RchiOBHm_Chr6g0270541

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
28387214 .. 28395084
7871 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24272

Sequence Viewer

Length: 993 bp
ATGGAGGCGGTGAATGTTCAACCAATACAAGCGAGGAGGCCTTACGAGGGAGAAGAGTCGGAAGGCGACTATGTCGCCATGAATAATGGAGCCGGAGCGATTCCTTCTCAAGTCACAATGAGTCGCTGCAGCAATTCCACTCGCACCAGTGAGCTCACCATCGCCTTCGAGGGCGAGGTCTACGTTTTTCCCGCCGTTACTCCCGATAAGGTTCAAGCAGTACTGTTGCTACTGGGAGGACGTGATATACCAGGCAGTGATATACCAAGCAGCGTTCCTAGCTCTGGGTTTTCGATACAACAGAATAACAGGGGTATAGGGGACATCTCACGAAATTCAAAACTTTCACGAAGATTTGCATCTCTTGTTAGGTTCCGTGAAAAACGGAAAGAGAGATGCTTTGACAAGAAAATTCGGTACAGTTGTCGTAAAGACATTGCAGAGAGAATGCATCGGAAGAATGGACAGTTTGCATCTTTGAAGGATCCTTCCAAATTGGTTGCGGGGAATTGTGATTCAAGTGATAGCACTTCTTGTCCAGAATCTGTCTTACGTAGATGTCAGCACTGTGGGATTAGTGAAAAGTCTACCCCAGCAATGCGGCGGGGACCAAATGGCCCAAGATCTCTCTGTAATGCTTGTGGTCTTAGGTGGGCAAATAAGGGAACTTTGAGAGATCTTACAAAATCAGGGAGGGATGTTTCTTTCGACCAAAATGAGCTGGAAAGCCCAGAGGAGAATAAGCCTATTGCATTGGATGCTGAAGTCCCTCCTCTGAGACTGGGCGACCAGGACATGCTTGAAACTGCTGAAGCCGCTACTAATCAGGTATCCATCCAAATGGAGAATTCATCAGTCAACCTTGATGAGCAGGAGAATCTGGAAGAATTAGCCAATGCTTCAGGGACAGAATTTGAGATTCCTGCAAACTTCGAAGAGCAGGTGGTTGATTTTTACGATTGCAACATGGAGACTCACTGGGGAGGAACTTGA

Protein Analysis

330

Amino Acids

36.45

Weight (kDa)

5.15

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 49 - 79 6.6e-10 tify domain
CCT PF06203 118 - 159 2.3e-14 CCT motif
Jas_motif PF09425 118 - 141 2.5e-06 Jas motif
GATA PF00320 187 - 223 1.6e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 931
Acc36I ACCTGC 1 cut(s) 931
AccI GTMKAC 2 cut(s) 180, 587
AciI CCGC 6 cut(s) 8, 192, 503, 601, 604, 816
AclWI GGATC 2 cut(s) 479, 492
AcsI RAATTY 4 cut(s) 334, 411, 847, 911
AcuI CTGAAG 3 cut(s) 783, 831, 885
AfaI GTAC 2 cut(s) 222, 419
AfiI CCNNNNNNNGG 2 cut(s) 47, 284
AgsI TTSAA 6 cut(s) 20, 215, 339, 481, 519, 803
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 2 cut(s) 250, 789
AluBI AGCT 3 cut(s) 154, 282, 721
AluI AGCT 3 cut(s) 154, 282, 721
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 772, 965
AlwI GGATC 2 cut(s) 479, 492
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 2 cut(s) 38, 616
ApeKI GCWGC 3 cut(s) 126, 129, 270
ApoI RAATTY 4 cut(s) 334, 411, 847, 911
AspS9I GGNCC 2 cut(s) 608, 617
AsuHPI GGTGA 2 cut(s) 22, 148
AsuII TTCGAA 1 cut(s) 933
AvaII GGWCC 1 cut(s) 608
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BamHI GGATCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 113, 141, 282
BccI CCATC 2 cut(s) 167, 842
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 2 cut(s) 252, 791
BciVI GTATCC 1 cut(s) 841
BcoDI GTCTC 2 cut(s) 772, 965
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 931
BfuI GTATCC 1 cut(s) 841
BglII AGATCT 2 cut(s) 623, 676
BisI GCNGC 5 cut(s) 127, 130, 271, 602, 816
BlsI GCNGC 5 cut(s) 128, 131, 272, 603, 817
BmcAI AGTACT 1 cut(s) 222
Bme1390I CCNGG 2 cut(s) 252, 791
Bme18I GGWCC 1 cut(s) 608
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 608, 617
BmiI GGNNCC 4 cut(s) 91, 374, 486, 609
BmrFI CCNGG 2 cut(s) 252, 791
BmrI ACTGGG 3 cut(s) 242, 791, 988
BmsI GCATC 5 cut(s) 368, 386, 460, 482, 748
BmuI ACTGGG 3 cut(s) 242, 791, 988
Bpu14I TTCGAA 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 284
Bse1I ACTGG 4 cut(s) 147, 237, 786, 983
Bse3DI GCAATG 2 cut(s) 435, 603
Bse8I GATNNNNATC 1 cut(s) 358
BseBI CCWGG 2 cut(s) 252, 791
BseGI GGATG 3 cut(s) 703, 763, 834
BseJI GATNNNNATC 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 47, 284
BseMI GCAATG 2 cut(s) 435, 603
BseMII CTCAG 1 cut(s) 767
BseNI ACTGG 4 cut(s) 147, 237, 786, 983
BseRI GAGGAG 3 cut(s) 49, 749, 762
BseXI GCAGC 3 cut(s) 113, 141, 282
BseYI CCCAGC 1 cut(s) 592
BshFI GGCC 2 cut(s) 40, 618
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 4 cut(s) 335, 621, 752, 919
BslI CCNNNNNNNGG 2 cut(s) 47, 284
BsmAI GTCTC 2 cut(s) 772, 965
BsmFI GGGAC 4 cut(s) 335, 621, 752, 919
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 2 cut(s) 40, 618
Bsp119I TTCGAA 1 cut(s) 933
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 484, 623, 676
BspACI CCGC 6 cut(s) 8, 192, 503, 601, 604, 816
BspANI GGCC 2 cut(s) 40, 618
BspCNI CTCAG 1 cut(s) 768
BspLI GGNNCC 4 cut(s) 91, 374, 486, 609
BspMAI CTGCAG 1 cut(s) 131
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 2 cut(s) 479, 492
BspQI GCTCTTC 1 cut(s) 930
BspT104I TTCGAA 1 cut(s) 933
BsrDI GCAATG 2 cut(s) 435, 603
BsrI ACTGG 4 cut(s) 147, 237, 786, 983
BssMI GATC 3 cut(s) 484, 623, 676
Bst2UI CCWGG 2 cut(s) 252, 791
Bst4CI ACNGT 4 cut(s) 225, 422, 468, 569
Bst6I CTCTTC 2 cut(s) 48, 930
BstAPI GCANNNNNTGC 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 554
BstBI TTCGAA 1 cut(s) 933
BstDEI CTNAG 2 cut(s) 647, 776
BstF5I GGATG 3 cut(s) 703, 763, 834
BstKTI GATC 3 cut(s) 487, 626, 679
BstMAI GTCTC 2 cut(s) 772, 965
BstMBI GATC 3 cut(s) 484, 623, 676
BstMWI GCNNNNNNNGC 3 cut(s) 279, 758, 815
BstNI CCWGG 2 cut(s) 252, 791
BstNSI RCATGY 1 cut(s) 799
BstSCI CCNGG 2 cut(s) 250, 789
BstSFI CTRYAG 1 cut(s) 127
BstSNI TACGTA 1 cut(s) 554
BstV1I GCAGC 3 cut(s) 113, 141, 282
BstX2I RGATCY 3 cut(s) 484, 623, 676
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 3 cut(s) 484, 623, 676
BsuI GTATCC 1 cut(s) 841
BsuRI GGCC 2 cut(s) 40, 618
BtgZI GCGATG 1 cut(s) 145
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 3 cut(s) 703, 763, 834
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 4 cut(s) 154, 262, 565, 976
BveI ACCTGC 1 cut(s) 931
CaiI CAGNNNCTG 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 608, 617
Csp6I GTAC 2 cut(s) 221, 418
CviAII CATG 3 cut(s) 79, 796, 967
CviQI GTAC 2 cut(s) 221, 418
DdeI CTNAG 2 cut(s) 647, 776
DpnI GATC 3 cut(s) 486, 625, 678
DpnII GATC 3 cut(s) 484, 623, 676
Eam1104I CTCTTC 2 cut(s) 48, 930
EarI CTCTTC 2 cut(s) 48, 930
Ecl136II GAGCTC 1 cut(s) 154
Eco105I TACGTA 1 cut(s) 554
Eco147I AGGCCT 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 608
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 3 cut(s) 783, 831, 885
EcoICRI GAGCTC 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 847
EcoRII CCWGG 2 cut(s) 250, 789
EcoT22I ATGCAT 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 3 cut(s) 82, 799, 970
FaiI YATR 7 cut(s) 72, 80, 248, 263, 317, 797, 968
FaqI GGGAC 4 cut(s) 335, 621, 752, 919
FatI CATG 3 cut(s) 78, 795, 966
FauI CCCGC 3 cut(s) 199, 496, 597
FblI GTMKAC 2 cut(s) 180, 587
Fnu4HI GCNGC 5 cut(s) 127, 130, 271, 602, 816
FokI GGATG 3 cut(s) 710, 770, 821
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 5 cut(s) 127, 130, 271, 602, 816
FspBI CTAG 1 cut(s) 279
GluI GCNGC 5 cut(s) 127, 130, 271, 602, 816
GsaI CCCAGC 1 cut(s) 596
HaeIII GGCC 2 cut(s) 40, 618
HapII CCGG 1 cut(s) 93
Hin1II CATG 3 cut(s) 82, 799, 970
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 8 cut(s) 56, 100, 121, 515, 542, 877, 919, 973
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 22, 148
Hpy166II GTNNAC 3 cut(s) 181, 588, 859
Hpy188I TCNGA 3 cut(s) 61, 456, 777
Hpy188III TCNNGA 5 cut(s) 203, 330, 348, 539, 881
Hpy8I GTNNAC 3 cut(s) 181, 588, 859
HpyAV CCTTC 5 cut(s) 56, 114, 175, 475, 498
HpyCH4III ACNGT 4 cut(s) 225, 422, 468, 569
HpyCH4IV ACGT 3 cut(s) 183, 241, 553
HpyCH4V TGCA 8 cut(s) 129, 359, 440, 451, 473, 752, 926, 963
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 758, 815
HpyF3I CTNAG 2 cut(s) 647, 776
HpySE526I ACGT 3 cut(s) 183, 241, 553
Hsp92II CATG 3 cut(s) 82, 799, 970
Kzo9I GATC 3 cut(s) 484, 623, 676
LguI GCTCTTC 1 cut(s) 930
LmnI GCTCC 2 cut(s) 89, 95
Lsp1109I GCAGC 3 cut(s) 113, 141, 282
LweI GCATC 5 cut(s) 368, 386, 460, 482, 748
MaeI CTAG 1 cut(s) 279
MaeII ACGT 3 cut(s) 183, 241, 553
MaeIII GTNAC 2 cut(s) 112, 196
MalI GATC 3 cut(s) 486, 625, 678
MboI GATC 3 cut(s) 484, 623, 676
MboII GAAGA 5 cut(s) 65, 363, 469, 896, 947
MflI RGATCY 3 cut(s) 484, 623, 676
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 8 cut(s) 133, 334, 411, 494, 508, 847, 887, 911
MlyI GAGTC 3 cut(s) 65, 130, 967
MmeI TCCRAC 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 453
MslI CAYNNNNRTG 1 cut(s) 839
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 252, 791
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 2 cut(s) 252, 791
MwoI GCNNNNNNNGC 3 cut(s) 279, 758, 815
NdeII GATC 3 cut(s) 484, 623, 676
NlaIII CATG 3 cut(s) 82, 799, 970
NlaIV GGNNCC 4 cut(s) 91, 374, 486, 609
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 453
NspI RCATGY 1 cut(s) 799
NspV TTCGAA 1 cut(s) 933
PaqCI CACCTGC 1 cut(s) 931
PceI AGGCCT 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 930
PctI GAATGC 1 cut(s) 453
PfeI GAWTC 5 cut(s) 100, 515, 542, 877, 919
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 5 cut(s) 128, 131, 272, 603, 817
PleI GAGTC 3 cut(s) 64, 129, 967
PpsI GAGTC 3 cut(s) 64, 129, 967
Ppu21I YACGTR 1 cut(s) 554
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 250, 789
PspFI CCCAGC 1 cut(s) 592
PspGI CCWGG 2 cut(s) 250, 789
PspN4I GGNNCC 4 cut(s) 91, 374, 486, 609
PspPI GGNCC 2 cut(s) 608, 617
PstI CTGCAG 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 3 cut(s) 484, 623, 676
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 2 cut(s) 222, 419
RsaNI GTAC 2 cut(s) 221, 418
RseI CAYNNNNRTG 1 cut(s) 839
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 930
SatI GCNGC 5 cut(s) 127, 130, 271, 602, 816
Sau3AI GATC 3 cut(s) 484, 623, 676
Sau96I GGNCC 2 cut(s) 608, 617
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 3 cut(s) 65, 130, 967
ScrFI CCNGG 2 cut(s) 252, 791
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 5 cut(s) 368, 386, 460, 482, 748
SfcI CTRYAG 1 cut(s) 127
SfuI TTCGAA 1 cut(s) 933
SinI GGWCC 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SnaBI TACGTA 1 cut(s) 554
Sse9I AATT 8 cut(s) 133, 334, 411, 494, 508, 847, 887, 911
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 6 cut(s) 8, 192, 503, 601, 604, 816
SspMI CTAG 1 cut(s) 279
SstI GAGCTC 1 cut(s) 156
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 2 cut(s) 250, 789
TaaI ACNGT 4 cut(s) 225, 422, 468, 569
TaiI ACGT 3 cut(s) 186, 244, 556
TaqI TCGA 4 cut(s) 168, 293, 708, 933
TasI AATT 8 cut(s) 133, 334, 411, 494, 508, 847, 887, 911
TatI WGTACW 1 cut(s) 220
TauI GCSGC 2 cut(s) 604, 818
TfiI GAWTC 5 cut(s) 100, 515, 542, 877, 919
TscAI CASTG 4 cut(s) 154, 262, 572, 983
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 3 cut(s) 126, 129, 270
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 95, 840
TspGWI ACGGA 2 cut(s) 365, 400
TspRI CASTG 4 cut(s) 154, 262, 572, 983
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 608
XapI RAATTY 4 cut(s) 334, 411, 847, 911
XceI RCATGY 1 cut(s) 799
XmiI GTMKAC 2 cut(s) 180, 587
XspI CTAG 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.