Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Forward (+)

42450479 .. 42459674

Gene Structure 9196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCATCGGAAGAATGGACAGTTTGCATCTTTGAAGGATCCTTCCAAATTGGTTGCGGGGAATTGTGATTCAAGTGATAGCACTTCTTGTCCAGAATCTGTCTTACGCAGATGTCAGCACTGTGGGATTAGTGAAAAGTCTACCCCAGCAATGCGTCGGGGACCGAATGGCCCAAGATCTCTCTGTAATGCTTGTGGTCTTAGGTGGGCAAATAAGGGAACATTGAGAGATCTTACAAAATCAGGGAGGGATGTTTCTTTCGACCAAAATGAGCTGGAAAGCCCAGAGGAGAATAAGCCTATTGCATTGGATGCTGAAGTCCCTCTTCTGACACTGGGCGACCAGGACATGCTTGAAACCGCTGAAGCTGCTACTAATCACGTATCCATCCAAATGGAGAATTCATCAGTCAACCTTGATGAGCAGGAGAATCTGGAAGAATTAGCCAATGCTTCAGGGACAGAATTTGAGATTCCTGCAAACTTCGAAGAGCAGGTGGTTGATTTTTATGATTGCAACTTGGAGACTCACTGGGGAGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

181

Amino Acids

19.86

Weight (kDa)

4.56

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	38 - 74	6.5e-13	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	2 cut(s)	56, 360
AclWI	GGATC	2 cut(s)	32, 45
AcsI	RAATTY	2 cut(s)	400, 464
AcuI	CTGAAG	3 cut(s)	336, 384, 438
AgsI	TTSAA	3 cut(s)	34, 72, 356
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	2 cut(s)	274, 368
AluI	AGCT	2 cut(s)	274, 368
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	2 cut(s)	32, 45
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	400, 464
AspS9I	GGNCC	2 cut(s)	161, 170
AsuII	TTCGAA	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	394
BglII	AGATCT	2 cut(s)	176, 229
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	161, 170
BmiI	GGNNCC	2 cut(s)	39, 162
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	2 cut(s)	344, 541
BmsI	GCATC	3 cut(s)	13, 35, 301
BmuI	ACTGGG	2 cut(s)	344, 541
Bpu14I	TTCGAA	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	339, 536
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	344
BseGI	GGATG	3 cut(s)	256, 316, 387
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	339, 536
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	355
BseYI	CCCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	171
BslFI	GGGAC	3 cut(s)	174, 305, 472
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	3 cut(s)	174, 305, 472
BsnI	GGCC	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	37, 176, 229
BspACI	CCGC	2 cut(s)	56, 360
BspANI	GGCC	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	39, 162
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	32, 45
BspQI	GCTCTTC	1 cut(s)	483
BspT104I	TTCGAA	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	339, 536
BssMI	GATC	3 cut(s)	37, 176, 229
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	21, 122
Bst6I	CTCTTC	2 cut(s)	330, 483
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	382
BstBI	TTCGAA	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	200
BstF5I	GGATG	3 cut(s)	256, 316, 387
BstKTI	GATC	3 cut(s)	40, 179, 232
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	3 cut(s)	37, 176, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 368
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	3 cut(s)	37, 176, 229
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	3 cut(s)	37, 176, 229
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	256, 316, 387
BtsIMutI	CAGTG	3 cut(s)	118, 332, 529
BveI	ACCTGC	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	161, 170
CseI	GACGC	1 cut(s)	143
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	6 cut(s)	171, 274, 282, 298, 368, 446
CviKI_1	RGCY	6 cut(s)	171, 274, 282, 298, 368, 446
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	3 cut(s)	39, 178, 231
DpnII	GATC	3 cut(s)	37, 176, 229
Eam1104I	CTCTTC	2 cut(s)	330, 483
EarI	CTCTTC	2 cut(s)	330, 483
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	3 cut(s)	336, 384, 438
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	352
FaiI	YATR	2 cut(s)	350, 510
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	3 cut(s)	174, 305, 472
FatI	CATG	1 cut(s)	348
FauI	CCCGC	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	3 cut(s)	263, 323, 374
Fsp4HI	GCNGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	369
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	171
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	5 cut(s)	68, 95, 430, 472, 526
Hpy166II	GTNNAC	2 cut(s)	141, 412
Hpy188I	TCNGA	2 cut(s)	9, 330
Hpy188III	TCNNGA	2 cut(s)	92, 434
Hpy8I	GTNNAC	2 cut(s)	141, 412
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	28, 51
HpyCH4III	ACNGT	2 cut(s)	21, 122
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	5 cut(s)	4, 26, 305, 479, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 368
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	37, 176, 229
LguI	GCTCTTC	1 cut(s)	483
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	3 cut(s)	13, 35, 301
MaeII	ACGT	1 cut(s)	381
MalI	GATC	3 cut(s)	39, 178, 231
MboI	GATC	3 cut(s)	37, 176, 229
MboII	GAAGA	4 cut(s)	22, 317, 449, 500
MflI	RGATCY	3 cut(s)	37, 176, 229
MluCI	AATT	5 cut(s)	47, 61, 400, 440, 464
MlyI	GAGTC	1 cut(s)	520
MnlI	CCTC	4 cut(s)	240, 280, 333, 530
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	311, 368
NdeII	GATC	3 cut(s)	37, 176, 229
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	2 cut(s)	39, 162
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	486
PaqCI	CACCTGC	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	483
PfeI	GAWTC	4 cut(s)	68, 95, 430, 472
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Ppu21I	YACGTR	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	39, 162
PspPI	GGNCC	2 cut(s)	161, 170
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	37, 176, 229
RseI	CAYNNNNRTG	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	483
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	37, 176, 229
Sau96I	GGNCC	2 cut(s)	161, 170
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	6 cut(s)	206, 276, 370, 384, 417, 498
SfaNI	GCATC	3 cut(s)	13, 35, 301
SfuI	TTCGAA	1 cut(s)	486
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	5 cut(s)	47, 61, 400, 440, 464
SsiI	CCGC	2 cut(s)	56, 360
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	21, 122
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	261, 486
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	5 cut(s)	47, 61, 400, 440, 464
TfiI	GAWTC	4 cut(s)	68, 95, 430, 472
TscAI	CASTG	3 cut(s)	125, 339, 536
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	3 cut(s)	125, 339, 536
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	400, 464
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	140
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.