Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

4630435 .. 4635062

Gene Structure 4628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAGAGTCCGAGCACCAGAATTCAATTTACAGCAGCACAGGAGGAGTGACGCAGAGTAACCAAGTTGACGACCAAGACGACGACGTTGAAGAGCCCATTGACAACCCTAACATACGCTTCGAAGATAGTACCGCCATTCCTCCAAATCAACTCTACCTTCCCAGCTCCGAATACCCTCCGCCGGCAGCCGCAAACGGTGCCTCTGATCAGCTAACTCTCTCGTTTCATGGCGAGGTTTATGTCTTCGACGCTGTTTCGCCCGACAAGGTGCAGGCAGTACTGCTGCTTTTGGGTGGATATGAAATCCCTTCCGGCATTCCTTCCATGGGGCCAGTTCCTCTTAACCAGCAAGGTATGAATGACTTACCTGCAAGGCCAACTCAACCTCAGAGAGCTGCTTCTTTAAGTCGGTTTCGCGAGAAGAGAAAAGAACGTTGTTTTGATAAGAAAATCCGTTACACTGTGCGGAAAGAAGTTGCACTCAGAATGCAGCGTAAGAAGGGTCAATTTACATCGTCCAAGGGTAGTTCTGATGATGGAGGCCCTGTTTCATCAACACAGGGCTCTGGACAAGATGAGAGCATGCAGGAAACTTCGTGTACACATTGTGGGATAAGCTCAAAGTCAACTCCAATGATGCGTCGTGGGCCAGCAGGCCCAAGGACTCTATGTAATGCATGTGGGCTGAAGTGGGCCAACAAGGGATCTCTAACAGGTGTTCCTAAGGTTCTAAATGTAGGTATCCAGGATCCTTCTTTAAAGGGAATTGAACAGATTGATGGCGGAGTTCAGGATTCCGATGTTGTAGCCATGGGTGCCAACATTGCCCCTTCCTCAGCTAATGGCAATAATTCAGCCATGACCGTAGACAGGAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

295

Amino Acids

31.46

Weight (kDa)

5.51

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AccB1I	GGYRCC	2 cut(s)	200, 818
AccI	GTMKAC	1 cut(s)	870
AccII	CGCG	1 cut(s)	420
AciI	CCGC	5 cut(s)	135, 182, 192, 469, 786
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	3 cut(s)	715, 746, 759
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	710
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	3 cut(s)	133, 282, 604
AfiI	CCNNNNNNNGG	3 cut(s)	184, 329, 873
AgsI	TTSAA	3 cut(s)	27, 92, 773
AjnI	CCWGG	1 cut(s)	747
AluBI	AGCT	5 cut(s)	168, 214, 398, 621, 842
AluI	AGCT	5 cut(s)	168, 214, 398, 621, 842
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	715, 746, 759
AoxI	GGCC	6 cut(s)	332, 377, 544, 650, 658, 696
ApeKI	GCWGC	5 cut(s)	36, 188, 286, 398, 493
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	5 cut(s)	332, 545, 650, 659, 696
AsuII	TTCGAA	1 cut(s)	123
AxyI	CCTNAGG	1 cut(s)	726
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	2 cut(s)	200, 818
BanII	GRGCYC	2 cut(s)	99, 569
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	838
BbvI	GCAGC	5 cut(s)	48, 200, 273, 385, 505
BccI	CCATC	2 cut(s)	533, 776
BciT130I	CCWGG	1 cut(s)	749
BciVI	GTATCC	1 cut(s)	755
BclI	TGATCA	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	755
BisI	GCNGC	6 cut(s)	37, 189, 192, 287, 399, 494
BlsI	GCNGC	6 cut(s)	38, 190, 193, 288, 400, 495
BmcAI	AGTACT	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	749
BmgT120I	GGNCC	5 cut(s)	332, 545, 650, 659, 696
BmiI	GGNNCC	4 cut(s)	202, 333, 753, 820
BmrFI	CCNGG	1 cut(s)	749
BmsI	GCATC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	838
Bpu14I	TTCGAA	1 cut(s)	123
BsaJI	CCNNGG	4 cut(s)	327, 522, 662, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 329, 873
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	335
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	825
BseBI	CCWGG	1 cut(s)	749
BseDI	CCNNGG	4 cut(s)	327, 522, 662, 813
BseLI	CCNNNNNNNGG	3 cut(s)	184, 329, 873
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	3 cut(s)	404, 499, 852
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	5 cut(s)	48, 200, 273, 385, 505
BseYI	CCCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	6 cut(s)	334, 379, 546, 652, 660, 698
BshNI	GGYRCC	2 cut(s)	200, 818
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	185, 315
BslI	CCNNNNNNNGG	3 cut(s)	184, 329, 873
BsmI	GAATGC	2 cut(s)	318, 495
BsnI	GGCC	6 cut(s)	334, 379, 546, 652, 660, 698
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	3 cut(s)	18, 99, 569
Bsp1407I	TGTACA	1 cut(s)	602
Bsp143I	GATC	3 cut(s)	208, 707, 751
Bsp19I	CCATGG	2 cut(s)	327, 813
Bsp68I	TCGCGA	1 cut(s)	420
BspACI	CCGC	5 cut(s)	135, 182, 192, 469, 786
BspANI	GGCC	6 cut(s)	334, 379, 546, 652, 660, 698
BspCNI	CTCAG	3 cut(s)	403, 498, 851
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	202, 333, 753, 820
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	3 cut(s)	715, 746, 759
BspQI	GCTCTTC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	2 cut(s)	200, 818
BsrDI	GCAATG	1 cut(s)	825
BsrFI	RCCGGY	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	4 cut(s)	327, 522, 662, 813
BssMI	GATC	3 cut(s)	208, 707, 751
BssT1I	CCWWGG	4 cut(s)	327, 522, 662, 813
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	3 cut(s)	200, 466, 868
Bst6I	CTCTTC	2 cut(s)	87, 419
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	5 cut(s)	186, 276, 587, 654, 658
BstDEI	CTNAG	4 cut(s)	390, 485, 726, 838
BstDSI	CCRYGG	2 cut(s)	327, 813
BstFNI	CGCG	1 cut(s)	420
BstKTI	GATC	3 cut(s)	211, 710, 754
BstMBI	GATC	3 cut(s)	208, 707, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 649, 818, 827
BstNI	CCWGG	1 cut(s)	749
BstNSI	RCATGY	2 cut(s)	589, 684
BstSCI	CCNGG	1 cut(s)	747
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	5 cut(s)	48, 200, 273, 385, 505
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	707, 751
BstYI	RGATCY	2 cut(s)	707, 751
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	6 cut(s)	334, 379, 546, 652, 660, 698
BtgI	CCRYGG	2 cut(s)	327, 813
BtsIMutI	CAGTG	1 cut(s)	462
BtuMI	TCGCGA	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	5 cut(s)	186, 276, 587, 654, 658
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	5 cut(s)	332, 545, 650, 659, 696
CseI	GACGC	3 cut(s)	61, 260, 632
Csp6I	GTAC	3 cut(s)	132, 281, 603
CviAII	CATG	6 cut(s)	230, 328, 586, 681, 814, 862
CviQI	GTAC	3 cut(s)	132, 281, 603
DdeI	CTNAG	4 cut(s)	390, 485, 726, 838
DpnI	GATC	3 cut(s)	210, 709, 753
DpnII	GATC	3 cut(s)	208, 707, 751
DraI	TTTAAA	1 cut(s)	762
DraIII	CACNNNGTG	1 cut(s)	611
Eam1104I	CTCTTC	2 cut(s)	87, 419
EarI	CTCTTC	2 cut(s)	87, 419
EciI	GGCGGA	2 cut(s)	171, 801
Eco130I	CCWWGG	4 cut(s)	327, 522, 662, 813
Eco24I	GRGCYC	2 cut(s)	99, 569
Eco57I	CTGAAG	1 cut(s)	710
Eco81I	CCTNAGG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	747
EcoT14I	CCWWGG	4 cut(s)	327, 522, 662, 813
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	2 cut(s)	99, 569
ErhI	CCWWGG	4 cut(s)	327, 522, 662, 813
FaeI	CATG	6 cut(s)	233, 331, 589, 684, 817, 865
FatI	CATG	6 cut(s)	229, 327, 585, 680, 813, 861
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	6 cut(s)	37, 189, 192, 287, 399, 494
FriOI	GRGCYC	2 cut(s)	99, 569
Fsp4HI	GCNGC	6 cut(s)	37, 189, 192, 287, 399, 494
GluI	GCNGC	6 cut(s)	37, 189, 192, 287, 399, 494
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	6 cut(s)	334, 379, 546, 652, 660, 698
HapII	CCGG	2 cut(s)	185, 315
HgaI	GACGC	3 cut(s)	61, 260, 632
Hin1II	CATG	6 cut(s)	233, 331, 589, 684, 817, 865
HincII	GTYRAC	2 cut(s)	70, 630
HindII	GTYRAC	2 cut(s)	70, 630
HinfI	GANTC	3 cut(s)	8, 667, 797
HpaII	CCGG	2 cut(s)	185, 315
Hpy166II	GTNNAC	5 cut(s)	70, 603, 605, 630, 871
Hpy188I	TCNGA	7 cut(s)	13, 172, 208, 393, 488, 535, 802
Hpy188III	TCNNGA	3 cut(s)	419, 570, 794
Hpy8I	GTNNAC	5 cut(s)	70, 603, 605, 630, 871
Hpy99I	CGWCG	4 cut(s)	86, 89, 254, 648
HpyAV	CCTTC	6 cut(s)	170, 321, 333, 496, 765, 843
HpyCH4III	ACNGT	3 cut(s)	200, 466, 868
HpyCH4IV	ACGT	2 cut(s)	87, 436
HpyCH4V	TGCA	6 cut(s)	274, 374, 482, 493, 589, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 649, 818, 827
HpyF3I	CTNAG	4 cut(s)	390, 485, 726, 838
HpySE526I	ACGT	2 cut(s)	87, 436
Hsp92II	CATG	6 cut(s)	233, 331, 589, 684, 817, 865
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	208, 707, 751
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	5 cut(s)	48, 200, 273, 385, 505
LweI	GCATC	1 cut(s)	630
MaeII	ACGT	2 cut(s)	87, 436
MaeIII	GTNAC	3 cut(s)	49, 59, 458
MalI	GATC	3 cut(s)	210, 709, 753
MboI	GATC	3 cut(s)	208, 707, 751
MboII	GAAGA	4 cut(s)	104, 137, 238, 436
MflI	RGATCY	2 cut(s)	707, 751
MhlI	GDGCHC	3 cut(s)	18, 99, 569
MluCI	AATT	6 cut(s)	22, 27, 509, 768, 853, 878
MlyI	GAGTC	2 cut(s)	17, 661
MnlI	CCTC	9 cut(s)	38, 153, 189, 214, 229, 351, 399, 536, 847
Mph1103I	ATGCAT	1 cut(s)	682
MroNI	GCCGGC	1 cut(s)	184
MseI	TTAA	3 cut(s)	345, 407, 761
MspI	CCGG	2 cut(s)	185, 315
MspR9I	CCNGG	1 cut(s)	749
Mva1269I	GAATGC	2 cut(s)	318, 495
MvaI	CCWGG	1 cut(s)	749
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	4 cut(s)	200, 649, 818, 827
NaeI	GCCGGC	1 cut(s)	186
NcoI	CCATGG	2 cut(s)	327, 813
NdeII	GATC	3 cut(s)	208, 707, 751
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	6 cut(s)	233, 331, 589, 684, 817, 865
NlaIV	GGNNCC	4 cut(s)	202, 333, 753, 820
NmuCI	GTSAC	1 cut(s)	49
NruI	TCGCGA	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	2 cut(s)	589, 684
NspV	TTCGAA	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	2 cut(s)	318, 495
PdiI	GCCGGC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	797
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	6 cut(s)	38, 190, 193, 288, 400, 495
PleI	GAGTC	2 cut(s)	16, 661
PpsI	GAGTC	2 cut(s)	16, 661
Psp1406I	AACGTT	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	747
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	4 cut(s)	202, 333, 753, 820
PspPI	GGNCC	5 cut(s)	332, 545, 650, 659, 696
PsuI	RGATCY	2 cut(s)	707, 751
RruI	TCGCGA	1 cut(s)	420
RsaI	GTAC	3 cut(s)	133, 282, 604
RsaNI	GTAC	3 cut(s)	132, 281, 603
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	345, 407, 761
SatI	GCNGC	6 cut(s)	37, 189, 192, 287, 399, 494
Sau3AI	GATC	3 cut(s)	208, 707, 751
Sau96I	GGNCC	5 cut(s)	332, 545, 650, 659, 696
ScaI	AGTACT	1 cut(s)	282
SchI	GAGTC	2 cut(s)	17, 661
ScrFI	CCNGG	1 cut(s)	749
SduI	GDGCHC	3 cut(s)	18, 99, 569
SfaNI	GCATC	1 cut(s)	630
SfuI	TTCGAA	1 cut(s)	123
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	6 cut(s)	22, 27, 509, 768, 853, 878
SsiI	CCGC	5 cut(s)	135, 182, 192, 469, 786
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	4 cut(s)	327, 522, 662, 813
TaaI	ACNGT	3 cut(s)	200, 466, 868
TaiI	ACGT	2 cut(s)	90, 439
TaqI	TCGA	2 cut(s)	123, 249
TasI	AATT	6 cut(s)	22, 27, 509, 768, 853, 878
TatI	WGTACW	2 cut(s)	280, 602
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	3 cut(s)	345, 407, 761
Tru9I	TTAA	3 cut(s)	345, 407, 761
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	5 cut(s)	36, 188, 286, 398, 493
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	218, 318, 374, 543
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	2 cut(s)	589, 684
XmiI	GTMKAC	1 cut(s)	870
ZrmI	AGTACT	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.