MD05G1048600.v1.1

GATA transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
8246027 .. 8251259
5233 bp
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UTR
Exon/CDS
Intron
MD05G1048600.v1.1.491

Sequence Viewer

Length: 885 bp
ATGGCAGAATCCGAGCACCAGAATTCAATTTACAGCAGCACAGGAGGAGTGACGCAGAGTAACCAAGTTGACGACCAAGACGACGACGTTGAAGAGCCCATTGACAACCCTAACATCCGCTTCGAAGATAGTACCGCCATTCCTCCAAATCAACTCTACCTTCCCAGCTCCGAATACCCTCCGCCGGCCGCCGCAAACGGTGCCTCTGATCAGCTAACTCTCTCGTTTCAGGGCGAGGTTTATGTCTTCGACGCTGTTTCGCCCGACAAGGTGCAGGCAGTACTGCTACTTTTGGGTGGATATGAAATCCCTTCTGGCATTCCTTCCATGGGGCCGGTTCCTCTAAACCAGCAAGGTATGAATGACTTACCTGCAAAGCCAACTCAACCGCAGAGAGCTGCTTCTTTAAGTCGGTTTCGCGAGAAGAGAAAAGAACGTTGTTTTGATAAGAAAATCCGTTACACCGTGCGGAAAGAAGTTGCACTCAGAATGCAGCGTAAGAAGGGTCAATTTACATCGTCCAAGGCTAGTTCTGATGATGGAGGCCCTGCTTCATCAACACAGGGCTCTGGACAAGATGAGAGCATGCAGGAAACTTCGTGTACACATTGTGGGATAAGCTCAAAGTCAACTCCAATGATGCGTCGTGGGCCAGCAGGCCCAAGGACACTATGTAATGCATGTGGGCTGAAGTGGGCCAACAAGGGATCTCTAACAGGTGTTCCTAAGGTTCTAAATGTCGGTATCCAGGATCCTTCTTTAAAGGGAATTGAACAGATTGTTGGTGGAGTTCAGGATTCCGATGTTGTAGCCATTGGTGCCAACATTGCCCCTTCCTCAGCTAATGGCGATAATTCAGCCATGACCGTAGACAGGAAATTGTGA

Protein Analysis

295

Amino Acids

31.37

Weight (kDa)

5.37

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 68 - 99 3.3e-12 tify domain
Jas_motif PF09425 131 - 154 1.3e-07 Jas motif
CCT PF06203 132 - 174 1.5e-15 CCT motif
GATA PF00320 201 - 237 4e-12 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
AccB1I GGYRCC 2 cut(s) 200, 818
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 420
AciI CCGC 7 cut(s) 118, 135, 182, 189, 192, 389, 469
AclI AACGTT 1 cut(s) 436
AclWI GGATC 3 cut(s) 715, 746, 759
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 710
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 3 cut(s) 133, 282, 604
AfiI CCNNNNNNNGG 3 cut(s) 184, 329, 873
AgsI TTSAA 3 cut(s) 27, 92, 773
AjnI CCWGG 1 cut(s) 747
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AluBI AGCT 5 cut(s) 168, 214, 398, 621, 842
AluI AGCT 5 cut(s) 168, 214, 398, 621, 842
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 3 cut(s) 715, 746, 759
AoxI GGCC 6 cut(s) 186, 332, 544, 650, 658, 696
ApeKI GCWGC 3 cut(s) 36, 398, 493
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 5 cut(s) 332, 545, 650, 659, 696
AsuII TTCGAA 1 cut(s) 123
AxyI CCTNAGG 1 cut(s) 726
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 2 cut(s) 200, 818
BanII GRGCYC 2 cut(s) 99, 569
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 18
BbvCI CCTCAGC 1 cut(s) 838
BbvI GCAGC 3 cut(s) 48, 385, 505
BccI CCATC 1 cut(s) 533
BciT130I CCWGG 1 cut(s) 749
BciVI GTATCC 1 cut(s) 755
BclI TGATCA 1 cut(s) 208
BfaI CTAG 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 379
BfuI GTATCC 1 cut(s) 755
BisI GCNGC 5 cut(s) 37, 189, 192, 399, 494
BlsI GCNGC 5 cut(s) 38, 190, 193, 400, 495
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 749
BmgT120I GGNCC 5 cut(s) 332, 545, 650, 659, 696
BmiI GGNNCC 5 cut(s) 202, 333, 339, 753, 820
BmrFI CCNGG 1 cut(s) 749
BmsI GCATC 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 838
Bpu14I TTCGAA 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 327, 522, 662
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 329, 873
Bse118I RCCGGY 2 cut(s) 184, 334
Bse21I CCTNAGG 1 cut(s) 726
Bse3DI GCAATG 1 cut(s) 825
BseBI CCWGG 1 cut(s) 749
BseDI CCNNGG 3 cut(s) 327, 522, 662
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 3 cut(s) 184, 329, 873
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 2 cut(s) 499, 852
BseRI GAGGAG 1 cut(s) 60
BseX3I CGGCCG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 48, 385, 505
BseYI CCCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 420
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 6 cut(s) 188, 334, 546, 652, 660, 698
BshNI GGYRCC 2 cut(s) 200, 818
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 185, 335
BslI CCNNNNNNNGG 3 cut(s) 184, 329, 873
BsmI GAATGC 2 cut(s) 318, 495
BsnI GGCC 6 cut(s) 188, 334, 546, 652, 660, 698
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 3 cut(s) 18, 99, 569
Bsp1407I TGTACA 1 cut(s) 602
Bsp143I GATC 3 cut(s) 208, 707, 751
Bsp19I CCATGG 1 cut(s) 327
Bsp68I TCGCGA 1 cut(s) 420
BspACI CCGC 7 cut(s) 118, 135, 182, 189, 192, 389, 469
BspANI GGCC 6 cut(s) 188, 334, 546, 652, 660, 698
BspCNI CTCAG 2 cut(s) 498, 851
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 5 cut(s) 202, 333, 339, 753, 820
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 3 cut(s) 715, 746, 759
BspQI GCTCTTC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 2 cut(s) 200, 818
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 2 cut(s) 184, 334
BsrGI TGTACA 1 cut(s) 602
BssAI RCCGGY 2 cut(s) 184, 334
BssECI CCNNGG 3 cut(s) 327, 522, 662
BssMI GATC 3 cut(s) 208, 707, 751
BssT1I CCWWGG 3 cut(s) 327, 522, 662
Bst2UI CCWGG 1 cut(s) 749
Bst4CI ACNGT 3 cut(s) 200, 466, 868
Bst6I CTCTTC 2 cut(s) 87, 419
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 602
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 5 cut(s) 186, 276, 587, 654, 658
BstDEI CTNAG 3 cut(s) 485, 726, 838
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 420
BstKTI GATC 3 cut(s) 211, 710, 754
BstMBI GATC 3 cut(s) 208, 707, 751
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 4 cut(s) 200, 649, 818, 827
BstNI CCWGG 1 cut(s) 749
BstNSI RCATGY 2 cut(s) 589, 684
BstSCI CCNGG 1 cut(s) 747
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 3 cut(s) 48, 385, 505
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 2 cut(s) 707, 751
BstYI RGATCY 2 cut(s) 707, 751
BstZI CGGCCG 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 726
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 6 cut(s) 188, 334, 546, 652, 660, 698
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 114
BtuMI TCGCGA 1 cut(s) 420
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 5 cut(s) 186, 276, 587, 654, 658
Cfr10I RCCGGY 2 cut(s) 184, 334
Cfr13I GGNCC 5 cut(s) 332, 545, 650, 659, 696
CseI GACGC 3 cut(s) 61, 260, 632
Csp6I GTAC 3 cut(s) 132, 281, 603
CviAII CATG 4 cut(s) 328, 586, 681, 862
CviQI GTAC 3 cut(s) 132, 281, 603
DdeI CTNAG 3 cut(s) 485, 726, 838
DpnI GATC 3 cut(s) 210, 709, 753
DpnII GATC 3 cut(s) 208, 707, 751
DraI TTTAAA 1 cut(s) 762
DraIII CACNNNGTG 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 186
EagI CGGCCG 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 87, 419
EarI CTCTTC 2 cut(s) 87, 419
EciI GGCGGA 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 186
Eco130I CCWWGG 3 cut(s) 327, 522, 662
Eco24I GRGCYC 2 cut(s) 99, 569
Eco52I CGGCCG 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 710
Eco81I CCTNAGG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 747
EcoT14I CCWWGG 3 cut(s) 327, 522, 662
EcoT22I ATGCAT 1 cut(s) 682
EcoT38I GRGCYC 2 cut(s) 99, 569
ErhI CCWWGG 3 cut(s) 327, 522, 662
FaeI CATG 4 cut(s) 331, 589, 684, 865
FaiI YATR 8 cut(s) 243, 303, 329, 359, 587, 673, 682, 863
FatI CATG 4 cut(s) 327, 585, 680, 861
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 5 cut(s) 37, 189, 192, 399, 494
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 2 cut(s) 99, 569
Fsp4HI GCNGC 5 cut(s) 37, 189, 192, 399, 494
FspBI CTAG 1 cut(s) 528
GluI GCNGC 5 cut(s) 37, 189, 192, 399, 494
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 6 cut(s) 188, 334, 546, 652, 660, 698
HapII CCGG 2 cut(s) 185, 335
HgaI GACGC 3 cut(s) 61, 260, 632
Hin1II CATG 4 cut(s) 331, 589, 684, 865
HincII GTYRAC 2 cut(s) 70, 630
HindII GTYRAC 2 cut(s) 70, 630
HinfI GANTC 2 cut(s) 8, 797
HpaII CCGG 2 cut(s) 185, 335
Hpy166II GTNNAC 5 cut(s) 70, 603, 605, 630, 871
Hpy188I TCNGA 6 cut(s) 13, 172, 208, 488, 535, 802
Hpy188III TCNNGA 3 cut(s) 419, 570, 794
Hpy8I GTNNAC 5 cut(s) 70, 603, 605, 630, 871
Hpy99I CGWCG 4 cut(s) 86, 89, 254, 648
HpyAV CCTTC 6 cut(s) 170, 321, 333, 496, 765, 843
HpyCH4III ACNGT 3 cut(s) 200, 466, 868
HpyCH4IV ACGT 2 cut(s) 87, 436
HpyCH4V TGCA 6 cut(s) 274, 374, 482, 493, 589, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 649, 818, 827
HpyF3I CTNAG 3 cut(s) 485, 726, 838
HpySE526I ACGT 2 cut(s) 87, 436
Hsp92II CATG 4 cut(s) 331, 589, 684, 865
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 208, 707, 751
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 3 cut(s) 48, 385, 505
LweI GCATC 1 cut(s) 630
MaeI CTAG 1 cut(s) 528
MaeII ACGT 2 cut(s) 87, 436
MaeIII GTNAC 3 cut(s) 49, 59, 458
MalI GATC 3 cut(s) 210, 709, 753
MboI GATC 3 cut(s) 208, 707, 751
MboII GAAGA 4 cut(s) 104, 137, 238, 436
MflI RGATCY 2 cut(s) 707, 751
MhlI GDGCHC 3 cut(s) 18, 99, 569
MluCI AATT 6 cut(s) 22, 27, 509, 768, 853, 878
MnlI CCTC 8 cut(s) 38, 153, 189, 214, 229, 351, 536, 847
Mph1103I ATGCAT 1 cut(s) 682
MroNI GCCGGC 1 cut(s) 184
MseI TTAA 2 cut(s) 407, 761
MspI CCGG 2 cut(s) 185, 335
MspR9I CCNGG 1 cut(s) 749
Mva1269I GAATGC 2 cut(s) 318, 495
MvaI CCWGG 1 cut(s) 749
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 4 cut(s) 200, 649, 818, 827
NaeI GCCGGC 1 cut(s) 186
NcoI CCATGG 1 cut(s) 327
NdeII GATC 3 cut(s) 208, 707, 751
NgoMIV GCCGGC 1 cut(s) 184
NlaIII CATG 4 cut(s) 331, 589, 684, 865
NlaIV GGNNCC 5 cut(s) 202, 333, 339, 753, 820
NmuCI GTSAC 1 cut(s) 49
NruI TCGCGA 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 2 cut(s) 589, 684
NspV TTCGAA 1 cut(s) 123
PaeI GCATGC 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 2 cut(s) 318, 495
PdiI GCCGGC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 8, 797
PfoI TCCNGGA 1 cut(s) 747
PkrI GCNGC 5 cut(s) 38, 190, 193, 400, 495
Psp1406I AACGTT 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 747
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 747
PspN4I GGNNCC 5 cut(s) 202, 333, 339, 753, 820
PspPI GGNCC 5 cut(s) 332, 545, 650, 659, 696
PsuI RGATCY 2 cut(s) 707, 751
RruI TCGCGA 1 cut(s) 420
RsaI GTAC 3 cut(s) 133, 282, 604
RsaNI GTAC 3 cut(s) 132, 281, 603
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 407, 761
SatI GCNGC 5 cut(s) 37, 189, 192, 399, 494
Sau3AI GATC 3 cut(s) 208, 707, 751
Sau96I GGNCC 5 cut(s) 332, 545, 650, 659, 696
ScaI AGTACT 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 749
SduI GDGCHC 3 cut(s) 18, 99, 569
SfaNI GCATC 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 123
SphI GCATGC 1 cut(s) 589
Sse9I AATT 6 cut(s) 22, 27, 509, 768, 853, 878
SsiI CCGC 7 cut(s) 118, 135, 182, 189, 192, 389, 469
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 747
StyI CCWWGG 3 cut(s) 327, 522, 662
TaaI ACNGT 3 cut(s) 200, 466, 868
TaiI ACGT 2 cut(s) 90, 439
TaqI TCGA 2 cut(s) 123, 249
TasI AATT 6 cut(s) 22, 27, 509, 768, 853, 878
TatI WGTACW 2 cut(s) 280, 602
TauI GCSGC 2 cut(s) 191, 194
TfiI GAWTC 2 cut(s) 8, 797
Tru1I TTAA 2 cut(s) 407, 761
Tru9I TTAA 2 cut(s) 407, 761
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 3 cut(s) 36, 398, 493
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 318, 374, 543
TspGWI ACGGA 1 cut(s) 446
XapI RAATTY 1 cut(s) 22
XceI RCATGY 2 cut(s) 589, 684
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 1 cut(s) 528
ZrmI AGTACT 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.