Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Reverse (-)

61462565 .. 61467445

Gene Structure 4881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATTAAATTCACAGCCTTTTGTTTGATAATGCATGGGTTTTCTGGTTTGGATTATGCCTATTTTAAGAGAGGGCTTGAAGCTTTGGGTTCTATACAACAGGTACAAGCAGTGCTATTGCTGTTGGGAGGACGTGATGCACCAACTGGCGTTCCTAGGGTTGAAATGTCTTACGATCAGAATACAAGGGGTGTGGGTGACACCCCAAAGCGTTCGAATCTTTCCCGAAGAATAGCTTCCCTTGTTAGATTTCGTGAGAAACGGAAGGAGAGGTGTTTTGACAAGAAAATTAGGTACACTGTGCGTAAAGAGGTTGCACAGAGAATGCACCGTAAGAATGGACAGTTCGCATCATTAAAAGAAAATTCTAGCGGTTCTGGTTGGGACTCGGCACAAAGTTCCCTTCAAGATGGCACTCCTCGACCTGAAACTGTCTTACGAAGATGTCAACACTGTGGAGTTAGTGAAAATAATACTCCTGCTATGCGCCGAGGGCCTGCTGGTCCAAGAACTTTATGTAATGCTTGTGGACTTATGTGGGCGAATAAGGGAACATTGAGAGATCTCAGCAAGGGAGGAAGGAACCTTTCCATGGACCACATTGAACCTGGAACACCACTTGAAATCAAGCCTTCAATAGTTGAATGTGAATTCTCTGGCAACCAGGATGGGCATGGAGCTCGTGAAGATCCTTCTAAATCAGTCATTGAAGGTTCCAATGATGCTTCTGTCAACCTGGATGTGGAAGTATGTTTACCTTTATGTTTACAATGGTGTTATCTTTGCCTATGCCTTTTGGTATATTGTTTTTACTACTGCTTGTCATGTAATTTAAGAAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

281

Amino Acids

31.36

Weight (kDa)

9.0

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	77 - 118	5.2e-14	CCT motif
Jas_motif	PF09425	77 - 99	5.2e-07	Jas motif
GATA	PF00320	149 - 185	1.7e-12	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	1 cut(s)	683
AcsI	RAATTY	3 cut(s)	8, 364, 650
AfaI	GTAC	2 cut(s)	105, 296
AfiI	CCNNNNNNNGG	2 cut(s)	592, 742
AgsI	TTSAA	8 cut(s)	80, 164, 407, 605, 623, 636, 644, 710
AjiI	CACGTC	1 cut(s)	134
AjnI	CCWGG	3 cut(s)	607, 663, 735
AluBI	AGCT	3 cut(s)	83, 236, 680
AluI	AGCT	3 cut(s)	83, 236, 680
Alw21I	GWGCWC	1 cut(s)	682
AlwI	GGATC	1 cut(s)	683
AoxI	GGCC	1 cut(s)	494
ApoI	RAATTY	3 cut(s)	8, 364, 650
Asp700I	GAANNNNTTC	1 cut(s)	235
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	3 cut(s)	494, 503, 595
AsuHPI	GGTGA	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	503, 595
AvrII	CCTAGG	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	682
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BauI	CACGAG	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	682
BccI	CCATC	2 cut(s)	404, 662
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	3 cut(s)	609, 665, 737
BfaI	CTAG	2 cut(s)	156, 369
BglII	AGATCT	1 cut(s)	562
BlnI	CCTAGG	1 cut(s)	155
Bme1390I	CCNGG	3 cut(s)	609, 665, 737
Bme18I	GGWCC	2 cut(s)	503, 595
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	3 cut(s)	494, 503, 595
BmiI	GGNNCC	2 cut(s)	584, 715
BmrFI	CCNGG	3 cut(s)	609, 665, 737
BmsI	GCATC	3 cut(s)	127, 359, 712
Bpu14I	TTCGAA	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	155, 490, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 742
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	3 cut(s)	609, 665, 737
BseDI	CCNNGG	3 cut(s)	155, 490, 591
BseGI	GGATG	2 cut(s)	673, 745
BseLI	CCNNNNNNNGG	2 cut(s)	592, 742
BseMII	CTCAG	1 cut(s)	580
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	682
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	592, 742
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	496
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	175, 562, 688
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	579
BspLI	GGNNCC	2 cut(s)	584, 715
BspPI	GGATC	1 cut(s)	683
BspT104I	TTCGAA	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	155, 490, 591
BssMI	GATC	3 cut(s)	175, 562, 688
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	2 cut(s)	155, 591
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	3 cut(s)	609, 665, 737
Bst4CI	ACNGT	6 cut(s)	301, 332, 345, 433, 455, 842
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	1 cut(s)	566
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	673, 745
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	3 cut(s)	178, 565, 691
BstMBI	GATC	3 cut(s)	175, 562, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	3 cut(s)	609, 665, 737
BstSCI	CCNGG	3 cut(s)	607, 663, 735
BstX2I	RGATCY	2 cut(s)	562, 688
BstYI	RGATCY	2 cut(s)	562, 688
BsuRI	GGCC	1 cut(s)	496
BtgI	CCRYGG	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	673, 745
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	117, 297, 451
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	3 cut(s)	494, 503, 595
Csp6I	GTAC	2 cut(s)	104, 295
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	4 cut(s)	35, 592, 674, 825
CviJI	RGCY	7 cut(s)	17, 76, 83, 236, 496, 631, 680
CviKI_1	RGCY	7 cut(s)	17, 76, 83, 236, 496, 631, 680
CviQI	GTAC	2 cut(s)	104, 295
DdeI	CTNAG	1 cut(s)	566
DpnI	GATC	3 cut(s)	177, 564, 690
DpnII	GATC	3 cut(s)	175, 562, 688
Ecl136II	GAGCTC	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	155, 591
Eco24I	GRGCYC	1 cut(s)	682
Eco47I	GGWCC	2 cut(s)	503, 595
Eco53kI	GAGCTC	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	3 cut(s)	607, 663, 735
EcoT14I	CCWWGG	2 cut(s)	155, 591
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	682
ErhI	CCWWGG	2 cut(s)	155, 591
FaeI	CATG	4 cut(s)	38, 595, 677, 828
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	4 cut(s)	34, 591, 673, 824
FokI	GGATG	2 cut(s)	680, 752
FriOI	GRGCYC	1 cut(s)	682
FspBI	CTAG	2 cut(s)	156, 369
GlaI	GCGC	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	496
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	4 cut(s)	38, 595, 677, 828
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	2 cut(s)	449, 733
HindII	GTYRAC	2 cut(s)	449, 733
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	2 cut(s)	217, 386
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	6 cut(s)	297, 449, 530, 733, 755, 767
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	4 cut(s)	225, 254, 407, 683
Hpy8I	GTNNAC	6 cut(s)	297, 449, 530, 733, 755, 767
HpyAV	CCTTC	6 cut(s)	259, 413, 573, 642, 702, 704
HpyCH4III	ACNGT	6 cut(s)	301, 332, 345, 433, 455, 842
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	34, 140, 317, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	1 cut(s)	566
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	4 cut(s)	38, 595, 677, 828
HspAI	GCGC	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	175, 562, 688
LmnI	GCTCC	1 cut(s)	677
LweI	GCATC	3 cut(s)	127, 359, 712
MaeI	CTAG	2 cut(s)	156, 369
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	3 cut(s)	177, 564, 690
MboI	GATC	3 cut(s)	175, 562, 688
MboII	GAAGA	3 cut(s)	240, 453, 698
MflI	RGATCY	2 cut(s)	562, 688
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	5 cut(s)	8, 288, 364, 650, 829
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	65, 122, 264, 304, 429, 485, 569
Mph1103I	ATGCAT	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	4 cut(s)	6, 66, 356, 833
MspR9I	CCNGG	3 cut(s)	609, 665, 737
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	3 cut(s)	609, 665, 737
MwoI	GCNNNNNNNGC	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	3 cut(s)	175, 562, 688
NlaIII	CATG	4 cut(s)	38, 595, 677, 828
NlaIV	GGNNCC	2 cut(s)	584, 715
NmeAIII	GCCGAG	2 cut(s)	368, 515
NmuCI	GTSAC	1 cut(s)	197
NsiI	ATGCAT	1 cut(s)	36
NspV	TTCGAA	1 cut(s)	215
PctI	GAATGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	682
Psp6I	CCWGG	3 cut(s)	607, 663, 735
PspGI	CCWGG	3 cut(s)	607, 663, 735
PspN4I	GGNNCC	2 cut(s)	584, 715
PspPI	GGNCC	3 cut(s)	494, 503, 595
PsuI	RGATCY	2 cut(s)	562, 688
RsaI	GTAC	2 cut(s)	105, 296
RsaNI	GTAC	2 cut(s)	104, 295
SacI	GAGCTC	1 cut(s)	682
SaqAI	TTAA	4 cut(s)	6, 66, 356, 833
Sau3AI	GATC	3 cut(s)	175, 562, 688
Sau96I	GGNCC	3 cut(s)	494, 503, 595
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	609, 665, 737
SduI	GDGCHC	1 cut(s)	682
SfaNI	GCATC	3 cut(s)	127, 359, 712
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	2 cut(s)	503, 595
Sse9I	AATT	5 cut(s)	8, 288, 364, 650, 829
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	156, 369
SstI	GAGCTC	1 cut(s)	682
StyD4I	CCNGG	3 cut(s)	607, 663, 735
StyI	CCWWGG	2 cut(s)	155, 591
TaaI	ACNGT	6 cut(s)	301, 332, 345, 433, 455, 842
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	215, 421
TasI	AATT	5 cut(s)	8, 288, 364, 650, 829
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	4 cut(s)	6, 66, 356, 833
Tru9I	TTAA	4 cut(s)	6, 66, 356, 833
TscAI	CASTG	3 cut(s)	117, 304, 458
TseFI	GTSAC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	3 cut(s)	117, 304, 458
VpaK11BI	GGWCC	2 cut(s)	503, 595
XapI	RAATTY	3 cut(s)	8, 364, 650
XcmI	CCANNNNNNNNNTGG	2 cut(s)	605, 671
XmaJI	CCTAGG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	2 cut(s)	156, 369
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.