Rw7G036810

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
55721336 .. 55726154
4819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036810.1

Sequence Viewer

Length: 1080 bp
ATGGCGGCCGTGAATCCACAGCCTCTGCAAGCGCGTCGTCCGTACGAGGACCACGTGGCGGCGGGTTCGTTTCAGATGGAGGACGATGAGGGCGGCGAGTACGAAGACGGTGGCGGCGACGAGGCTATTATGGAGGAGGAGGAGGAAGAGGAGGTTCACGTGAGCTCGGCGGCGGCGGCGGCGGCGCGTGGGGGAGTGAGTGTGCTTACGGCGGCGACGAGGACTAGTGAGCTCACTCTCTCTTTTGAAGGCGAGGTTTATGTGTTTCCTGCCGTTACGCCCCAGAAGGTACAAGCAGTGCTATTGCTGTTGGGAGGACGTGATGCACCAACTGGCGTTCCTAGGGTTGAAATGTCTTACGATCAGAATACAAGGGGTGTGGGTGACACCCCAAAGCGTTCGAATCTTTCCCGAAGAATAGCTTCCCTTGTTAGATTTCGTGAGAAACGGAAGGAGAGGTGTTTTGACAAGAAAATTAGGTACACTGTGCGTAAAGAGGTTGCACAGAGAATGCACCGTAAGAATGGACAGTTCGCATCGTTAAAAGAAAATTCTAGCGGTTCTGGTTGGGACTCGGCACAAAGTTCCCTTCAAGATGGCACTCCTCGACCTGAAACTGTCTTACGAAGATGTCAACACTGTGGAGTTAGTGAAAATAATACTCCTGCTATGCGCCGAGGGCCTGCTGGTCCAAGAACTTTATGTAATGCTTGTGGACTTATGTGGGCGAATAAGGGAACATTGAGAGATCTCAGCAAGGGAGGAAGGAACCTTTCCATGGACCACATTGAACCTCAGGGAACACCACTTGAAATCAAGCCTTCAATAGTTGAATGTGAATTCTCTGGCAACCAGGATGGGCATGGAGCTCGTGAAGATCCTTCTAAATCAGTCATTGAAGGTTCCAATGATGCTTCTGTCAACCTGGATGTGGAAAATTTTCAAGAATCTGCCGAGGATCTTACAAACACTTTGCCTATGGGAATTGTTTCCTCAACCAATGATGTTGAGCAGGAGCCTCTGCTTGAGCTCACTAATACTTCAGATACAGATTTAGACATCCCTACTAATTTTGATTAG

Protein Analysis

359

Amino Acids

39.15

Weight (kDa)

4.89

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 75 - 105 1.8e-09 tify domain
CCT PF06203 139 - 180 7.5e-14 CCT motif
Jas_motif PF09425 139 - 161 7.1e-07 Jas motif
GATA PF00320 211 - 247 2.4e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 34, 187
AclWI GGATC 2 cut(s) 872, 966
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 550, 839, 937
AcuI CTGAAG 1 cut(s) 1026
AcvI CACGTG 2 cut(s) 55, 160
AfaI GTAC 4 cut(s) 44, 101, 291, 482
AfiI CCNNNNNNNGG 3 cut(s) 58, 778, 931
AgsI TTSAA 9 cut(s) 248, 350, 593, 791, 812, 825, 833, 899, 944
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 2 cut(s) 852, 924
AluBI AGCT 5 cut(s) 165, 232, 422, 869, 1030
AluI AGCT 5 cut(s) 165, 232, 422, 869, 1030
Alw21I GWGCWC 4 cut(s) 167, 234, 871, 1032
AlwI GGATC 2 cut(s) 872, 966
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 2 cut(s) 6, 680
ApoI RAATTY 3 cut(s) 550, 839, 937
Asp700I GAANNNNTTC 3 cut(s) 421, 939, 988
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 3 cut(s) 34, 187, 675
AspS9I GGNCC 4 cut(s) 49, 680, 689, 781
AsuHPI GGTGA 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 3 cut(s) 49, 689, 781
AvrII CCTAGG 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 795
BanII GRGCYC 4 cut(s) 167, 234, 871, 1032
BauI CACGAG 1 cut(s) 870
BbrPI CACGTG 2 cut(s) 55, 160
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 4 cut(s) 167, 234, 871, 1032
BccI CCATC 3 cut(s) 70, 590, 851
BceAI ACGGC 2 cut(s) 225, 257
BcgI CGANNNNNNTGC 4 cut(s) 17, 51, 851, 885
BciT130I CCWGG 2 cut(s) 854, 926
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 225, 342, 555
BglII AGATCT 1 cut(s) 748
BlnI CCTAGG 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 854, 926
Bme18I GGWCC 3 cut(s) 49, 689, 781
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 49, 680, 689, 781
BmiI GGNNCC 3 cut(s) 770, 904, 1017
BmrFI CCNGG 2 cut(s) 854, 926
BmsI GCATC 3 cut(s) 313, 545, 901
BpiI GAAGAC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 1046
BsaAI YACGTR 2 cut(s) 55, 160
BsaJI CCNNGG 4 cut(s) 341, 676, 777, 954
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 778, 931
Bse1I ACTGG 1 cut(s) 337
Bse21I CCTNAGG 1 cut(s) 795
BseBI CCWGG 2 cut(s) 854, 926
BseDI CCNNGG 4 cut(s) 341, 676, 777, 954
BseGI GGATG 3 cut(s) 862, 934, 1059
BseLI CCNNNNNNNGG 3 cut(s) 58, 778, 931
BseMII CTCAG 2 cut(s) 766, 809
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 5 cut(s) 149, 152, 155, 164, 594
BseX3I CGGCCG 1 cut(s) 6
Bsh1236I CGCG 2 cut(s) 34, 187
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 682
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 4 cut(s) 167, 234, 871, 1032
BsiWI CGTACG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 3 cut(s) 58, 778, 931
BsmFI GGGAC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 516
BsnI GGCC 2 cut(s) 8, 682
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 4 cut(s) 167, 234, 871, 1032
Bsp143I GATC 4 cut(s) 361, 748, 877, 958
Bsp19I CCATGG 1 cut(s) 777
BspANI GGCC 2 cut(s) 8, 682
BspCNI CTCAG 2 cut(s) 765, 808
BspFNI CGCG 2 cut(s) 34, 187
BspLI GGNNCC 3 cut(s) 770, 904, 1017
BspPI GGATC 2 cut(s) 872, 966
BspT104I TTCGAA 1 cut(s) 401
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 4 cut(s) 341, 676, 777, 954
BssMI GATC 4 cut(s) 361, 748, 877, 958
BssSI CACGAG 1 cut(s) 870
BssT1I CCWWGG 2 cut(s) 341, 777
Bst2BI CACGAG 1 cut(s) 870
Bst2UI CCWGG 2 cut(s) 854, 926
Bst4CI ACNGT 6 cut(s) 110, 487, 518, 531, 619, 641
Bst6I CTCTTC 1 cut(s) 141
BstBAI YACGTR 2 cut(s) 55, 160
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 30, 684
BstDEI CTNAG 2 cut(s) 752, 795
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 3 cut(s) 862, 934, 1059
BstFNI CGCG 2 cut(s) 34, 187
BstHHI GCGC 3 cut(s) 34, 187, 675
BstKTI GATC 4 cut(s) 364, 751, 880, 961
BstMBI GATC 4 cut(s) 361, 748, 877, 958
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 176, 179, 182, 679
BstNI CCWGG 2 cut(s) 854, 926
BstSCI CCNGG 2 cut(s) 852, 924
BstUI CGCG 2 cut(s) 34, 187
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 3 cut(s) 748, 877, 958
BstYI RGATCY 3 cut(s) 748, 877, 958
BstZI CGGCCG 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 795
BsuRI GGCC 2 cut(s) 8, 682
BtgI CCRYGG 1 cut(s) 777
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 3 cut(s) 862, 934, 1059
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 303, 483, 637
Cac8I GCNNGC 2 cut(s) 30, 684
CaiI CAGNNNCTG 1 cut(s) 25
CfoI GCGC 3 cut(s) 34, 187, 675
Cfr13I GGNCC 4 cut(s) 49, 680, 689, 781
CseI GACGC 1 cut(s) 23
Csp6I GTAC 4 cut(s) 43, 100, 290, 481
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 2 cut(s) 778, 863
CviQI GTAC 4 cut(s) 43, 100, 290, 481
DdeI CTNAG 2 cut(s) 752, 795
DpnI GATC 4 cut(s) 363, 750, 879, 960
DpnII GATC 4 cut(s) 361, 748, 877, 958
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Ecl136II GAGCTC 4 cut(s) 165, 232, 869, 1030
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 341, 777
Eco24I GRGCYC 4 cut(s) 167, 234, 871, 1032
Eco47I GGWCC 3 cut(s) 49, 689, 781
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 4 cut(s) 165, 232, 869, 1030
Eco57I CTGAAG 1 cut(s) 1026
Eco72I CACGTG 2 cut(s) 55, 160
Eco81I CCTNAGG 1 cut(s) 795
EcoICRI GAGCTC 4 cut(s) 165, 232, 869, 1030
EcoO109I RGGNCCY 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 839
EcoRII CCWGG 2 cut(s) 852, 924
EcoT14I CCWWGG 2 cut(s) 341, 777
EcoT38I GRGCYC 4 cut(s) 167, 234, 871, 1032
ErhI CCWWGG 2 cut(s) 341, 777
FaeI CATG 2 cut(s) 781, 866
FaiI YATR 8 cut(s) 131, 261, 671, 703, 722, 779, 864, 980
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 1 cut(s) 584
FatI CATG 2 cut(s) 777, 862
FauI CCCGC 1 cut(s) 55
FokI GGATG 3 cut(s) 869, 941, 1046
FriOI GRGCYC 4 cut(s) 167, 234, 871, 1032
FspBI CTAG 3 cut(s) 225, 342, 555
GlaI GCGC 3 cut(s) 33, 186, 674
HaeIII GGCC 2 cut(s) 8, 682
HgaI GACGC 1 cut(s) 23
HhaI GCGC 3 cut(s) 34, 187, 675
Hin1II CATG 2 cut(s) 781, 866
Hin6I GCGC 3 cut(s) 32, 185, 673
HinP1I GCGC 3 cut(s) 32, 185, 673
HincII GTYRAC 2 cut(s) 635, 922
HindII GTYRAC 2 cut(s) 635, 922
HinfI GANTC 4 cut(s) 13, 403, 572, 947
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 5 cut(s) 157, 483, 635, 716, 922
Hpy188I TCNGA 3 cut(s) 75, 366, 1045
Hpy188III TCNNGA 5 cut(s) 411, 440, 593, 872, 944
Hpy8I GTNNAC 5 cut(s) 157, 483, 635, 716, 922
Hpy99I CGWCG 3 cut(s) 39, 122, 220
HpyAV CCTTC 8 cut(s) 242, 280, 445, 599, 759, 831, 891, 893
HpyCH4III ACNGT 6 cut(s) 110, 487, 518, 531, 619, 641
HpyCH4IV ACGT 3 cut(s) 54, 159, 319
HpyCH4V TGCA 4 cut(s) 28, 326, 503, 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 179, 182, 679
HpyF3I CTNAG 2 cut(s) 752, 795
HpySE526I ACGT 3 cut(s) 54, 159, 319
Hsp92II CATG 2 cut(s) 781, 866
HspAI GCGC 3 cut(s) 32, 185, 673
Kzo9I GATC 4 cut(s) 361, 748, 877, 958
LmnI GCTCC 2 cut(s) 866, 1015
LweI GCATC 3 cut(s) 313, 545, 901
MaeI CTAG 3 cut(s) 225, 342, 555
MaeII ACGT 3 cut(s) 54, 159, 319
MaeIII GTNAC 2 cut(s) 274, 383
MalI GATC 4 cut(s) 363, 750, 879, 960
MboI GATC 4 cut(s) 361, 748, 877, 958
MboII GAAGA 5 cut(s) 116, 158, 426, 639, 887
MflI RGATCY 3 cut(s) 748, 877, 958
MhlI GDGCHC 4 cut(s) 167, 234, 871, 1032
MluCI AATT 6 cut(s) 474, 550, 839, 937, 984, 1069
MlyI GAGTC 1 cut(s) 566
MroXI GAANNNNTTC 3 cut(s) 421, 939, 988
MseI TTAA 1 cut(s) 542
MspR9I CCNGG 2 cut(s) 854, 926
Mva1269I GAATGC 1 cut(s) 516
MvaI CCWGG 2 cut(s) 854, 926
MvnI CGCG 2 cut(s) 34, 187
MwoI GCNNNNNNNGC 4 cut(s) 176, 179, 182, 679
NcoI CCATGG 1 cut(s) 777
NdeII GATC 4 cut(s) 361, 748, 877, 958
NlaIII CATG 2 cut(s) 781, 866
NlaIV GGNNCC 3 cut(s) 770, 904, 1017
NmeAIII GCCGAG 4 cut(s) 146, 554, 701, 979
NmuCI GTSAC 1 cut(s) 383
NspV TTCGAA 1 cut(s) 401
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 114, 215
PctI GAATGC 1 cut(s) 516
PdmI GAANNNNTTC 3 cut(s) 421, 939, 988
PfeI GAWTC 3 cut(s) 13, 403, 947
Pfl23II CGTACG 1 cut(s) 42
PleI GAGTC 1 cut(s) 566
PmaCI CACGTG 2 cut(s) 55, 160
PmlI CACGTG 2 cut(s) 55, 160
PpsI GAGTC 1 cut(s) 566
Ppu21I YACGTR 2 cut(s) 55, 160
Psp124BI GAGCTC 4 cut(s) 167, 234, 871, 1032
Psp6I CCWGG 2 cut(s) 852, 924
PspCI CACGTG 2 cut(s) 55, 160
PspGI CCWGG 2 cut(s) 852, 924
PspLI CGTACG 1 cut(s) 42
PspN4I GGNNCC 3 cut(s) 770, 904, 1017
PspPI GGNCC 4 cut(s) 49, 680, 689, 781
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 3 cut(s) 748, 877, 958
RsaI GTAC 4 cut(s) 44, 101, 291, 482
RsaNI GTAC 4 cut(s) 43, 100, 290, 481
SacI GAGCTC 4 cut(s) 167, 234, 871, 1032
SaqAI TTAA 1 cut(s) 542
Sau3AI GATC 4 cut(s) 361, 748, 877, 958
Sau96I GGNCC 4 cut(s) 49, 680, 689, 781
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 854, 926
SduI GDGCHC 4 cut(s) 167, 234, 871, 1032
SfaNI GCATC 3 cut(s) 313, 545, 901
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 3 cut(s) 49, 689, 781
SmlI CTYRAG 1 cut(s) 1025
SmoI CTYRAG 1 cut(s) 1025
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 6 cut(s) 474, 550, 839, 937, 984, 1069
SspMI CTAG 3 cut(s) 225, 342, 555
SstI GAGCTC 4 cut(s) 167, 234, 871, 1032
StyD4I CCNGG 2 cut(s) 852, 924
StyI CCWWGG 2 cut(s) 341, 777
TaaI ACNGT 6 cut(s) 110, 487, 518, 531, 619, 641
TaiI ACGT 3 cut(s) 57, 162, 322
TaqI TCGA 2 cut(s) 401, 607
TasI AATT 6 cut(s) 474, 550, 839, 937, 984, 1069
TfiI GAWTC 3 cut(s) 13, 403, 947
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 3 cut(s) 303, 490, 644
TseFI GTSAC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 383
TspGWI ACGGA 2 cut(s) 30, 463
TspRI CASTG 3 cut(s) 303, 490, 644
VpaK11BI GGWCC 3 cut(s) 49, 689, 781
XapI RAATTY 3 cut(s) 550, 839, 937
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XmaJI CCTAGG 1 cut(s) 341
XmnI GAANNNNTTC 3 cut(s) 421, 939, 988
XspI CTAG 3 cut(s) 225, 342, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.