Prupe.1G534400_v2.0.a1

GATA transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
43682540 .. 43688265
5726 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G534400.1

Sequence Viewer

Length: 1065 bp
ATGGCGGCCGTGAATCCGCAGCCACTGCAAGCGCGACCATTCGAGGAGCACGGGAGAGGTCCGATACCGATCGAAGACGATGAGGCTGAGTACGAAGATGGTGGTGATGATGGTATGGAGGACATGGAGGAGGTTCATGTGAATTCGGTCAGCGTTGCGGAGCGTGGTGGAGTAGGAGGAGGAGGAGGAGGAGGTGTGGTTATGGCGTCCAGGACTAGTGAGCTCACTCTGTCTTTTGAAGGCGAGGTCTATGTCTTCCCTGCTGTTACACCTGAGAAGGTGCAAGCAGTACTATTGCTATTGGGAGGACGTGATGTACCAACTGGTGTGCCTACAGTTGAAGTGTCTTACGATCAGAATACACGGGGTGTGGCTGACACCCCAAAACGTTCAAATCTTTCACGAAGAATAGCTTCACTGGTTCGGTTTCGTGAAAAACGGAAGGAGAGATGCTTTGACAAGAAAATTAGGTACACAGTCCGTAAAGAGGTTGCACAGAGGATGCTTCGTAAAAATGGACAGTTTGCATCATTAAAACAAAATTCAGGTGATTCTGGTTGGGATTCGGCACAAAGTGGCCTTCAAGATGGCACTTCTCGACCAGAAACTGTCTTACGGCGATGTCAACATTGTGGAGTTAGTGAAAATAATACTCCTGCAATGCGCCGTGGACCTGCTGGCCCAAGAACCTTATGTAATGCATGTGGTCTTATGTGGGCGAATAAGGGAACACTGAGAGATCTCAGCAAGGGAGGAAGGAACCTTACCATGGACCATATAGAACCTGGAACACCAATCGAAGTGAAGCCTTTACTTGTTGAAGGAGAATTTTCTGGAAACCAGGATGAGCATGGAACACTTGAAGGTTCTTCTAAAACAGTTATTGAAAGATCCAATGATGCTTCTGTCAACCTGGATGAACAAGATTTGCATGAAACCGCTGAAGATCTTACAAACAGTTTGCCGATGGGGATTGTTTCCTCAGCCAATGATGAGCAGGAACCTCTGGTTGAGCTCACTAATCCTTCGGATACAGATTTAGAAATCCCTACTAATTTTGATTAG

Protein Analysis

355

Amino Acids

38.46

Weight (kDa)

4.84

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 682
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 5, 17, 158, 939
AclI AACGTT 1 cut(s) 388
AclWI GGATC 1 cut(s) 885
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 142, 541, 827
AcuI CTGAAG 1 cut(s) 963
AcyI GRCGYC 1 cut(s) 206
AdeI CACNNNGTG 2 cut(s) 368, 575
AfaI GTAC 4 cut(s) 92, 291, 318, 473
AfiI CCNNNNNNNGG 2 cut(s) 487, 769
AgsI TTSAA 7 cut(s) 239, 341, 393, 584, 821, 863, 887
AhlI ACTAGT 1 cut(s) 215
AjiI CACGTC 1 cut(s) 311
AjnI CCWGG 4 cut(s) 209, 784, 840, 912
AluBI AGCT 3 cut(s) 223, 413, 1015
AluI AGCT 3 cut(s) 223, 413, 1015
Alw21I GWGCWC 3 cut(s) 51, 225, 1017
AlwI GGATC 1 cut(s) 885
AlwNI CAGNNNCTG 2 cut(s) 25, 608
AoxI GGCC 3 cut(s) 6, 577, 679
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 3 cut(s) 142, 541, 827
Asp700I GAANNNNTTC 1 cut(s) 412
AspLEI GCGC 2 cut(s) 34, 666
AspS9I GGNCC 4 cut(s) 59, 671, 680, 772
AsuHPI GGTGA 2 cut(s) 116, 560
AvaII GGWCC 3 cut(s) 59, 671, 772
BanII GRGCYC 2 cut(s) 225, 1017
BarI GAAGNNNNNNTAC 2 cut(s) 748, 780
BbsI GAAGAC 2 cut(s) 81, 247
Bbv12I GWGCWC 3 cut(s) 51, 225, 1017
BbvCI CCTCAGC 1 cut(s) 982
BbvI GCAGC 1 cut(s) 31
BccI CCATC 4 cut(s) 92, 104, 581, 961
BceAI ACGGC 2 cut(s) 632, 651
BciT130I CCWGG 4 cut(s) 211, 786, 842, 914
BciVI GTATCC 1 cut(s) 1024
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 682
BfuI GTATCC 1 cut(s) 1024
BglII AGATCT 2 cut(s) 739, 946
BisI GCNGC 2 cut(s) 6, 20
BlsI GCNGC 2 cut(s) 7, 21
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 4 cut(s) 211, 786, 842, 914
Bme18I GGWCC 3 cut(s) 59, 671, 772
BmgBI CACGTC 1 cut(s) 311
BmgT120I GGNCC 4 cut(s) 59, 671, 680, 772
BmiI GGNNCC 2 cut(s) 761, 1002
BmrFI CCNGG 4 cut(s) 211, 786, 842, 914
BmsI GCATC 4 cut(s) 440, 492, 536, 889
BpiI GAAGAC 2 cut(s) 81, 247
Bpu10I CCTNAGC 1 cut(s) 982
BsaBI GATNNNNATC 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 667, 768
BsaXI ACNNNNNCTCC 4 cut(s) 180, 183, 210, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 769
Bse1I ACTGG 2 cut(s) 328, 423
Bse3DI GCAATG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 68
BseBI CCWGG 4 cut(s) 211, 786, 842, 914
BseDI CCNNGG 2 cut(s) 667, 768
BseGI GGATG 3 cut(s) 507, 850, 922
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 2 cut(s) 487, 769
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 5 cut(s) 78, 264, 725, 757, 996
BseNI ACTGG 2 cut(s) 328, 423
BseRI GAGGAG 7 cut(s) 59, 143, 192, 195, 198, 201, 204
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 2 cut(s) 9, 72
BshFI GGCC 3 cut(s) 8, 579, 681
BsiEI CGRYCG 2 cut(s) 9, 72
BsiHKAI GWGCWC 3 cut(s) 51, 225, 1017
BslI CCNNNNNNNGG 2 cut(s) 487, 769
BsnI GGCC 3 cut(s) 8, 579, 681
Bsp1286I GDGCHC 3 cut(s) 51, 225, 1017
Bsp143I GATC 5 cut(s) 69, 352, 739, 890, 946
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 4 cut(s) 5, 17, 158, 939
BspANI GGCC 3 cut(s) 8, 579, 681
BspCNI CTCAG 5 cut(s) 79, 265, 726, 756, 995
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 761, 1002
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 1 cut(s) 885
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 2 cut(s) 328, 423
BssECI CCNNGG 2 cut(s) 667, 768
BssMI GATC 5 cut(s) 69, 352, 739, 890, 946
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 768
Bst2UI CCWGG 4 cut(s) 211, 786, 842, 914
Bst4CI ACNGT 6 cut(s) 337, 478, 522, 610, 880, 959
BstACI GRCGYC 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 30, 285, 679
BstDEI CTNAG 5 cut(s) 87, 273, 734, 743, 982
BstDSI CCRYGG 2 cut(s) 667, 768
BstF5I GGATG 3 cut(s) 507, 850, 922
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 34, 666
BstKTI GATC 5 cut(s) 72, 355, 742, 893, 949
BstMBI GATC 5 cut(s) 69, 352, 739, 890, 946
BstMCI CGRYCG 2 cut(s) 9, 72
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 4 cut(s) 211, 786, 842, 914
BstNSI RCATGY 1 cut(s) 705
BstSCI CCNGG 4 cut(s) 209, 784, 840, 912
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 2 cut(s) 81, 247
BstX2I RGATCY 3 cut(s) 739, 890, 946
BstYI RGATCY 3 cut(s) 739, 890, 946
BstZI CGGCCG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 3 cut(s) 8, 579, 681
BtgI CCRYGG 2 cut(s) 667, 768
BtgZI GCGATG 1 cut(s) 634
BtrI CACGTC 1 cut(s) 311
BtsCI GGATG 3 cut(s) 507, 850, 922
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 3 cut(s) 23, 416, 731
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 3 cut(s) 30, 285, 679
CaiI CAGNNNCTG 2 cut(s) 25, 608
CfoI GCGC 2 cut(s) 34, 666
Cfr13I GGNCC 4 cut(s) 59, 671, 680, 772
CseI GACGC 1 cut(s) 195
Csp6I GTAC 4 cut(s) 91, 290, 317, 472
CviAII CATG 6 cut(s) 124, 137, 702, 769, 851, 932
CviQI GTAC 4 cut(s) 91, 290, 317, 472
DdeI CTNAG 5 cut(s) 87, 273, 734, 743, 982
DpnI GATC 5 cut(s) 71, 354, 741, 892, 948
DpnII GATC 5 cut(s) 69, 352, 739, 890, 946
DraIII CACNNNGTG 2 cut(s) 368, 575
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Ecl136II GAGCTC 2 cut(s) 223, 1015
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 768
Eco24I GRGCYC 2 cut(s) 225, 1017
Eco47I GGWCC 3 cut(s) 59, 671, 772
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 2 cut(s) 223, 1015
Eco57I CTGAAG 1 cut(s) 963
EcoICRI GAGCTC 2 cut(s) 223, 1015
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 4 cut(s) 209, 784, 840, 912
EcoT14I CCWWGG 1 cut(s) 768
EcoT22I ATGCAT 1 cut(s) 703
EcoT38I GRGCYC 2 cut(s) 225, 1017
ErhI CCWWGG 1 cut(s) 768
FaeI CATG 6 cut(s) 127, 140, 705, 772, 854, 935
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FatI CATG 6 cut(s) 123, 136, 701, 768, 850, 931
Fnu4HI GCNGC 2 cut(s) 6, 20
FokI GGATG 3 cut(s) 514, 857, 929
FriOI GRGCYC 2 cut(s) 225, 1017
Fsp4HI GCNGC 2 cut(s) 6, 20
FspBI CTAG 1 cut(s) 216
GlaI GCGC 2 cut(s) 33, 665
GluI GCNGC 2 cut(s) 6, 20
HaeIII GGCC 3 cut(s) 8, 579, 681
HgaI GACGC 1 cut(s) 195
HhaI GCGC 2 cut(s) 34, 666
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 6 cut(s) 127, 140, 705, 772, 854, 935
Hin6I GCGC 2 cut(s) 32, 664
HinP1I GCGC 2 cut(s) 32, 664
HincII GTYRAC 2 cut(s) 626, 910
HindII GTYRAC 2 cut(s) 626, 910
HinfI GANTC 3 cut(s) 13, 551, 563
HphI GGTGA 2 cut(s) 116, 560
Hpy166II GTNNAC 4 cut(s) 474, 626, 671, 910
Hpy188I TCNGA 3 cut(s) 63, 357, 1030
Hpy188III TCNNGA 5 cut(s) 402, 431, 584, 597, 834
Hpy8I GTNNAC 4 cut(s) 474, 626, 671, 910
HpyAV CCTTC 8 cut(s) 233, 271, 436, 590, 750, 815, 857, 1035
HpyCH4III ACNGT 6 cut(s) 337, 478, 522, 610, 880, 959
HpyCH4IV ACGT 2 cut(s) 310, 388
HpyCH4V TGCA 7 cut(s) 28, 283, 494, 527, 659, 701, 931
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 5 cut(s) 87, 273, 734, 743, 982
HpySE526I ACGT 2 cut(s) 310, 388
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 6 cut(s) 127, 140, 705, 772, 854, 935
HspAI GCGC 2 cut(s) 32, 664
Kzo9I GATC 5 cut(s) 69, 352, 739, 890, 946
LmnI GCTCC 2 cut(s) 46, 160
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 4 cut(s) 440, 492, 536, 889
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 310, 388
MaeIII GTNAC 1 cut(s) 265
MalI GATC 5 cut(s) 71, 354, 741, 892, 948
MboI GATC 5 cut(s) 69, 352, 739, 890, 946
MboII GAAGA 6 cut(s) 86, 107, 247, 417, 861, 956
MflI RGATCY 3 cut(s) 739, 890, 946
MhlI GDGCHC 3 cut(s) 51, 225, 1017
MluCI AATT 5 cut(s) 142, 465, 541, 827, 1054
Mph1103I ATGCAT 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 941
MspR9I CCNGG 4 cut(s) 211, 786, 842, 914
MvaI CCWGG 4 cut(s) 211, 786, 842, 914
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 25
NcoI CCATGG 1 cut(s) 768
NdeII GATC 5 cut(s) 69, 352, 739, 890, 946
NlaIII CATG 6 cut(s) 127, 140, 705, 772, 854, 935
NlaIV GGNNCC 2 cut(s) 761, 1002
NsiI ATGCAT 1 cut(s) 703
NspI RCATGY 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 3 cut(s) 13, 551, 563
PfoI TCCNGGA 1 cut(s) 209
PkrI GCNGC 2 cut(s) 7, 21
Ple19I CGATCG 1 cut(s) 72
Psp124BI GAGCTC 2 cut(s) 225, 1017
Psp1406I AACGTT 1 cut(s) 388
Psp6I CCWGG 4 cut(s) 209, 784, 840, 912
PspGI CCWGG 4 cut(s) 209, 784, 840, 912
PspN4I GGNNCC 2 cut(s) 761, 1002
PspPI GGNCC 4 cut(s) 59, 671, 680, 772
PstNI CAGNNNCTG 2 cut(s) 25, 608
PsuI RGATCY 3 cut(s) 739, 890, 946
PvuI CGATCG 1 cut(s) 72
RsaI GTAC 4 cut(s) 92, 291, 318, 473
RsaNI GTAC 4 cut(s) 91, 290, 317, 472
SacI GAGCTC 2 cut(s) 225, 1017
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 2 cut(s) 6, 20
Sau3AI GATC 5 cut(s) 69, 352, 739, 890, 946
Sau96I GGNCC 4 cut(s) 59, 671, 680, 772
ScaI AGTACT 1 cut(s) 291
ScrFI CCNGG 4 cut(s) 211, 786, 842, 914
SduI GDGCHC 3 cut(s) 51, 225, 1017
SfaNI GCATC 4 cut(s) 440, 492, 536, 889
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 3 cut(s) 59, 671, 772
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 5 cut(s) 142, 465, 541, 827, 1054
SsiI CCGC 4 cut(s) 5, 17, 158, 939
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 2 cut(s) 225, 1017
StyD4I CCNGG 4 cut(s) 209, 784, 840, 912
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 6 cut(s) 337, 478, 522, 610, 880, 959
TaiI ACGT 2 cut(s) 313, 391
TaqI TCGA 4 cut(s) 42, 72, 598, 798
TaqII GACCGA 1 cut(s) 136
TasI AATT 5 cut(s) 142, 465, 541, 827, 1054
TatI WGTACW 1 cut(s) 289
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 13, 551, 563
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 3 cut(s) 30, 423, 738
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 125, 933, 948
TspGWI ACGGA 2 cut(s) 454, 470
TspRI CASTG 3 cut(s) 30, 423, 738
VpaK11BI GGWCC 3 cut(s) 59, 671, 772
XapI RAATTY 3 cut(s) 142, 541, 827
XceI RCATGY 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 2 cut(s) 782, 848
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.