Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

1456683 .. 1462215

Gene Structure 5533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATGACATCTGTGGCAGCGATGAACCCATGCATATGAATGATAATCTGCATTTGCAATACATGCAAGATCATGAGCATCATCACGGGTTGGACCAAATAAGCAATGTAGATGGGGTGGCTGATGATCATGAAAATGGAAATGGTGGAGCTGAACTTGTCCAAGCCGATGTCCCATCTGACCCCATGAATCTTTCTGATACGCGTGATGGGATGATGGACCATGGCCCCGAAAATGGGGACCAGCTCACATTGTCGTTTCAGGGTCAGGTTTTCGTGTTCGATTCTGTGTCACCTGAGAAGGTTCAAGCTGTGTTGTTACTATTGGGGGGCCGTGAAGTACCTCCAAGTATGCCTGCTGTCCCAGTAACCACGCAGCATAATAATCAGGGCCTTACTAGTACTCCACAACGGTTGAGTGTCCCTCAAAGATTGGCTTCACTAATTAGATTCCGTGAAAAACGGAAAGAACGAAATTTTGACAAGAAGATTCGTTATACTGTTCGAAAAGAGGTAGCACTTAGGATGCAACGAAAGAAAGGTCAATTCACATCTTCTAAACCCAATAATGATGATTCTGCATCAGCCGTCACAAGTTCGGGCTCAAACGAGAGCTGGAGTCAGGATGGTAATGGATCGCAACATCAAGAGGCTGTCTGTCGACACTGTGGCATCAATGAGAAGTGTACACCAATGATGCGACGTGGACCTGATGGACCAAGAACCCTTTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTACTCTGAGGGACCTCTCCAAGGCAGCAGCAGCAGCAGCACCCCAAGCAGGACAAAACCCTTCCGTAAGCAAGAACGAAGATATCAAACCTGATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

288

Amino Acids

31.48

Weight (kDa)

5.87

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	862
AccI	GTMKAC	1 cut(s)	661
AccII	CGCG	1 cut(s)	205
AclWI	GGATC	1 cut(s)	643
AcsI	RAATTY	1 cut(s)	475
AfaI	GTAC	4 cut(s)	342, 403, 688, 766
AfiI	CCNNNNNNNGG	4 cut(s)	236, 237, 784, 812
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	308
AhlI	ACTAGT	1 cut(s)	398
AjiI	CACGTC	1 cut(s)	704
AluBI	AGCT	4 cut(s)	152, 247, 311, 615
AluI	AGCT	4 cut(s)	152, 247, 311, 615
AlwI	GGATC	1 cut(s)	643
AoxI	GGCC	3 cut(s)	226, 331, 391
ApeKI	GCWGC	7 cut(s)	18, 376, 788, 791, 794, 797, 800
ApoI	RAATTY	1 cut(s)	475
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
AspS9I	GGNCC	9 cut(s)	94, 220, 227, 241, 331, 391, 707, 716, 775
AsuHPI	GGTGA	1 cut(s)	285
AsuII	TTCGAA	1 cut(s)	505
AvaII	GGWCC	6 cut(s)	94, 220, 241, 707, 716, 775
BanII	GRGCYC	1 cut(s)	605
BbvI	GCAGC	7 cut(s)	30, 388, 800, 803, 806, 809, 812
BccI	CCATC	6 cut(s)	107, 184, 203, 211, 620, 707
BceAI	ACGGC	2 cut(s)	318, 572
BclI	TGATCA	1 cut(s)	127
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	1 cut(s)	399
BisI	GCNGC	7 cut(s)	19, 377, 789, 792, 795, 798, 801
BlsI	GCNGC	7 cut(s)	20, 378, 790, 793, 796, 799, 802
BmcAI	AGTACT	1 cut(s)	403
Bme18I	GGWCC	6 cut(s)	94, 220, 241, 707, 716, 775
BmgBI	CACGTC	1 cut(s)	704
BmgT120I	GGNCC	9 cut(s)	94, 220, 227, 241, 331, 391, 707, 716, 775
BmiI	GGNNCC	4 cut(s)	229, 242, 332, 776
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	5 cut(s)	88, 516, 590, 681, 687
BmuI	ACTGGG	1 cut(s)	359
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	1 cut(s)	637
Bpu14I	TTCGAA	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	223, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 237, 784, 812
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	112, 739
BseDI	CCNNGG	2 cut(s)	223, 783
BseGI	GGATG	4 cut(s)	10, 219, 531, 631
BseLI	CCNNNNNNNGG	4 cut(s)	236, 237, 784, 812
BseMI	GCAATG	2 cut(s)	112, 739
BseMII	CTCAG	2 cut(s)	288, 761
BseNI	ACTGG	1 cut(s)	365
BseXI	GCAGC	7 cut(s)	30, 388, 800, 803, 806, 809, 812
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	228, 333, 393
BslFI	GGGAC	5 cut(s)	158, 254, 347, 407, 788
BslI	CCNNNNNNNGG	4 cut(s)	236, 237, 784, 812
BsmFI	GGGAC	5 cut(s)	158, 254, 347, 407, 788
BsnI	GGCC	3 cut(s)	228, 333, 393
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp1407I	TGTACA	1 cut(s)	686
Bsp143I	GATC	3 cut(s)	70, 127, 635
Bsp19I	CCATGG	1 cut(s)	223
BspANI	GGCC	3 cut(s)	228, 333, 393
BspCNI	CTCAG	2 cut(s)	289, 762
BspFNI	CGCG	1 cut(s)	205
BspHI	TCATGA	2 cut(s)	73, 130
BspLI	GGNNCC	4 cut(s)	229, 242, 332, 776
BspPI	GGATC	1 cut(s)	643
BspT104I	TTCGAA	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	112, 739
BsrGI	TGTACA	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	223, 783
BssMI	GATC	3 cut(s)	70, 127, 635
BssT1I	CCWWGG	2 cut(s)	223, 783
Bst4CI	ACNGT	3 cut(s)	414, 502, 668
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	686
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	297, 521, 770
BstDSI	CCRYGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	782
BstF5I	GGATG	4 cut(s)	10, 219, 531, 631
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	3 cut(s)	73, 130, 638
BstMBI	GATC	3 cut(s)	70, 127, 635
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 794, 797, 800, 809
BstNSI	RCATGY	2 cut(s)	67, 741
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	7 cut(s)	30, 388, 800, 803, 806, 809, 812
BsuRI	GGCC	3 cut(s)	228, 333, 393
BtgI	CCRYGG	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	704
BtsCI	GGATG	4 cut(s)	10, 219, 531, 631
BtsIMutI	CAGTG	1 cut(s)	664
Cac8I	GCNNGC	1 cut(s)	357
CciI	TCATGA	2 cut(s)	73, 130
Cfr13I	GGNCC	9 cut(s)	94, 220, 227, 241, 331, 391, 707, 716, 775
Csp6I	GTAC	4 cut(s)	341, 402, 687, 765
CspCI	CAANNNNNGTGG	4 cut(s)	396, 431, 721, 756
CviAII	CATG	7 cut(s)	31, 64, 74, 131, 187, 224, 738
CviQI	GTAC	4 cut(s)	341, 402, 687, 765
DdeI	CTNAG	3 cut(s)	297, 521, 770
DpnI	GATC	3 cut(s)	72, 129, 637
DpnII	GATC	3 cut(s)	70, 127, 635
Eco130I	CCWWGG	2 cut(s)	223, 783
Eco24I	GRGCYC	1 cut(s)	605
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	6 cut(s)	94, 220, 241, 707, 716, 775
EcoNI	CCTNNNNNAGG	1 cut(s)	782
EcoO109I	RGGNCCY	2 cut(s)	391, 775
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	2 cut(s)	223, 783
EcoT22I	ATGCAT	2 cut(s)	36, 739
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	2 cut(s)	223, 783
FaeI	CATG	7 cut(s)	34, 67, 77, 134, 190, 227, 741
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FaqI	GGGAC	5 cut(s)	158, 254, 347, 407, 788
FatI	CATG	7 cut(s)	30, 63, 73, 130, 186, 223, 737
FauNDI	CATATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	7 cut(s)	19, 377, 789, 792, 795, 798, 801
FokI	GGATG	4 cut(s)	17, 226, 538, 638
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	7 cut(s)	19, 377, 789, 792, 795, 798, 801
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	7 cut(s)	19, 377, 789, 792, 795, 798, 801
GsuI	CTGGAG	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	228, 333, 393
Hin1II	CATG	7 cut(s)	34, 67, 77, 134, 190, 227, 741
HincII	GTYRAC	1 cut(s)	662
HindII	GTYRAC	1 cut(s)	662
HinfI	GANTC	6 cut(s)	190, 284, 450, 490, 575, 619
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	5 cut(s)	662, 687, 689, 707, 743
Hpy188I	TCNGA	3 cut(s)	181, 199, 771
Hpy188III	TCNNGA	4 cut(s)	74, 131, 623, 647
Hpy8I	GTNNAC	5 cut(s)	662, 687, 689, 707, 743
Hpy99I	CGWCG	1 cut(s)	705
HpyAV	CCTTC	2 cut(s)	295, 834
HpyCH4III	ACNGT	3 cut(s)	414, 502, 668
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	8 cut(s)	34, 52, 58, 67, 529, 581, 732, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 794, 797, 800, 809
HpyF3I	CTNAG	3 cut(s)	297, 521, 770
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	7 cut(s)	34, 67, 77, 134, 190, 227, 741
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	70, 127, 635
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	7 cut(s)	30, 388, 800, 803, 806, 809, 812
LweI	GCATC	5 cut(s)	88, 516, 590, 681, 687
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	4 cut(s)	291, 318, 367, 589
MalI	GATC	3 cut(s)	72, 129, 637
MboI	GATC	3 cut(s)	70, 127, 635
MboII	GAAGA	3 cut(s)	499, 546, 854
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	3 cut(s)	444, 475, 545
MluI	ACGCGT	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	354, 435, 505, 643, 765, 788
Mph1103I	ATGCAT	2 cut(s)	36, 739
MslI	CAYNNNNRTG	3 cut(s)	35, 39, 135
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	5 cut(s)	64, 794, 797, 800, 809
NcoI	CCATGG	1 cut(s)	223
NdeI	CATATG	1 cut(s)	36
NdeII	GATC	3 cut(s)	70, 127, 635
NlaIII	CATG	7 cut(s)	34, 67, 77, 134, 190, 227, 741
NlaIV	GGNNCC	4 cut(s)	229, 242, 332, 776
NmuCI	GTSAC	2 cut(s)	291, 589
NsiI	ATGCAT	2 cut(s)	36, 739
NspI	RCATGY	2 cut(s)	67, 741
NspV	TTCGAA	1 cut(s)	505
PagI	TCATGA	2 cut(s)	73, 130
PcsI	WCGNNNNNNNCGW	1 cut(s)	469
PfeI	GAWTC	5 cut(s)	190, 284, 450, 490, 575
PkrI	GCNGC	7 cut(s)	20, 378, 790, 793, 796, 799, 802
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
PpuMI	RGGWCCY	1 cut(s)	775
PsiI	TTATAA	1 cut(s)	862
Psp5II	RGGWCCY	1 cut(s)	775
PspN4I	GGNNCC	4 cut(s)	229, 242, 332, 776
PspPI	GGNCC	9 cut(s)	94, 220, 227, 241, 331, 391, 707, 716, 775
PspPPI	RGGWCCY	1 cut(s)	775
RsaI	GTAC	4 cut(s)	342, 403, 688, 766
RsaNI	GTAC	4 cut(s)	341, 402, 687, 765
RseI	CAYNNNNRTG	3 cut(s)	35, 39, 135
SalI	GTCGAC	1 cut(s)	660
SatI	GCNGC	7 cut(s)	19, 377, 789, 792, 795, 798, 801
Sau3AI	GATC	3 cut(s)	70, 127, 635
Sau96I	GGNCC	9 cut(s)	94, 220, 227, 241, 331, 391, 707, 716, 775
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	1 cut(s)	628
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	5 cut(s)	88, 516, 590, 681, 687
SfuI	TTCGAA	1 cut(s)	505
SinI	GGWCC	6 cut(s)	94, 220, 241, 707, 716, 775
SmiMI	CAYNNNNRTG	3 cut(s)	35, 39, 135
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	3 cut(s)	444, 475, 545
SspMI	CTAG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	223, 783
TaaI	ACNGT	3 cut(s)	414, 502, 668
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	3 cut(s)	282, 505, 661
TasI	AATT	3 cut(s)	444, 475, 545
TatI	WGTACW	2 cut(s)	401, 686
TfiI	GAWTC	5 cut(s)	190, 284, 450, 490, 575
TscAI	CASTG	1 cut(s)	671
TseFI	GTSAC	2 cut(s)	291, 589
TseI	GCWGC	7 cut(s)	18, 376, 788, 791, 794, 797, 800
Tsp45I	GTSAC	2 cut(s)	291, 589
TspDTI	ATGAA	4 cut(s)	39, 53, 147, 203
TspGWI	ACGGA	3 cut(s)	443, 478, 817
TspRI	CASTG	1 cut(s)	671
VpaK11BI	GGWCC	6 cut(s)	94, 220, 241, 707, 716, 775
XagI	CCTNNNNNAGG	1 cut(s)	782
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	2 cut(s)	67, 741
XmiI	GTMKAC	1 cut(s)	661
XspI	CTAG	1 cut(s)	399
ZrmI	AGTACT	1 cut(s)	403
Zsp2I	ATGCAT	2 cut(s)	36, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.