RLG00000001180

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
11468367 .. 11472376
4010 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001180

Sequence Viewer

Length: 1071 bp
ATGGCGGCCGTGAATCCACAGCCTCTGCAAGCGCGTCGTCCGTACGAGGACCACGTGGCGGCTGGTTCGTTTCGGATGGAGGACGATGAGGGCGGCGAGTACGAAGACGGTGGTGGCGACGAGGCTAATATGGAGGAGGAGGAAGAGGAGGTTCACGCGAGCTTGGCGGCGGTGGCGGCGCGTGGGGGAGTGAGTGTGCTTACGGCGGCGACGAGGACTAGTGAGCTCACTCTCTCTTTTGAAGGCGAGGTTTATGTGTTTCCTGCTGTTACGCCCCAGAAGGTACAAGCAGTGCTATTGCTGTTGGGAGGACGTGATGCACCAACTGGCGTTCCTACGGTTGAAATGTCTTACGATCAGAATACAAGGGGTGTGGGTGACACCCCAAAGCGTTCGAATCTTTCCCGAAGAATAGCTTCCCTTGTTAGATTTCGTGAGAAACGGAAGGAGAGGTGTTTTGACAAGAAAATTAGGTACACTGTGCGTAAAGAGGTTGCACAGAGAATGCATCGTAAGAATGGACAGTTCGCATCGTTAAAAGAAAATTCTAGCGGTTCTGGTTGGGACTCGGCACAAAGTTCCCTTCAAGATGGCACTCCTCGACCTGAAACTGTCTTACGAAGATGTCAACACTGTGGAGTTAGTGAAAATAATACTCCTGCTATGCGCCGTGGGCCTGCTGGTCCAAGAACTTTATGTAATGCTTGTGGTCTTATGTGGGCGAATAAGGGAACATTGAGAGATCTCAGCAAGGGAGGAAGGAACCTTTCCATGGACCACATCGAACCTGGAACACCACTTGAAATCAAGCCTTCAATAGTTGAATGTGAATTCTCTGGCAACCAGGATGGGCATGGAGCTCGTGAGGATCCTTCTAAATTAGTCATTGAAGGTTCCAATGATGCTTCTGTCAACCTGGATGTGGAAAATTTTCAAGAATCTGCCGAGGATCTTACAAACACTTTGCCTATGGGAATTGTTTCCCCAACCAATGATGATGAGCAGGAGCCTCTGCTTGAGCTCACTAATACTTCAGATACAGATTTAGACATCCCTACTAATTTTGATTAG

Protein Analysis

357

Amino Acids

38.88

Weight (kDa)

4.89

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 73 - 103 1.8e-09 tify domain
CCT PF06203 137 - 178 7.4e-14 CCT motif
Jas_motif PF09425 137 - 159 7e-07 Jas motif
GATA PF00320 209 - 245 2.3e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 34, 158, 181
AciI CCGC 8 cut(s) 5, 59, 93, 167, 170, 176, 206, 552
AclWI GGATC 3 cut(s) 863, 876, 957
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 544, 830, 928
AcuI CTGAAG 1 cut(s) 1017
AcvI CACGTG 1 cut(s) 55
AfaI GTAC 4 cut(s) 44, 101, 285, 476
AfiI CCNNNNNNNGG 3 cut(s) 58, 772, 922
AgsI TTSAA 8 cut(s) 242, 344, 587, 803, 816, 824, 890, 935
AhlI ACTAGT 1 cut(s) 218
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 3 cut(s) 787, 843, 915
AluBI AGCT 5 cut(s) 162, 226, 416, 860, 1021
AluI AGCT 5 cut(s) 162, 226, 416, 860, 1021
Alw21I GWGCWC 3 cut(s) 228, 862, 1023
AlwI GGATC 3 cut(s) 863, 876, 957
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 2 cut(s) 6, 674
ApoI RAATTY 3 cut(s) 544, 830, 928
Asp700I GAANNNNTTC 3 cut(s) 415, 930, 979
AspLEI GCGC 3 cut(s) 34, 181, 669
AspS9I GGNCC 4 cut(s) 49, 674, 683, 775
AsuHPI GGTGA 1 cut(s) 389
AsuII TTCGAA 1 cut(s) 395
AvaII GGWCC 3 cut(s) 49, 683, 775
BamHI GGATCC 1 cut(s) 868
BanII GRGCYC 3 cut(s) 228, 862, 1023
BauI CACGAG 1 cut(s) 861
BbrPI CACGTG 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 3 cut(s) 228, 862, 1023
BccI CCATC 3 cut(s) 70, 584, 842
BceAI ACGGC 2 cut(s) 219, 654
BcgI CGANNNNNNTGC 4 cut(s) 17, 51, 842, 876
BciT130I CCWGG 3 cut(s) 789, 845, 917
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 2 cut(s) 219, 549
BglII AGATCT 1 cut(s) 742
BisI GCNGC 6 cut(s) 6, 60, 94, 168, 177, 207
BlsI GCNGC 6 cut(s) 7, 61, 95, 169, 178, 208
Bme1390I CCNGG 3 cut(s) 789, 845, 917
Bme18I GGWCC 3 cut(s) 49, 683, 775
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 4 cut(s) 49, 674, 683, 775
BmiI GGNNCC 4 cut(s) 764, 870, 895, 1008
BmrFI CCNGG 3 cut(s) 789, 845, 917
BmsI GCATC 4 cut(s) 307, 517, 539, 892
BpiI GAAGAC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 670, 771, 945
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 772, 922
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 3 cut(s) 789, 845, 917
BseDI CCNNGG 3 cut(s) 670, 771, 945
BseGI GGATG 4 cut(s) 81, 853, 925, 1050
BseLI CCNNNNNNNGG 3 cut(s) 58, 772, 922
BseMII CTCAG 1 cut(s) 760
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 4 cut(s) 149, 152, 161, 588
BseX3I CGGCCG 1 cut(s) 6
Bsh1236I CGCG 3 cut(s) 34, 158, 181
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 676
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 3 cut(s) 228, 862, 1023
BsiWI CGTACG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 3 cut(s) 58, 772, 922
BsmFI GGGAC 1 cut(s) 578
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 2 cut(s) 8, 676
Bsp119I TTCGAA 1 cut(s) 395
Bsp1286I GDGCHC 3 cut(s) 228, 862, 1023
Bsp143I GATC 4 cut(s) 355, 742, 868, 949
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 8 cut(s) 5, 59, 93, 167, 170, 176, 206, 552
BspANI GGCC 2 cut(s) 8, 676
BspCNI CTCAG 1 cut(s) 759
BspFNI CGCG 3 cut(s) 34, 158, 181
BspLI GGNNCC 4 cut(s) 764, 870, 895, 1008
BspPI GGATC 3 cut(s) 863, 876, 957
BspT104I TTCGAA 1 cut(s) 395
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 3 cut(s) 670, 771, 945
BssMI GATC 4 cut(s) 355, 742, 868, 949
BssSI CACGAG 1 cut(s) 861
BssT1I CCWWGG 1 cut(s) 771
Bst2BI CACGAG 1 cut(s) 861
Bst2UI CCWGG 3 cut(s) 789, 845, 917
Bst4CI ACNGT 6 cut(s) 110, 340, 481, 525, 613, 635
Bst6I CTCTTC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 55
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 3 cut(s) 30, 160, 678
BstDEI CTNAG 1 cut(s) 746
BstDSI CCRYGG 2 cut(s) 670, 771
BstF5I GGATG 4 cut(s) 81, 853, 925, 1050
BstFNI CGCG 3 cut(s) 34, 158, 181
BstHHI GCGC 3 cut(s) 34, 181, 669
BstKTI GATC 4 cut(s) 358, 745, 871, 952
BstMBI GATC 4 cut(s) 355, 742, 868, 949
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 164, 173, 176, 673
BstNI CCWGG 3 cut(s) 789, 845, 917
BstSCI CCNGG 3 cut(s) 787, 843, 915
BstUI CGCG 3 cut(s) 34, 158, 181
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 3 cut(s) 742, 868, 949
BstYI RGATCY 3 cut(s) 742, 868, 949
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 676
BtgI CCRYGG 2 cut(s) 670, 771
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 4 cut(s) 81, 853, 925, 1050
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 297, 477, 631
Cac8I GCNNGC 3 cut(s) 30, 160, 678
CaiI CAGNNNCTG 1 cut(s) 25
CfoI GCGC 3 cut(s) 34, 181, 669
Cfr13I GGNCC 4 cut(s) 49, 674, 683, 775
CseI GACGC 1 cut(s) 23
Csp6I GTAC 4 cut(s) 43, 100, 284, 475
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CviAII CATG 2 cut(s) 772, 854
CviQI GTAC 4 cut(s) 43, 100, 284, 475
DdeI CTNAG 1 cut(s) 746
DpnI GATC 4 cut(s) 357, 744, 870, 951
DpnII GATC 4 cut(s) 355, 742, 868, 949
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Ecl136II GAGCTC 3 cut(s) 226, 860, 1021
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 771
Eco24I GRGCYC 3 cut(s) 228, 862, 1023
Eco47I GGWCC 3 cut(s) 49, 683, 775
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 3 cut(s) 226, 860, 1021
Eco57I CTGAAG 1 cut(s) 1017
Eco72I CACGTG 1 cut(s) 55
EcoICRI GAGCTC 3 cut(s) 226, 860, 1021
EcoRI GAATTC 1 cut(s) 830
EcoRII CCWGG 3 cut(s) 787, 843, 915
EcoT14I CCWWGG 1 cut(s) 771
EcoT22I ATGCAT 1 cut(s) 510
EcoT38I GRGCYC 3 cut(s) 228, 862, 1023
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 2 cut(s) 775, 857
FaiI YATR 8 cut(s) 131, 255, 665, 697, 716, 773, 855, 971
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FaqI GGGAC 1 cut(s) 578
FatI CATG 2 cut(s) 771, 853
Fnu4HI GCNGC 6 cut(s) 6, 60, 94, 168, 177, 207
FokI GGATG 4 cut(s) 88, 860, 932, 1037
FriOI GRGCYC 3 cut(s) 228, 862, 1023
Fsp4HI GCNGC 6 cut(s) 6, 60, 94, 168, 177, 207
FspBI CTAG 2 cut(s) 219, 549
GlaI GCGC 3 cut(s) 33, 180, 668
GluI GCNGC 6 cut(s) 6, 60, 94, 168, 177, 207
HaeIII GGCC 2 cut(s) 8, 676
HgaI GACGC 1 cut(s) 23
HhaI GCGC 3 cut(s) 34, 181, 669
Hin1II CATG 2 cut(s) 775, 857
Hin6I GCGC 3 cut(s) 32, 179, 667
HinP1I GCGC 3 cut(s) 32, 179, 667
HincII GTYRAC 2 cut(s) 629, 913
HindII GTYRAC 2 cut(s) 629, 913
HinfI GANTC 4 cut(s) 13, 397, 566, 938
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 4 cut(s) 154, 477, 629, 913
Hpy188I TCNGA 3 cut(s) 75, 360, 1036
Hpy188III TCNNGA 5 cut(s) 405, 434, 587, 863, 935
Hpy8I GTNNAC 4 cut(s) 154, 477, 629, 913
Hpy99I CGWCG 3 cut(s) 39, 122, 214
HpyAV CCTTC 8 cut(s) 236, 274, 439, 593, 753, 822, 882, 884
HpyCH4III ACNGT 6 cut(s) 110, 340, 481, 525, 613, 635
HpyCH4IV ACGT 2 cut(s) 54, 313
HpyCH4V TGCA 4 cut(s) 28, 320, 497, 508
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 173, 176, 673
HpyF3I CTNAG 1 cut(s) 746
HpySE526I ACGT 2 cut(s) 54, 313
Hsp92II CATG 2 cut(s) 775, 857
HspAI GCGC 3 cut(s) 32, 179, 667
Kzo9I GATC 4 cut(s) 355, 742, 868, 949
LmnI GCTCC 2 cut(s) 857, 1006
LweI GCATC 4 cut(s) 307, 517, 539, 892
MaeI CTAG 2 cut(s) 219, 549
MaeII ACGT 2 cut(s) 54, 313
MaeIII GTNAC 2 cut(s) 268, 377
MalI GATC 4 cut(s) 357, 744, 870, 951
MboI GATC 4 cut(s) 355, 742, 868, 949
MboII GAAGA 4 cut(s) 116, 155, 420, 633
MflI RGATCY 3 cut(s) 742, 868, 949
MhlI GDGCHC 3 cut(s) 228, 862, 1023
MluCI AATT 7 cut(s) 468, 544, 830, 878, 928, 975, 1060
MlyI GAGTC 1 cut(s) 560
Mph1103I ATGCAT 1 cut(s) 510
MroXI GAANNNNTTC 3 cut(s) 415, 930, 979
MseI TTAA 1 cut(s) 536
MspR9I CCNGG 3 cut(s) 789, 845, 917
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 3 cut(s) 789, 845, 917
MvnI CGCG 3 cut(s) 34, 158, 181
MwoI GCNNNNNNNGC 4 cut(s) 164, 173, 176, 673
NcoI CCATGG 1 cut(s) 771
NdeII GATC 4 cut(s) 355, 742, 868, 949
NlaIII CATG 2 cut(s) 775, 857
NlaIV GGNNCC 4 cut(s) 764, 870, 895, 1008
NmeAIII GCCGAG 2 cut(s) 548, 970
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 510
NspV TTCGAA 1 cut(s) 395
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 114, 209
PctI GAATGC 1 cut(s) 510
PdmI GAANNNNTTC 3 cut(s) 415, 930, 979
PfeI GAWTC 3 cut(s) 13, 397, 938
Pfl23II CGTACG 1 cut(s) 42
PkrI GCNGC 6 cut(s) 7, 61, 95, 169, 178, 208
PleI GAGTC 1 cut(s) 560
PmaCI CACGTG 1 cut(s) 55
PmlI CACGTG 1 cut(s) 55
PpsI GAGTC 1 cut(s) 560
Ppu21I YACGTR 1 cut(s) 55
Psp124BI GAGCTC 3 cut(s) 228, 862, 1023
Psp6I CCWGG 3 cut(s) 787, 843, 915
PspCI CACGTG 1 cut(s) 55
PspGI CCWGG 3 cut(s) 787, 843, 915
PspLI CGTACG 1 cut(s) 42
PspN4I GGNNCC 4 cut(s) 764, 870, 895, 1008
PspPI GGNCC 4 cut(s) 49, 674, 683, 775
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 3 cut(s) 742, 868, 949
RsaI GTAC 4 cut(s) 44, 101, 285, 476
RsaNI GTAC 4 cut(s) 43, 100, 284, 475
SacI GAGCTC 3 cut(s) 228, 862, 1023
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 6 cut(s) 6, 60, 94, 168, 177, 207
Sau3AI GATC 4 cut(s) 355, 742, 868, 949
Sau96I GGNCC 4 cut(s) 49, 674, 683, 775
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 3 cut(s) 789, 845, 917
SduI GDGCHC 3 cut(s) 228, 862, 1023
SfaNI GCATC 4 cut(s) 307, 517, 539, 892
SfuI TTCGAA 1 cut(s) 395
SinI GGWCC 3 cut(s) 49, 683, 775
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 7 cut(s) 468, 544, 830, 878, 928, 975, 1060
SsiI CCGC 8 cut(s) 5, 59, 93, 167, 170, 176, 206, 552
SspMI CTAG 2 cut(s) 219, 549
SstI GAGCTC 3 cut(s) 228, 862, 1023
StyD4I CCNGG 3 cut(s) 787, 843, 915
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 6 cut(s) 110, 340, 481, 525, 613, 635
TaiI ACGT 2 cut(s) 57, 316
TaqI TCGA 3 cut(s) 395, 601, 783
TasI AATT 7 cut(s) 468, 544, 830, 878, 928, 975, 1060
TauI GCSGC 6 cut(s) 8, 62, 96, 170, 179, 209
TfiI GAWTC 3 cut(s) 13, 397, 938
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 3 cut(s) 297, 484, 638
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspGWI ACGGA 2 cut(s) 30, 457
TspRI CASTG 3 cut(s) 297, 484, 638
VpaK11BI GGWCC 3 cut(s) 49, 683, 775
XapI RAATTY 3 cut(s) 544, 830, 928
XcmI CCANNNNNNNNNTGG 3 cut(s) 59, 785, 851
XmnI GAANNNNTTC 3 cut(s) 415, 930, 979
XspI CTAG 2 cut(s) 219, 549
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.