Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000791

Physical Location & Seq

Genomic Coordinates Reverse (-)

28013287 .. 28014369

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0288100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTGACTTTTCTTTCAAAGTTTCAGAGAGTTGTAAGCGCCTACTGCACAAGCAGTGTCTATCCAATTAGACAGTATGGATTCAAATGCTCCATGCATTCACTGGTAGAAATCACCTCAAGAAAATCCATCAAACCATCATCTCCAACTCCTCATCAAAATAGATATCTCAAACTCTCTCTTTTGGACCAACTTCTTCCTCCTACCGTATATGGAACCATCCTGTATTTCTACACCCCTACCACCAACCACTGTGATCATGATGTTGCACTTTCGAAAGTTTCTGAGACTACTTCTAAGCGCTTACAAGCTTCTCTATCCGAAACCTTGGTTCACTACTATCCACTCGCTGGCCGTCTCAAAGGCACTGCGTCCATTGAGTGCAACGATGAAGGCGCACATTTTGTTGAAGCCCGAGTTAGGTGTCAGCTTTCAGATTTTCTTAAACAACCTGATCCTGAGTTACTTAAAAAATTCATGGCAGAACATGATTCTAAAACTGCTCAGATAGCCTTGGGTACTTGTGTCTTACTTGTTCAAATCAGTGTTTTCAACTGCGGAGGAATAGTTATTGCTGTATCCCCTTCACACAAGATTGCAGATGGAATATCCCTCCACACATTTGTACGATTATGGGCTGCTATAAATCGCGGGGAGTACCATCAACTAGTTCTACCGAAGTTTAATGGAGCGACTTTGTTGCCGACTAAAGACTTGTCCACCATGCACAACTTCTTAGGACCAATCCCAACTCAAACTTTAACCACAAGAAGGTTCGTGTTTGATGTGTCAAAGATGGCAAGTCTCAAGGCTGAAATTGGGAGTAGAATCCAAAAGTTCACCCCGACGAACGGACAACTCGTTCTGGCAATCATCTTAAAATGTGCTCTTGCTGCTTCTCATCAATCCAAGCCTGATGGAGATACTACTTCAAGGCTAACAGTATTGTCCCAAATGGTAAACTTGCGCAGAAGAATTGTACCAGAAGTACCCGAAAACGAAATGGGGAACTGGTTTTGGGCGCTTTCCCTGTTATTCAAAGAAAATGAGACAGAAATACACGAGTTGGTGATCAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

360

Amino Acids

40.28

Weight (kDa)

9.11

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	36 - 357	5.7e-62	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51600 AT1G51600 AT3G21175 AT3G21175 AT3G21175
fragaria_vesca	FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_2g11520 FvH4_5g34490
malus_domestica	MD05G1048600.v1.1 MD08G1200900.v1.1 MD09G1160800.v1.1 MD10G1055000.v1.1 MD15G1387800.v1.1
prunus_persica	Prupe.1G534400_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.3G019800_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071200_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1 Prupe.8G071300_v2.0.a1
pyrus_communis	pycom05g04020 pycom08g17450 pycom09g07940 pycom10g04200 pycom15g34810
rosa_chinensis	RchiOBHm_Chr6g0270541 RchiOBHm_Chr7g0235131
rosa_laevigata	RLG00000001180 RLG00000013779
rosa_multiflora	Rmu_co8229271.1_g000001 Rmu_sc0002239.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226260 Rroxscaffold_7G00197750 Rroxscaffold_7G00197830
rosa_rugosa	Rorug06G0055500 Rorug06G0055500 Rorug07G0287900 Rorug07G0288000 Rorug07G0288100
rosa_samantha	Rh6AG174600 Rh6BG177800 Rh6CG173800 Rh6DG166200 Rh7AG442800 Rh7BG415400 Rh7CG463600 Rh7DG432500
rosa_wichuraiana	Rw6G014850 Rw6G014880 Rw7G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	968
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccII	CGCG	1 cut(s)	651
AciI	CCGC	2 cut(s)	558, 651
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	473
AfaI	GTAC	5 cut(s)	520, 627, 659, 981, 990
AfeI	AGCGCT	1 cut(s)	302
AfiI	CCNNNNNNNGG	4 cut(s)	350, 420, 771, 851
AgsI	TTSAA	7 cut(s)	18, 85, 410, 539, 553, 933, 1039
AhlI	ACTAGT	1 cut(s)	667
AloI	GAACNNNNNNTCC	2 cut(s)	846, 878
AluBI	AGCT	2 cut(s)	311, 430
AluI	AGCT	2 cut(s)	311, 430
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	4 cut(s)	281, 362, 809, 1043
AlwI	GGATC	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	414
Aor51HI	AGCGCT	1 cut(s)	302
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	638, 893
ApoI	RAATTY	1 cut(s)	473
AspLEI	GCGC	5 cut(s)	41, 303, 398, 969, 1024
AspS9I	GGNCC	2 cut(s)	187, 740
AsuHPI	GGTGA	4 cut(s)	16, 106, 832, 1081
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	2 cut(s)	187, 740
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BauI	CACGAG	1 cut(s)	1061
Bbv12I	GWGCWC	1 cut(s)	889
BbvI	GCAGC	2 cut(s)	625, 880
BccI	CCATC	7 cut(s)	137, 145, 227, 596, 669, 790, 911
BceAI	ACGGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BciVI	GTATCC	1 cut(s)	589
BclI	TGATCA	2 cut(s)	256, 1071
BcoDI	GTCTC	4 cut(s)	281, 362, 809, 1043
BcuI	ACTAGT	1 cut(s)	667
BfaI	CTAG	1 cut(s)	668
BfoI	RGCGCY	3 cut(s)	42, 304, 1025
BfuI	GTATCC	1 cut(s)	589
BisI	GCNGC	2 cut(s)	639, 894
BlsI	GCNGC	2 cut(s)	640, 895
Bme18I	GGWCC	2 cut(s)	187, 740
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	187, 740
BmiI	GGNNCC	1 cut(s)	217
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	103, 791
BsaJI	CCNNGG	2 cut(s)	327, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	4 cut(s)	350, 420, 771, 851
Bse1I	ACTGG	2 cut(s)	108, 1016
BseDI	CCNNGG	2 cut(s)	327, 513
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	4 cut(s)	350, 420, 771, 851
BseMII	CTCAG	3 cut(s)	276, 450, 518
BseNI	ACTGG	2 cut(s)	108, 1016
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	625, 880
BsgI	GTGCAG	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	651
BshFI	GGCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	889
BsiHKCI	CYCGRG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	934
BslI	CCNNNNNNNGG	4 cut(s)	350, 420, 771, 851
BsmAI	GTCTC	4 cut(s)	281, 362, 809, 1043
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	934
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	354
BsoBI	CYCGRG	1 cut(s)	414
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp143I	GATC	3 cut(s)	256, 454, 1071
BspACI	CCGC	2 cut(s)	558, 651
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	3 cut(s)	277, 451, 517
BspFNI	CGCG	1 cut(s)	651
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	108, 1016
BssECI	CCNNGG	2 cut(s)	327, 513
BssMI	GATC	3 cut(s)	256, 454, 1071
BssSI	CACGAG	1 cut(s)	1061
BssT1I	CCWWGG	2 cut(s)	327, 513
Bst2BI	CACGAG	1 cut(s)	1061
Bst4CI	ACNGT	4 cut(s)	75, 208, 254, 943
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	5 cut(s)	285, 297, 459, 504, 736
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	651
BstH2I	RGCGCY	3 cut(s)	42, 304, 1025
BstHHI	GCGC	5 cut(s)	41, 303, 398, 969, 1024
BstKTI	GATC	3 cut(s)	259, 457, 1074
BstMAI	GTCTC	4 cut(s)	281, 362, 809, 1043
BstMBI	GATC	3 cut(s)	256, 454, 1071
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 509, 893
BstUI	CGCG	1 cut(s)	651
BstV1I	GCAGC	2 cut(s)	625, 880
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	2 cut(s)	61, 366
BtsIMutI	CAGTG	5 cut(s)	61, 101, 250, 366, 550
Cac8I	GCNNGC	1 cut(s)	352
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	5 cut(s)	41, 303, 398, 969, 1024
Cfr13I	GGNCC	2 cut(s)	187, 740
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	5 cut(s)	519, 626, 658, 980, 989
CviAII	CATG	5 cut(s)	94, 260, 478, 488, 724
CviJI	RGCY	9 cut(s)	311, 354, 413, 430, 512, 638, 812, 913, 937
CviKI_1	RGCY	9 cut(s)	311, 354, 413, 430, 512, 638, 812, 913, 937
CviQI	GTAC	5 cut(s)	519, 626, 658, 980, 989
DdeI	CTNAG	5 cut(s)	285, 297, 459, 504, 736
DpnI	GATC	3 cut(s)	258, 456, 1073
DpnII	GATC	3 cut(s)	256, 454, 1071
EaeI	YGGCCR	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	327, 513
Eco32I	GATATC	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	187, 740
Eco47III	AGCGCT	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	327, 513
EcoT22I	ATGCAT	1 cut(s)	99
ErhI	CCWWGG	2 cut(s)	327, 513
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	5 cut(s)	97, 263, 481, 491, 727
FaqI	GGGAC	1 cut(s)	934
FatI	CATG	5 cut(s)	93, 259, 477, 487, 723
FauI	CCCGC	1 cut(s)	644
FbaI	TGATCA	2 cut(s)	256, 1071
Fnu4HI	GCNGC	2 cut(s)	639, 894
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	639, 894
FspBI	CTAG	1 cut(s)	668
FspI	TGCGCA	1 cut(s)	968
GlaI	GCGC	5 cut(s)	40, 302, 397, 968, 1023
GluI	GCNGC	2 cut(s)	639, 894
HaeII	RGCGCY	3 cut(s)	42, 304, 1025
HaeIII	GGCC	1 cut(s)	354
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	5 cut(s)	41, 303, 398, 969, 1024
Hin1II	CATG	5 cut(s)	97, 263, 481, 491, 727
Hin6I	GCGC	5 cut(s)	39, 301, 396, 967, 1022
HinP1I	GCGC	5 cut(s)	39, 301, 396, 967, 1022
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	3 cut(s)	81, 491, 828
HphI	GGTGA	4 cut(s)	16, 106, 832, 1081
Hpy166II	GTNNAC	4 cut(s)	334, 720, 840, 961
Hpy188I	TCNGA	5 cut(s)	27, 286, 322, 436, 507
Hpy188III	TCNNGA	3 cut(s)	120, 260, 458
Hpy8I	GTNNAC	4 cut(s)	334, 720, 840, 961
Hpy99I	CGWCG	1 cut(s)	850
HpyAV	CCTTC	3 cut(s)	386, 594, 765
HpyCH4III	ACNGT	4 cut(s)	75, 208, 254, 943
HpyCH4V	TGCA	6 cut(s)	48, 97, 269, 384, 599, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 509, 893
HpyF3I	CTNAG	5 cut(s)	285, 297, 459, 504, 736
Hsp92II	CATG	5 cut(s)	97, 263, 481, 491, 727
HspAI	GCGC	5 cut(s)	39, 301, 396, 967, 1022
Ksp22I	TGATCA	2 cut(s)	256, 1071
Kzo9I	GATC	3 cut(s)	256, 454, 1071
LmnI	GCTCC	2 cut(s)	95, 689
Lsp1109I	GCAGC	2 cut(s)	625, 880
MaeI	CTAG	1 cut(s)	668
MaeIII	GTNAC	2 cut(s)	4, 462
MalI	GATC	3 cut(s)	258, 456, 1073
MboI	GATC	3 cut(s)	256, 454, 1071
MboII	GAAGA	2 cut(s)	188, 984
MhlI	GDGCHC	1 cut(s)	889
MluCI	AATT	4 cut(s)	66, 473, 816, 975
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	5 cut(s)	127, 162, 210, 554, 623
Mph1103I	ATGCAT	1 cut(s)	99
MseI	TTAA	5 cut(s)	444, 468, 684, 761, 878
Mva1269I	GAATGC	1 cut(s)	97
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	3 cut(s)	45, 509, 893
NdeII	GATC	3 cut(s)	256, 454, 1071
NlaIII	CATG	5 cut(s)	97, 263, 481, 491, 727
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	4
NsbI	TGCGCA	1 cut(s)	968
NsiI	ATGCAT	1 cut(s)	99
NspV	TTCGAA	1 cut(s)	275
PagI	TCATGA	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	858
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	81, 491, 828
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	640, 895
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	187, 740
RsaI	GTAC	5 cut(s)	520, 627, 659, 981, 990
RsaNI	GTAC	5 cut(s)	519, 626, 658, 980, 989
SaqAI	TTAA	5 cut(s)	444, 468, 684, 761, 878
SatI	GCNGC	2 cut(s)	639, 894
Sau3AI	GATC	3 cut(s)	256, 454, 1071
Sau96I	GGNCC	2 cut(s)	187, 740
SduI	GDGCHC	1 cut(s)	889
SetI	ASST	7 cut(s)	119, 313, 329, 425, 432, 454, 776
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	2 cut(s)	187, 740
SmlI	CTYRAG	2 cut(s)	118, 806
SmoI	CTYRAG	2 cut(s)	118, 806
SpeI	ACTAGT	1 cut(s)	667
Sse9I	AATT	4 cut(s)	66, 473, 816, 975
SsiI	CCGC	2 cut(s)	558, 651
SspMI	CTAG	1 cut(s)	668
StyI	CCWWGG	2 cut(s)	327, 513
TaaI	ACNGT	4 cut(s)	75, 208, 254, 943
TaqI	TCGA	1 cut(s)	275
TasI	AATT	4 cut(s)	66, 473, 816, 975
TfiI	GAWTC	3 cut(s)	81, 491, 828
Tru1I	TTAA	5 cut(s)	444, 468, 684, 761, 878
Tru9I	TTAA	5 cut(s)	444, 468, 684, 761, 878
TscAI	CASTG	5 cut(s)	61, 108, 257, 373, 550
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	638, 893
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	405, 466
TspGWI	ACGGA	1 cut(s)	867
TspRI	CASTG	5 cut(s)	61, 108, 257, 373, 550
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	2 cut(s)	187, 740
XapI	RAATTY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	668
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.