstNI	CAGNNNCTG	1 cut(s)	25
RruI	TCGCGA	1 cut(s)	397
RsaI	GTAC	2 cut(s)	312, 467
RsaNI	GTAC	2 cut(s)	311, 466
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	565
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	35, 59
ScrFI	CCNGG	2 cut(s)	205, 413
SduI	GDGCHC	4 cut(s)	51, 219, 288, 327
SfaNI	GCATC	1 cut(s)	524
SinI	GGWCC	2 cut(s)	35, 59
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	3 cut(s)	57, 158, 433
SspMI	CTAG	2 cut(s)	210, 530
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	203, 411
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	4 cut(s)	86, 331, 472, 554
TaiI	ACGT	2 cut(s)	307, 499
TasI	AATT	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TscAI	CASTG	3 cut(s)	288, 336, 475
TseFI	GTSAC	2 cut(s)	86, 368
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	86, 368
TspRI	CASTG	3 cut(s)	288, 336, 475
VpaK11BI	GGWCC	2 cut(s)	35, 59
XceI	RCATGY	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	2 cut(s)	210, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.