Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Reverse (-)

28008352 .. 28008732

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCAAAACATAATTCTAAAACTGCTCAGTTAGCCTTGGGTACCTGTGTCTTGCTTGTTCAAATCAGTGTTTTCAACTGCGGAGGAATAGTTGTTGCTGTATCCCCTTTACATAAGATTGCAGATGGAACATCCCTTCACACATTTGTACGCTTCTGGGCAGCTATAAATCGCGGTGAGTACCATCAACTAGTGCTACCAGAGTTTAATGGAGAAACTTTGTTGCCGACTAAAGACTTGTCTGCCATGCACAACTTCATGGGACGGATCCCAACTCAAACTTTAACCACAAGAATGTTCATGTTTAATGTGTCAAAGATGGCAAGTCTCAAGGCTGAAATTGGTAGTAGAAGCCAAAAGTTCACCCCGACAAACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

126

Amino Acids

13.84

Weight (kDa)

9.83

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	16 - 81	5e-16	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	81, 174
AclWI	GGATC	2 cut(s)	262, 275
AfaI	GTAC	3 cut(s)	43, 150, 182
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	62, 76
AhlI	ACTAGT	1 cut(s)	190
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	262, 275
ApeKI	GCWGC	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	188, 355
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BamHI	GGATCC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	3 cut(s)	119, 192, 313
BciVI	GTATCC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	332
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	43, 269
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	81, 174
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	43, 269
BspPI	GGATC	2 cut(s)	262, 275
BspT107I	GGYRCC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	42, 149, 181
CviAII	CATG	3 cut(s)	247, 259, 301
CviJI	RGCY	4 cut(s)	35, 164, 335, 354
CviKI_1	RGCY	4 cut(s)	35, 164, 335, 354
CviQI	GTAC	3 cut(s)	42, 149, 181
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	250, 262, 304
FaiI	YATR	6 cut(s)	12, 114, 167, 248, 260, 302
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	3 cut(s)	246, 258, 300
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	250, 262, 304
HphI	GGTGA	2 cut(s)	188, 355
Hpy166II	GTNNAC	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	122, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	250, 262, 304
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	267
LpnPI	CCDG	3 cut(s)	58, 142, 213
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	191
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	2 cut(s)	13, 339
MnlI	CCTC	1 cut(s)	77
MseI	TTAA	3 cut(s)	207, 284, 306
MslI	CAYNNNNRTG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	3 cut(s)	250, 262, 304
NlaIV	GGNNCC	2 cut(s)	43, 269
PkrI	GCNGC	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	43, 269
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	3 cut(s)	43, 150, 182
RsaNI	GTAC	3 cut(s)	42, 149, 181
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	207, 284, 306
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	267
SetI	ASST	2 cut(s)	47, 166
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SpeI	ACTAGT	1 cut(s)	190
Sse9I	AATT	2 cut(s)	13, 339
SsiI	CCGC	2 cut(s)	81, 174
SspMI	CTAG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	36
TasI	AATT	2 cut(s)	13, 339
Tru1I	TTAA	3 cut(s)	207, 284, 306
Tru9I	TTAA	3 cut(s)	207, 284, 306
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	247, 289
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	73
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.